Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 9 - 82 | 3.6e-15 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 397 |
| AciI | CCGC | 3 cut(s) | 395, 397, 645 |
| AclWI | GGATC | 1 cut(s) | 434 |
| AcsI | RAATTY | 2 cut(s) | 65, 716 |
| AcuI | CTGAAG | 2 cut(s) | 534, 944 |
| AfaI | GTAC | 2 cut(s) | 437, 956 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 706 |
| AflII | CTTAAG | 1 cut(s) | 929 |
| AgsI | TTSAA | 5 cut(s) | 13, 208, 245, 433, 851 |
| AluBI | AGCT | 7 cut(s) | 62, 230, 493, 696, 881, 928, 964 |
| AluI | AGCT | 7 cut(s) | 62, 230, 493, 696, 881, 928, 964 |
| AlwI | GGATC | 1 cut(s) | 434 |
| AoxI | GGCC | 1 cut(s) | 75 |
| ApeKI | GCWGC | 4 cut(s) | 42, 416, 647, 881 |
| ApoI | RAATTY | 2 cut(s) | 65, 716 |
| AsuHPI | GGTGA | 5 cut(s) | 384, 467, 536, 625, 844 |
| BbvI | GCAGC | 4 cut(s) | 54, 428, 659, 868 |
| BccI | CCATC | 4 cut(s) | 205, 406, 452, 934 |
| BfaI | CTAG | 2 cut(s) | 227, 342 |
| BfmI | CTRYAG | 2 cut(s) | 627, 701 |
| BfrI | CTTAAG | 1 cut(s) | 929 |
| BglII | AGATCT | 1 cut(s) | 729 |
| BisI | GCNGC | 5 cut(s) | 43, 398, 417, 648, 882 |
| BlpI | GCTNAGC | 1 cut(s) | 692 |
| BlsI | GCNGC | 5 cut(s) | 44, 399, 418, 649, 883 |
| BmrI | ACTGGG | 1 cut(s) | 767 |
| BmsI | GCATC | 3 cut(s) | 526, 758, 904 |
| BmuI | ACTGGG | 1 cut(s) | 767 |
| BoxI | GACNNNNGTC | 1 cut(s) | 108 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 180, 212 |
| BpmI | CTGGAG | 3 cut(s) | 222, 297, 597 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 692 |
| BpuEI | CTTGAG | 2 cut(s) | 435, 651 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 706 |
| Bse118I | RCCGGY | 1 cut(s) | 38 |
| Bse1I | ACTGG | 2 cut(s) | 239, 773 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 541 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 706 |
| BseMII | CTCAG | 3 cut(s) | 141, 211, 522 |
| BseNI | ACTGG | 2 cut(s) | 239, 773 |
| BseXI | GCAGC | 4 cut(s) | 54, 428, 659, 868 |
| Bsh1236I | CGCG | 1 cut(s) | 397 |
| BshFI | GGCC | 1 cut(s) | 77 |
| BsiSI | CCGG | 1 cut(s) | 39 |
| BslFI | GGGAC | 1 cut(s) | 886 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 706 |
| BsmFI | GGGAC | 1 cut(s) | 886 |
| BsmI | GAATGC | 1 cut(s) | 693 |
| BsnI | GGCC | 1 cut(s) | 77 |
| Bsp143I | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 692 |
| BspACI | CCGC | 3 cut(s) | 395, 397, 645 |
| BspANI | GGCC | 1 cut(s) | 77 |
| BspCNI | CTCAG | 3 cut(s) | 142, 210, 523 |
| BspFNI | CGCG | 1 cut(s) | 397 |
| BspMAI | CTGCAG | 1 cut(s) | 631 |
| BspPI | GGATC | 1 cut(s) | 434 |
| BspTI | CTTAAG | 1 cut(s) | 929 |
| BsrFI | RCCGGY | 1 cut(s) | 38 |
| BsrI | ACTGG | 2 cut(s) | 239, 773 |
| BssAI | RCCGGY | 1 cut(s) | 38 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| Bst4CI | ACNGT | 1 cut(s) | 762 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstAFI | CTTAAG | 1 cut(s) | 929 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 755 |
| BstDEI | CTNAG | 4 cut(s) | 150, 197, 531, 692 |
