Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 55 - 121 | 1.5e-18 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 113 |
| AccI | GTMKAC | 1 cut(s) | 327 |
| AclWI | GGATC | 3 cut(s) | 77, 144, 317 |
| AcuI | CTGAAG | 1 cut(s) | 413 |
| AcyI | GRCGYC | 1 cut(s) | 110 |
| AfaI | GTAC | 1 cut(s) | 169 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 120, 197 |
| AgsI | TTSAA | 2 cut(s) | 98, 229 |
| AhlI | ACTAGT | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| AluBI | AGCT | 2 cut(s) | 187, 272 |
| AluI | AGCT | 2 cut(s) | 187, 272 |
| Alw26I | GTCTC | 2 cut(s) | 118, 368 |
| AlwI | GGATC | 3 cut(s) | 77, 144, 317 |
| Ama87I | CYCGRG | 1 cut(s) | 426 |
| AoxI | GGCC | 1 cut(s) | 129 |
| AvaI | CYCGRG | 1 cut(s) | 426 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BclI | TGATCA | 1 cut(s) | 76 |
| BcoDI | GTCTC | 2 cut(s) | 118, 368 |
| BcuI | ACTAGT | 1 cut(s) | 277 |
| BfaI | CTAG | 2 cut(s) | 278, 347 |
| Bme1390I | CCNGG | 1 cut(s) | 195 |
| BmeT110I | CYCGRG | 1 cut(s) | 426 |
| BmiI | GGNNCC | 1 cut(s) | 423 |
| BmrFI | CCNGG | 1 cut(s) | 195 |
| BpmI | CTGGAG | 1 cut(s) | 216 |
| BpuEI | CTTGAG | 1 cut(s) | 398 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| BsaHI | GRCGYC | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 120, 197 |
| Bse1I | ACTGG | 1 cut(s) | 335 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 120, 197 |
| BseNI | ACTGG | 1 cut(s) | 335 |
| BseRI | GAGGAG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 426 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 120, 197 |
| BsmAI | GTCTC | 2 cut(s) | 118, 368 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| BsnI | GGCC | 1 cut(s) | 131 |
| BsoBI | CYCGRG | 1 cut(s) | 426 |
| Bsp143I | GATC | 4 cut(s) | 76, 82, 136, 309 |
| Bsp19I | CCATGG | 1 cut(s) | 132 |
| BspANI | GGCC | 1 cut(s) | 131 |
| BspLI | GGNNCC | 1 cut(s) | 423 |
| BspPI | GGATC | 3 cut(s) | 77, 144, 317 |
| BsrI | ACTGG | 1 cut(s) | 335 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| BssMI | GATC | 4 cut(s) | 76, 82, 136, 309 |
| BssNI | GRCGYC | 1 cut(s) | 110 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 1 cut(s) | 167 |
| BstACI | GRCGYC | 1 cut(s) | 110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 1 cut(s) | 420 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstKTI | GATC | 4 cut(s) | 79, 85, 139, 312 |
| BstMAI | GTCTC | 2 cut(s) | 118, 368 |
| BstMBI | GATC | 4 cut(s) | 76, 82, 136, 309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 62, 338, 428 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstSCI | CCNGG | 1 cut(s) | 193 |
| BstX2I | RGATCY | 1 cut(s) | 82 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 305 |
| BstYI | RGATCY | 1 cut(s) | 82 |
| BsuRI | GGCC | 1 cut(s) | 131 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| BtsI | GCAGTG | 1 cut(s) | 111 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 1 cut(s) | 420 |
| Csp6I | GTAC | 1 cut(s) | 168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 76, 111 |
| CviAII | CATG | 2 cut(s) | 133, 171 |
| CviJI | RGCY | 8 cut(s) | 27, 56, 131, 187, 272, 401, 422, 431 |
| CviKI_1 | RGCY | 8 cut(s) | 27, 56, 131, 187, 272, 401, 422, 431 |
| CviQI | GTAC | 1 cut(s) | 168 |
| DpnI | GATC | 4 cut(s) | 78, 84, 138, 311 |
