gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 25 - 202 | 4.8e-28 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 5 |
| AcsI | RAATTY | 1 cut(s) | 79 |
| AcuI | CTGAAG | 1 cut(s) | 215 |
| AfaI | GTAC | 3 cut(s) | 101, 404, 415 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AgsI | TTSAA | 3 cut(s) | 205, 262, 575 |
| AluBI | AGCT | 5 cut(s) | 134, 193, 466, 571, 641 |
| AluI | AGCT | 5 cut(s) | 134, 193, 466, 571, 641 |
| Alw26I | GTCTC | 4 cut(s) | 2, 110, 245, 263 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 634 |
| AoxI | GGCC | 2 cut(s) | 121, 228 |
| ApeKI | GCWGC | 2 cut(s) | 134, 137 |
| ApoI | RAATTY | 1 cut(s) | 79 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuHPI | GGTGA | 2 cut(s) | 337, 481 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BaeGI | GKGCMC | 1 cut(s) | 788 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 290, 322 |
| BbsI | GAAGAC | 1 cut(s) | 721 |
| BbvI | GCAGC | 2 cut(s) | 121, 149 |
| BccI | CCATC | 2 cut(s) | 38, 263 |
| BcoDI | GTCTC | 4 cut(s) | 2, 110, 245, 263 |
| BfaI | CTAG | 2 cut(s) | 764, 789 |
| BfmI | CTRYAG | 2 cut(s) | 129, 135 |
| BglII | AGATCT | 1 cut(s) | 483 |
| BisI | GCNGC | 2 cut(s) | 135, 138 |
| BlpI | GCTNAGC | 1 cut(s) | 189 |
| BlsI | GCNGC | 2 cut(s) | 136, 139 |
| BmcAI | AGTACT | 2 cut(s) | 101, 404 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 1 cut(s) | 721 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 508 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 1 cut(s) | 503 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse1I | ACTGG | 2 cut(s) | 107, 124 |
| Bse3DI | GCAATG | 1 cut(s) | 741 |
| BseDI | CCNNGG | 1 cut(s) | 503 |
| BseGI | GGATG | 1 cut(s) | 381 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseMI | GCAATG | 1 cut(s) | 741 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseNI | ACTGG | 2 cut(s) | 107, 124 |
| BseSI | GKGCMC | 1 cut(s) | 788 |
| BseXI | GCAGC | 2 cut(s) | 121, 149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 92 |
| BshFI | GGCC | 2 cut(s) | 123, 230 |
| BsiEI | CGRYCG | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsmAI | GTCTC | 4 cut(s) | 2, 110, 245, 263 |
| BsmI | GAATGC | 1 cut(s) | 749 |
| BsnI | GGCC | 2 cut(s) | 123, 230 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 2 cut(s) | 337, 788 |
| Bsp143I | GATC | 3 cut(s) | 55, 89, 483 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 189 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspANI | GGCC | 2 cut(s) | 123, 230 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspMAI | CTGCAG | 1 cut(s) | 139 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BsrDI | GCAATG | 1 cut(s) | 741 |
| BsrI | ACTGG | 2 cut(s) | 107, 124 |
| BssECI | CCNNGG | 1 cut(s) | 503 |
| BssMI | GATC | 3 cut(s) | 55, 89, 483 |
| BssT1I | CCWWGG | 1 cut(s) | 503 |
| Bst6I | CTCTTC | 4 cut(s) | 323, 456, 667, 697 |
| BstC8I | GCNNGC | 4 cut(s) | 27, 345, 584, 605 |
| BstDEI | CTNAG | 2 cut(s) | 159, 189 |
| BstF5I | GGATG | 1 cut(s) | 381 |
| BstKTI | GATC | 3 cut(s) | 58, 92, 486 |
| BstMAI | GTCTC | 4 cut(s) | 2, 110, 245, 263 |
| BstMBI | GATC | 3 cut(s) | 55, 89, 483 |
| BstMCI | CGRYCG | 1 cut(s) | 92 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 753 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSFI | CTRYAG | 2 cut(s) | 129, 135 |
| BstSLI | GKGCMC | 1 cut(s) | 788 |
| BstV1I | GCAGC | 2 cut(s) | 121, 149 |
| BstV2I | GAAGAC | 1 cut(s) | 721 |
| BstX2I | RGATCY | 1 cut(s) | 483 |
| BstYI | RGATCY | 1 cut(s) | 483 |
| BsuRI | GGCC | 2 cut(s) | 123, 230 |
| BtsCI | GGATG | 1 cut(s) | 381 |
| Cac8I | GCNNGC | 4 cut(s) | 27, 345, 584, 605 |
| CaiI | CAGNNNCTG | 1 cut(s) | 634 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| Csp6I | GTAC | 3 cut(s) | 100, 403, 414 |
| CviAII | CATG | 4 cut(s) | 73, 446, 593, 604 |
| CviQI | GTAC | 3 cut(s) | 100, 403, 414 |
| DdeI | CTNAG | 2 cut(s) | 159, 189 |
| DpnI | GATC | 3 cut(s) | 57, 91, 485 |
| DpnII | GATC | 3 cut(s) | 55, 89, 483 |
| Eam1104I | CTCTTC | 4 cut(s) | 323, 456, 667, 697 |
| EarI | CTCTTC | 4 cut(s) | 323, 456, 667, 697 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 503 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| Eco57I | CTGAAG | 1 cut(s) | 215 |
| EcoO109I | RGGNCCY | 1 cut(s) | 631 |
| EcoT14I | CCWWGG | 1 cut(s) | 503 |
| EcoT22I | ATGCAT | 1 cut(s) | 605 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 503 |
