Rw1G017930

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000154
Physical Location & Seq
Reverse (-)
39623619 .. 39624020
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017930.1

Sequence Viewer

Length: 402 bp
ATGGAGAAGAGCAACTCATCTAGGAACCCTATTGTCTCTGGATTCAAGTTGATGAAAGATGAAAGTGGTGTGAAGGTGGACGCCACTATGTATAAGCAGGTTGTTGGCTGTTTGATGTACTTGGCAGCTACTAGGCCAGATCTCATGTATGTGATAAGTCTAATCAGCAGGTTTATGGGAAGTCCGACTGAGCTACACATGCAAGCAGTTAAAAGAGTCCTCAGGTATCTCAAAGGCACTGTTGATTTGGAGATTCTGTACAAACGAAATGGGAATGAGAAGCTTGAGGCATACACGGATAGTGACTACGCAGGTGATCTAGATGACCGGAGGAGCACATTCGGATACGTGTTTCTGCTTAGCACCGGTGCAGTTTCATGGTCTTCTAAAAGCAACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

8.97

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 302
Acc36I ACCTGC 3 cut(s) 88, 159, 302
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 119, 260
AflIII ACRYGT 1 cut(s) 348
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 3 cut(s) 128, 193, 283
AluI AGCT 3 cut(s) 128, 193, 283
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 137
BciVI GTATCC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 3 cut(s) 21, 132, 320
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 3 cut(s) 88, 159, 302
BfuI GTATCC 1 cut(s) 338
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 81
BsaWI WCCGGW 2 cut(s) 327, 365
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse118I RCCGGY 1 cut(s) 365
Bse21I CCTNAGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 180, 235
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 328, 366
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 2 cut(s) 139, 316
Bsp1720I GCTNAGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 181, 234
BspLI GGNNCC 1 cut(s) 26
BspMI ACCTGC 3 cut(s) 88, 159, 302
BspQI GCTCTTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 365
BssMI GATC 2 cut(s) 139, 316
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 189, 221, 359
BstKTI GATC 2 cut(s) 142, 319
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 139, 316
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 221
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 3 cut(s) 88, 159, 302
Cac8I GCNNGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 365
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 118, 259
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 3 cut(s) 145, 199, 378
CviJI RGCY 5 cut(s) 108, 128, 136, 193, 283
CviKI_1 RGCY 5 cut(s) 108, 128, 136, 193, 283
CviQI GTAC 2 cut(s) 118, 259
DdeI CTNAG 3 cut(s) 189, 221, 359
DpnI GATC 2 cut(s) 141, 318
DpnII GATC 2 cut(s) 139, 316
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco81I CCTNAGG 1 cut(s) 221
FaeI CATG 3 cut(s) 148, 202, 381
FaiI YATR 9 cut(s) 89, 93, 146, 150, 176, 200, 292, 379, 400
FatI CATG 3 cut(s) 144, 198, 377
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 3 cut(s) 21, 132, 320
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 328, 366
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 148, 202, 381
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 42, 216, 253
HpaII CCGG 2 cut(s) 328, 366
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 186, 344
Hpy188III TCNNGA 2 cut(s) 39, 320
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 202, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 3 cut(s) 189, 221, 359
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 148, 202, 381
Kzo9I GATC 2 cut(s) 139, 316
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 8 cut(s) 24, 83, 150, 154, 208, 297, 341, 379
Lsp1109I GCAGC 1 cut(s) 137
MaeI CTAG 3 cut(s) 21, 132, 320
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 141, 318
MboI GATC 2 cut(s) 139, 316
MboII GAAGA 2 cut(s) 19, 375
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 338
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 230, 280, 324
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 2 cut(s) 328, 366
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 2 cut(s) 139, 316
NlaIII CATG 3 cut(s) 148, 202, 381
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 2 cut(s) 42, 253
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 119, 260
RsaNI GTAC 2 cut(s) 118, 259
RseI CAYNNNNRTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 139, 316
SchI GAGTC 1 cut(s) 225
SduI GDGCHC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 398
SgrAI CRCCGGYG 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SspMI CTAG 3 cut(s) 21, 132, 320
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 351
TatI WGTACW 2 cut(s) 117, 258
TfiI GAWTC 2 cut(s) 42, 253
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 68, 75, 366
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 1 cut(s) 202
XspI CTAG 3 cut(s) 21, 132, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.