| BstDSI | CCRYGG | 1 cut(s) | 395 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 704 |
| BstF5I | GGATG | 1 cut(s) | 541 |
| BstFNI | CGCG | 1 cut(s) | 397 |
| BstKTI | GATC | 5 cut(s) | 28, 429, 732, 869, 877 |
| BstMBI | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 151, 668, 755 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 108 |
| BstSFI | CTRYAG | 2 cut(s) | 627, 701 |
| BstUI | CGCG | 1 cut(s) | 397 |
| BstV1I | GCAGC | 4 cut(s) | 54, 428, 659, 868 |
| BstX2I | RGATCY | 2 cut(s) | 426, 729 |
| BstYI | RGATCY | 2 cut(s) | 426, 729 |
| BsuRI | GGCC | 1 cut(s) | 77 |
| BtgI | CCRYGG | 1 cut(s) | 395 |
| BtsCI | GGATG | 1 cut(s) | 541 |
| BtsIMutI | CAGTG | 2 cut(s) | 758, 780 |
| Cfr10I | RCCGGY | 1 cut(s) | 38 |
| Cfr42I | CCGCGG | 1 cut(s) | 398 |
| Csp6I | GTAC | 2 cut(s) | 436, 955 |
| CviAII | CATG | 4 cut(s) | 106, 385, 782, 803 |
| CviQI | GTAC | 2 cut(s) | 436, 955 |
| DdeI | CTNAG | 4 cut(s) | 150, 197, 531, 692 |
| DpnI | GATC | 5 cut(s) | 27, 428, 731, 868, 876 |
| DpnII | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco147I | AGGCCT | 1 cut(s) | 77 |
| Eco32I | GATATC | 1 cut(s) | 889 |
| Eco57I | CTGAAG | 2 cut(s) | 534, 944 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 704 |
| EcoRI | GAATTC | 1 cut(s) | 65 |
| EcoRV | GATATC | 1 cut(s) | 889 |
| FaeI | CATG | 4 cut(s) | 109, 388, 785, 806 |
| FaqI | GGGAC | 1 cut(s) | 886 |
| FatI | CATG | 4 cut(s) | 105, 384, 781, 802 |
| Fnu4HI | GCNGC | 5 cut(s) | 43, 398, 417, 648, 882 |
| FokI | GGATG | 1 cut(s) | 548 |
| Fsp4HI | GCNGC | 5 cut(s) | 43, 398, 417, 648, 882 |
| FspBI | CTAG | 2 cut(s) | 227, 342 |
| GluI | GCNGC | 5 cut(s) | 43, 398, 417, 648, 882 |
| GsuI | CTGGAG | 3 cut(s) | 222, 297, 597 |
| HaeIII | GGCC | 1 cut(s) | 77 |
| HapII | CCGG | 1 cut(s) | 39 |
| Hin1II | CATG | 4 cut(s) | 109, 388, 785, 806 |
| HindIII | AAGCTT | 1 cut(s) | 926 |
| HinfI | GANTC | 7 cut(s) | 159, 215, 289, 381, 389, 527, 616 |
| HpaII | CCGG | 1 cut(s) | 39 |
| HphI | GGTGA | 5 cut(s) | 384, 467, 536, 625, 844 |
| Hpy166II | GTNNAC | 1 cut(s) | 856 |
| Hpy188I | TCNGA | 4 cut(s) | 200, 333, 532, 924 |
| Hpy188III | TCNNGA | 8 cut(s) | 10, 208, 245, 276, 430, 552, 576, 824 |
| Hpy8I | GTNNAC | 1 cut(s) | 856 |
| Hpy99I | CGWCG | 1 cut(s) | 687 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 1 cut(s) | 762 |
| HpyCH4IV | ACGT | 1 cut(s) | 682 |
| HpyCH4V | TGCA | 7 cut(s) | 145, 185, 222, 476, 539, 629, 758 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 151, 668, 755 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 197, 531, 692 |
| HpySE526I | ACGT | 1 cut(s) | 682 |
| Hsp92II | CATG | 4 cut(s) | 109, 388, 785, 806 |
| KspI | CCGCGG | 1 cut(s) | 398 |
| Kzo9I | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| Lsp1109I | GCAGC | 4 cut(s) | 54, 428, 659, 868 |
| LweI | GCATC | 3 cut(s) | 526, 758, 904 |
| MaeI | CTAG | 2 cut(s) | 227, 342 |
| MaeII | ACGT | 1 cut(s) | 682 |
| MaeIII | GTNAC | 4 cut(s) | 390, 613, 737, 824 |
| MalI | GATC | 5 cut(s) | 27, 428, 731, 868, 876 |