| FaeI | CATG | 4 cut(s) | 76, 449, 596, 607 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 630, 662 |
| FatI | CATG | 4 cut(s) | 72, 445, 592, 603 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 138 |
| FokI | GGATG | 1 cut(s) | 388 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 138 |
| FspBI | CTAG | 2 cut(s) | 764, 789 |
| GluI | GCNGC | 2 cut(s) | 135, 138 |
| HaeIII | GGCC | 2 cut(s) | 123, 230 |
| Hin1II | CATG | 4 cut(s) | 76, 449, 596, 607 |
| HincII | GTYRAC | 1 cut(s) | 156 |
| HindII | GTYRAC | 1 cut(s) | 156 |
| HinfI | GANTC | 5 cut(s) | 290, 314, 367, 499, 536 |
| HphI | GGTGA | 2 cut(s) | 337, 481 |
| Hpy166II | GTNNAC | 2 cut(s) | 156, 416 |
| Hpy188I | TCNGA | 3 cut(s) | 89, 549, 692 |
| Hpy188III | TCNNGA | 4 cut(s) | 259, 487, 634, 647 |
| Hpy8I | GTNNAC | 2 cut(s) | 156, 416 |
| HpyCH4IV | ACGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 5 cut(s) | 137, 275, 343, 592, 603 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 753 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 189 |
| HpySE526I | ACGT | 1 cut(s) | 169 |
| Hsp92II | CATG | 4 cut(s) | 76, 449, 596, 607 |
| Kzo9I | GATC | 3 cut(s) | 55, 89, 483 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 1 cut(s) | 662 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 149 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 2 cut(s) | 764, 789 |
| MaeII | ACGT | 1 cut(s) | 169 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 3 cut(s) | 57, 91, 485 |
| MboI | GATC | 3 cut(s) | 55, 89, 483 |
| MboII | GAAGA | 7 cut(s) | 340, 473, 545, 635, 684, 714, 726 |
| MfeI | CAATTG | 1 cut(s) | 107 |
| MflI | RGATCY | 1 cut(s) | 483 |
| MhlI | GDGCHC | 2 cut(s) | 337, 788 |
| MluCI | AATT | 2 cut(s) | 79, 107 |
| MlyI | GAGTC | 2 cut(s) | 308, 493 |
| MnlI | CCTC | 9 cut(s) | 95, 154, 324, 483, 662, 668, 677, 686, 698 |
| Mph1103I | ATGCAT | 1 cut(s) | 605 |
| MseI | TTAA | 1 cut(s) | 726 |
| MunI | CAATTG | 1 cut(s) | 107 |
| Mva1269I | GAATGC | 1 cut(s) | 749 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 753 |
| NdeII | GATC | 3 cut(s) | 55, 89, 483 |
| NlaIII | CATG | 4 cut(s) | 76, 449, 596, 607 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NsiI | ATGCAT | 1 cut(s) | 605 |
| NspI | RCATGY | 1 cut(s) | 607 |
| PaeI | GCATGC | 1 cut(s) | 607 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PctI | GAATGC | 1 cut(s) | 749 |
| PfeI | GAWTC | 3 cut(s) | 290, 367, 536 |
| PkrI | GCNGC | 2 cut(s) | 136, 139 |
| Ple19I | CGATCG | 1 cut(s) | 92 |
| PleI | GAGTC | 2 cut(s) | 308, 493 |
| PpsI | GAGTC | 2 cut(s) | 308, 493 |
| PpuMI | RGGWCCY | 1 cut(s) | 631 |
| Psp5II | RGGWCCY | 1 cut(s) | 631 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| PspPPI | RGGWCCY | 1 cut(s) | 631 |
| PstI | CTGCAG | 1 cut(s) | 139 |
| PstNI | CAGNNNCTG | 1 cut(s) | 634 |
| PsuI | RGATCY | 1 cut(s) | 483 |
| PvuI | CGATCG | 1 cut(s) | 92 |
| RsaI | GTAC | 3 cut(s) | 101, 404, 415 |
| RsaNI | GTAC | 3 cut(s) | 100, 403, 414 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 1 cut(s) | 726 |
| SatI | GCNGC | 2 cut(s) | 135, 138 |
| Sau3AI | GATC | 3 cut(s) | 55, 89, 483 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| ScaI | AGTACT | 2 cut(s) | 101, 404 |
| SchI | GAGTC | 2 cut(s) | 308, 493 |
| SduI | GDGCHC | 2 cut(s) | 337, 788 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SfcI | CTRYAG | 2 cut(s) | 129, 135 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SmlI | CTYRAG | 1 cut(s) | 487 |
| SmoI | CTYRAG | 1 cut(s) | 487 |
| SphI | GCATGC | 1 cut(s) | 607 |
| Sse9I | AATT | 2 cut(s) | 79, 107 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspMI | CTAG | 2 cut(s) | 764, 789 |
| StyI | CCWWGG | 1 cut(s) | 503 |
| TaiI | ACGT | 1 cut(s) | 172 |
| TaqI | TCGA | 3 cut(s) | 42, 92, 527 |
| TasI | AATT | 2 cut(s) | 79, 107 |
| TatI | WGTACW | 2 cut(s) | 99, 402 |
| TfiI | GAWTC | 3 cut(s) | 290, 367, 536 |
| Tru1I | TTAA | 1 cut(s) | 726 |
| Tru9I | TTAA | 1 cut(s) | 726 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 2 cut(s) | 134, 137 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 5 cut(s) | 311, 392, 452, 609, 666 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |
| XapI | RAATTY | 1 cut(s) | 79 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XspI | CTAG | 2 cut(s) | 764, 789 |
| ZrmI | AGTACT | 2 cut(s) | 101, 404 |
| Zsp2I | ATGCAT | 1 cut(s) | 605 |