transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 55 | 1.6e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 410 |
| AcsI | RAATTY | 1 cut(s) | 776 |
| AfaI | GTAC | 3 cut(s) | 251, 392, 563 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 772 |
| AgsI | TTSAA | 3 cut(s) | 17, 177, 616 |
| AhlI | ACTAGT | 2 cut(s) | 170, 665 |
| AluBI | AGCT | 4 cut(s) | 243, 311, 572, 772 |
| AluI | AGCT | 4 cut(s) | 243, 311, 572, 772 |
| Alw21I | GWGCWC | 1 cut(s) | 872 |
| Alw26I | GTCTC | 3 cut(s) | 86, 543, 849 |
| Ama87I | CYCGRG | 1 cut(s) | 472 |
| ApeKI | GCWGC | 2 cut(s) | 140, 569 |
| ApoI | RAATTY | 1 cut(s) | 776 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 172, 780 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| AvaI | CYCGRG | 1 cut(s) | 472 |
| AxyI | CCTNAGG | 1 cut(s) | 318 |
| Bbv12I | GWGCWC | 1 cut(s) | 872 |
| BbvI | GCAGC | 2 cut(s) | 127, 581 |
| BccI | CCATC | 1 cut(s) | 71 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BclI | TGATCA | 1 cut(s) | 211 |
| BcoDI | GTCTC | 3 cut(s) | 86, 543, 849 |
| BcuI | ACTAGT | 2 cut(s) | 170, 665 |
| BfaI | CTAG | 4 cut(s) | 171, 261, 300, 666 |
| BfuAI | ACCTGC | 1 cut(s) | 410 |
| BisI | GCNGC | 2 cut(s) | 141, 570 |
| BlsI | GCNGC | 2 cut(s) | 142, 571 |
| BmeT110I | CYCGRG | 1 cut(s) | 472 |
| BmsI | GCATC | 3 cut(s) | 127, 357, 745 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 2 cut(s) | 618, 788 |
| BsaI | GGTCTC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 471 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 64, 94 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 772 |
| Bse1I | ACTGG | 1 cut(s) | 202 |
| Bse21I | CCTNAGG | 1 cut(s) | 318 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| BseDI | CCNNGG | 2 cut(s) | 162, 471 |
| BseGI | GGATG | 4 cut(s) | 142, 460, 485, 606 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 772 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseNI | ACTGG | 1 cut(s) | 202 |
| BseXI | GCAGC | 2 cut(s) | 127, 581 |
| BsiHKAI | GWGCWC | 1 cut(s) | 872 |
| BsiHKCI | CYCGRG | 1 cut(s) | 472 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 772 |
| BsmAI | GTCTC | 3 cut(s) | 86, 543, 849 |
| Bso31I | GGTCTC | 1 cut(s) | 86 |
| BsoBI | CYCGRG | 1 cut(s) | 472 |
| Bsp1286I | GDGCHC | 1 cut(s) | 872 |
| Bsp1407I | TGTACA | 1 cut(s) | 390 |
| Bsp143I | GATC | 3 cut(s) | 211, 457, 745 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspMI | ACCTGC | 1 cut(s) | 410 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspTNI | GGTCTC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrGI | TGTACA | 1 cut(s) | 390 |
| BsrI | ACTGG | 1 cut(s) | 202 |
| BssECI | CCNNGG | 2 cut(s) | 162, 471 |
| BssMI | GATC | 3 cut(s) | 211, 457, 745 |
| BssT1I | CCWWGG | 1 cut(s) | 162 |
| Bst4CI | ACNGT | 2 cut(s) | 533, 877 |
| BstAUI | TGTACA | 1 cut(s) | 390 |
| BstC8I | GCNNGC | 1 cut(s) | 262 |
| BstDEI | CTNAG | 3 cut(s) | 318, 684, 848 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 4 cut(s) | 142, 460, 485, 606 |
| BstKTI | GATC | 3 cut(s) | 214, 460, 748 |
| BstMAI | GTCTC | 3 cut(s) | 86, 543, 849 |
| BstMBI | GATC | 3 cut(s) | 211, 457, 745 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstV1I | GCAGC | 2 cut(s) | 127, 581 |
| Bsu36I | CCTNAGG | 1 cut(s) | 318 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 4 cut(s) | 142, 460, 485, 606 |
| BtsIMutI | CAGTG | 1 cut(s) | 786 |
| BveI | ACCTGC | 1 cut(s) | 410 |
| Cac8I | GCNNGC | 1 cut(s) | 262 |
| Csp6I | GTAC | 3 cut(s) | 250, 391, 562 |
| CviAII | CATG | 3 cut(s) | 163, 232, 510 |
| CviJI | RGCY | 7 cut(s) | 243, 311, 338, 557, 572, 772, 803 |
| CviKI_1 | RGCY | 7 cut(s) | 243, 311, 338, 557, 572, 772, 803 |
| CviQI | GTAC | 3 cut(s) | 250, 391, 562 |
| DdeI | CTNAG | 3 cut(s) | 318, 684, 848 |
| DpnI | GATC | 3 cut(s) | 213, 459, 747 |
| DpnII | GATC | 3 cut(s) | 211, 457, 745 |
| Eco130I | CCWWGG | 1 cut(s) | 162 |
| Eco31I | GGTCTC | 1 cut(s) | 86 |