| MboI | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| MboII | GAAGA | 4 cut(s) | 25, 28, 798, 883 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MflI | RGATCY | 2 cut(s) | 426, 729 |
| MluCI | AATT | 6 cut(s) | 33, 65, 89, 478, 486, 716 |
| MlyI | GAGTC | 3 cut(s) | 224, 398, 610 |
| MmeI | TCCRAC | 3 cut(s) | 240, 295, 964 |
| MnlI | CCTC | 6 cut(s) | 12, 67, 130, 168, 526, 970 |
| MseI | TTAA | 4 cut(s) | 254, 906, 930, 971 |
| MslI | CAYNNNNRTG | 1 cut(s) | 801 |
| MspA1I | CMGCKG | 1 cut(s) | 397 |
| MspCI | CTTAAG | 1 cut(s) | 929 |
| MspI | CCGG | 1 cut(s) | 39 |
| MunI | CAATTG | 1 cut(s) | 486 |
| Mva1269I | GAATGC | 1 cut(s) | 693 |
| MvnI | CGCG | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 151, 668, 755 |
| NdeII | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| NlaIII | CATG | 4 cut(s) | 109, 388, 785, 806 |
| NmuCI | GTSAC | 4 cut(s) | 390, 613, 737, 824 |
| PceI | AGGCCT | 1 cut(s) | 77 |
| PctI | GAATGC | 1 cut(s) | 693 |
| PfeI | GAWTC | 4 cut(s) | 159, 289, 381, 527 |
| PkrI | GCNGC | 5 cut(s) | 44, 399, 418, 649, 883 |
| PleI | GAGTC | 3 cut(s) | 223, 397, 610 |
| PpsI | GAGTC | 3 cut(s) | 223, 397, 610 |
| PshAI | GACNNNNGTC | 1 cut(s) | 108 |
| PstI | CTGCAG | 1 cut(s) | 631 |
| PsuI | RGATCY | 2 cut(s) | 426, 729 |
| RsaI | GTAC | 2 cut(s) | 437, 956 |
| RsaNI | GTAC | 2 cut(s) | 436, 955 |
| RseI | CAYNNNNRTG | 1 cut(s) | 801 |
| SacII | CCGCGG | 1 cut(s) | 398 |
| SaqAI | TTAA | 4 cut(s) | 254, 906, 930, 971 |
| SatI | GCNGC | 5 cut(s) | 43, 398, 417, 648, 882 |
| Sau3AI | GATC | 5 cut(s) | 25, 426, 729, 866, 874 |
| SchI | GAGTC | 3 cut(s) | 224, 398, 610 |
| SfaNI | GCATC | 3 cut(s) | 526, 758, 904 |
| SfcI | CTRYAG | 2 cut(s) | 627, 701 |
| Sfr303I | CCGCGG | 1 cut(s) | 398 |
| SgrBI | CCGCGG | 1 cut(s) | 398 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 801 |
| SmlI | CTYRAG | 3 cut(s) | 450, 666, 929 |
| SmoI | CTYRAG | 3 cut(s) | 450, 666, 929 |
| Sse9I | AATT | 6 cut(s) | 33, 65, 89, 478, 486, 716 |
| SseBI | AGGCCT | 1 cut(s) | 77 |
| SsiI | CCGC | 3 cut(s) | 395, 397, 645 |
| SspMI | CTAG | 2 cut(s) | 227, 342 |
| StuI | AGGCCT | 1 cut(s) | 77 |
| TaaI | ACNGT | 1 cut(s) | 762 |
| TaiI | ACGT | 1 cut(s) | 685 |
| TaqI | TCGA | 2 cut(s) | 685, 865 |
| TasI | AATT | 6 cut(s) | 33, 65, 89, 478, 486, 716 |
| TatI | WGTACW | 2 cut(s) | 435, 954 |
| TauI | GCSGC | 1 cut(s) | 400 |
| TfiI | GAWTC | 4 cut(s) | 159, 289, 381, 527 |
| Tru1I | TTAA | 4 cut(s) | 254, 906, 930, 971 |
| Tru9I | TTAA | 4 cut(s) | 254, 906, 930, 971 |
| TscAI | CASTG | 2 cut(s) | 765, 780 |
| TseFI | GTSAC | 4 cut(s) | 390, 613, 737, 824 |
| TseI | GCWGC | 4 cut(s) | 42, 416, 647, 881 |
| Tsp45I | GTSAC | 4 cut(s) | 390, 613, 737, 824 |
| TspDTI | ATGAA | 5 cut(s) | 373, 770, 791, 803, 965 |
| TspRI | CASTG | 2 cut(s) | 765, 780 |
| Vha464I | CTTAAG | 1 cut(s) | 929 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 704 |
| XapI | RAATTY | 2 cut(s) | 65, 716 |
| XspI | CTAG | 2 cut(s) | 227, 342 |