| DpnII | GATC | 4 cut(s) | 76, 82, 136, 309 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 413 |
| Eco88I | CYCGRG | 1 cut(s) | 426 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 2 cut(s) | 136, 174 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 2 cut(s) | 132, 170 |
| FbaI | TGATCA | 1 cut(s) | 76 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| FspBI | CTAG | 2 cut(s) | 278, 347 |
| GsuI | CTGGAG | 1 cut(s) | 216 |
| HaeIII | GGCC | 1 cut(s) | 131 |
| Hin1I | GRCGYC | 1 cut(s) | 110 |
| Hin1II | CATG | 2 cut(s) | 136, 174 |
| HinfI | GANTC | 1 cut(s) | 411 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 115, 212 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 140, 157, 229, 347 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| HpyAV | CCTTC | 1 cut(s) | 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 167 |
| HpyCH4IV | ACGT | 1 cut(s) | 110 |
| HpyCH4V | TGCA | 1 cut(s) | 320 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 62, 338, 428 |
| HpySE526I | ACGT | 1 cut(s) | 110 |
| Hsp92I | GRCGYC | 1 cut(s) | 110 |
| Hsp92II | CATG | 2 cut(s) | 136, 174 |
| Ksp22I | TGATCA | 1 cut(s) | 76 |
| Kzo9I | GATC | 4 cut(s) | 76, 82, 136, 309 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| LpnPI | CCDG | 8 cut(s) | 3, 8, 113, 180, 207, 348, 356, 404 |
| MaeI | CTAG | 2 cut(s) | 278, 347 |
| MaeII | ACGT | 1 cut(s) | 110 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 4 cut(s) | 78, 84, 138, 311 |
| MboI | GATC | 4 cut(s) | 76, 82, 136, 309 |
| MboII | GAAGA | 2 cut(s) | 110, 406 |
| MfeI | CAATTG | 1 cut(s) | 59 |
| MflI | RGATCY | 1 cut(s) | 82 |
| MluCI | AATT | 2 cut(s) | 59, 176 |
| MlyI | GAGTC | 1 cut(s) | 405 |
| MnlI | CCTC | 3 cut(s) | 31, 40, 191 |
| MseI | TTAA | 1 cut(s) | 240 |
| MspR9I | CCNGG | 1 cut(s) | 195 |
| MunI | CAATTG | 1 cut(s) | 59 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 62, 338, 428 |
| NcoI | CCATGG | 1 cut(s) | 132 |
| NdeII | GATC | 4 cut(s) | 76, 82, 136, 309 |
| NlaIII | CATG | 2 cut(s) | 136, 174 |
| NlaIV | GGNNCC | 1 cut(s) | 423 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| PleI | GAGTC | 1 cut(s) | 405 |
| PpsI | GAGTC | 1 cut(s) | 405 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 1 cut(s) | 423 |
| PsuI | RGATCY | 1 cut(s) | 82 |
| RsaI | GTAC | 1 cut(s) | 169 |
| RsaNI | GTAC | 1 cut(s) | 168 |
| SaqAI | TTAA | 1 cut(s) | 240 |
| Sau3AI | GATC | 4 cut(s) | 76, 82, 136, 309 |
| SchI | GAGTC | 1 cut(s) | 405 |
| ScrFI | CCNGG | 1 cut(s) | 195 |
| SetI | ASST | 7 cut(s) | 22, 95, 113, 189, 196, 274, 292 |
| SmlI | CTYRAG | 1 cut(s) | 413 |
| SmoI | CTYRAG | 1 cut(s) | 413 |
| SpeI | ACTAGT | 1 cut(s) | 277 |
| Sse9I | AATT | 2 cut(s) | 59, 176 |
| SspMI | CTAG | 2 cut(s) | 278, 347 |
| StyD4I | CCNGG | 1 cut(s) | 193 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 1 cut(s) | 167 |
| TaiI | ACGT | 1 cut(s) | 113 |
| TaqI | TCGA | 5 cut(s) | 156, 183, 274, 312, 388 |
| TasI | AATT | 2 cut(s) | 59, 176 |
| TatI | WGTACW | 1 cut(s) | 167 |
| Tru1I | TTAA | 1 cut(s) | 240 |
| Tru9I | TTAA | 1 cut(s) | 240 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspRI | CASTG | 1 cut(s) | 111 |
| XbaI | TCTAGA | 1 cut(s) | 346 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XspI | CTAG | 2 cut(s) | 278, 347 |
| ZraI | GACGTC | 1 cut(s) | 111 |