| Eco32I | GATATC | 2 cut(s) | 305, 731 |
| Eco81I | CCTNAGG | 1 cut(s) | 318 |
| Eco88I | CYCGRG | 1 cut(s) | 472 |
| EcoRV | GATATC | 2 cut(s) | 305, 731 |
| EcoT14I | CCWWGG | 1 cut(s) | 162 |
| ErhI | CCWWGG | 1 cut(s) | 162 |
| FaeI | CATG | 3 cut(s) | 166, 235, 513 |
| FatI | CATG | 3 cut(s) | 162, 231, 509 |
| FbaI | TGATCA | 1 cut(s) | 211 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 570 |
| FokI | GGATG | 4 cut(s) | 149, 467, 492, 613 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 570 |
| FspBI | CTAG | 4 cut(s) | 171, 261, 300, 666 |
| GluI | GCNGC | 2 cut(s) | 141, 570 |
| Hin1II | CATG | 3 cut(s) | 166, 235, 513 |
| HindIII | AAGCTT | 1 cut(s) | 241 |
| HinfI | GANTC | 4 cut(s) | 323, 401, 688, 842 |
| Hpy166II | GTNNAC | 3 cut(s) | 391, 393, 813 |
| Hpy188I | TCNGA | 2 cut(s) | 155, 436 |
| Hpy188III | TCNNGA | 2 cut(s) | 366, 743 |
| Hpy8I | GTNNAC | 3 cut(s) | 391, 393, 813 |
| HpyAV | CCTTC | 1 cut(s) | 842 |
| HpyCH4III | ACNGT | 2 cut(s) | 533, 877 |
| HpyCH4V | TGCA | 5 cut(s) | 58, 419, 569, 585, 758 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 3 cut(s) | 318, 684, 848 |
| Hsp92II | CATG | 3 cut(s) | 166, 235, 513 |
| Ksp22I | TGATCA | 1 cut(s) | 211 |
| Kzo9I | GATC | 3 cut(s) | 211, 457, 745 |
| LpnPI | CCDG | 7 cut(s) | 183, 351, 405, 429, 558, 705, 758 |
| Lsp1109I | GCAGC | 2 cut(s) | 127, 581 |
| LweI | GCATC | 3 cut(s) | 127, 357, 745 |
| MaeI | CTAG | 4 cut(s) | 171, 261, 300, 666 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MalI | GATC | 3 cut(s) | 213, 459, 747 |
| MboI | GATC | 3 cut(s) | 211, 457, 745 |
| MboII | GAAGA | 1 cut(s) | 474 |
| MfeI | CAATTG | 1 cut(s) | 797 |
| MhlI | GDGCHC | 1 cut(s) | 872 |
| MluCI | AATT | 5 cut(s) | 35, 40, 201, 776, 797 |
| MlyI | GAGTC | 1 cut(s) | 851 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MnlI | CCTC | 2 cut(s) | 481, 642 |
| MroXI | GAANNNNTTC | 2 cut(s) | 172, 780 |
| MseI | TTAA | 3 cut(s) | 38, 342, 675 |
| MslI | CAYNNNNRTG | 1 cut(s) | 590 |
| MspA1I | CMGCKG | 1 cut(s) | 572 |
| MunI | CAATTG | 1 cut(s) | 797 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeII | GATC | 3 cut(s) | 211, 457, 745 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| NlaIII | CATG | 3 cut(s) | 166, 235, 513 |
| NmeAIII | GCCGAG | 1 cut(s) | 583 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| PdmI | GAANNNNTTC | 2 cut(s) | 172, 780 |
| PfeI | GAWTC | 3 cut(s) | 323, 401, 688 |
| PkrI | GCNGC | 2 cut(s) | 142, 571 |
| PleI | GAGTC | 1 cut(s) | 850 |
| PpsI | GAGTC | 1 cut(s) | 850 |
| PvuII | CAGCTG | 1 cut(s) | 572 |
| RsaI | GTAC | 3 cut(s) | 251, 392, 563 |
| RsaNI | GTAC | 3 cut(s) | 250, 391, 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 590 |
| SaqAI | TTAA | 3 cut(s) | 38, 342, 675 |
| SatI | GCNGC | 2 cut(s) | 141, 570 |
| Sau3AI | GATC | 3 cut(s) | 211, 457, 745 |
| SchI | GAGTC | 1 cut(s) | 851 |
| SduI | GDGCHC | 1 cut(s) | 872 |
| SfaNI | GCATC | 3 cut(s) | 127, 357, 745 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 590 |
| SmlI | CTYRAG | 2 cut(s) | 633, 767 |
| SmoI | CTYRAG | 2 cut(s) | 633, 767 |
| SpeI | ACTAGT | 2 cut(s) | 170, 665 |
| Sse9I | AATT | 5 cut(s) | 35, 40, 201, 776, 797 |
| SspMI | CTAG | 4 cut(s) | 171, 261, 300, 666 |
| StyI | CCWWGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 2 cut(s) | 533, 877 |
| TaqI | TCGA | 2 cut(s) | 460, 727 |
| TasI | AATT | 5 cut(s) | 35, 40, 201, 776, 797 |
| TatI | WGTACW | 2 cut(s) | 390, 561 |
| TfiI | GAWTC | 3 cut(s) | 323, 401, 688 |
| Tru1I | TTAA | 3 cut(s) | 38, 342, 675 |
| Tru9I | TTAA | 3 cut(s) | 38, 342, 675 |
| TscAI | CASTG | 1 cut(s) | 793 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 2 cut(s) | 140, 569 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 4 cut(s) | 17, 498, 617, 727 |
| TspRI | CASTG | 1 cut(s) | 793 |
| XapI | RAATTY | 1 cut(s) | 776 |
| XmnI | GAANNNNTTC | 2 cut(s) | 172, 780 |
| XspI | CTAG | 4 cut(s) | 171, 261, 300, 666 |