FvH4_7g21181

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000154
Physical Location & Seq
Forward (+)
17045447 .. 17047479
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21181.t1

Sequence Viewer

Length: 1266 bp
ATGGGATACCATTCGTATGGTGATGGCTTGGCAGCTAAAAAGGGTTGGGTTGTATATCAACTTGACGTTAAAAGTGCTTTTCTTCATGGTGAGTTAAATGAGGCTGTTTATGTGGAGCAACCACAGGGATATGAACGATGGGGTGAAGAACACAAGGTGTACAGGCTTAAGAAAGCATTGTATGGCTTGAAGCAAGCGCCACGGGCATGGTATAGCAGAATTGAAGCATATTTTGTGAAGGAAGGTTTTGAACGTTGCAGCTGTGAGCATACTTTGTTTGTCAAGTCAGAAGGAGGTAATCTTTTAATTGTGAGCTTATATGTTGACGATTTAATTTTTACTGGGAACAATGCAATCATGTTTGAAAAGTTTAAAACCTCCATGAAACATGAGTTCGATATGTCTGATTTGGGAAGGATGAAATACTTTCTTGGTGTTGAGGTTGTCCAAAGCTCTGAAGGTATTTATTTAAGTCAGAAGAAATATGCTCGGGAATTGATTGAGAAGTTTGGTATGGAGAAGAGTAATTCGGTGAAGAATCCGATTGTTCCTGGTTTTAGGCTGACAAAGGAAGGAGGTGGGGCTAGAGTTGATACTACTGTGTATAAGCAATTAATTGGGAGCCTCATGTATATTACAGCAACAAGGCCAGATTTAATGTTCGTAGTATGCCTCTTGAGCAGGTATATGGCTAATCCCACTGATTTACATATGCAAGCTGCTAAAAGGGTGTTACGGTACTTGAAAGGCACTGTGGACATGGGTGTTTTCTACAAAAGGGGAGGTGTTGAAGGACTGTTGGCATACACAGATAGCGACTATGCTGGAGATGTCGATGACAGGAAGAGTACGTCTGGTTATGTGTTCTTATTAGGTGGTGGAGCAGTCTCTTGGTCTTCAAGAAAACAACCGGTGACTCTATCCACCACTGAAGCAGAGTTTGTAGCAGCGGGTTCATGTGCTTGCCAATGTGTGTGGATGCGTAGAATACTGGAAAGGCTTGGTCATTCACAAGACAATTGTACTGTTGTGTTATGTGATAACAGCTCTACTATTAAACTGTCCAAGAACCCAGTCTTGCACGGGCGCAGCAAACATATAGACGTAAGGTTTCATTTCTTACGTGATTTGACTAGAGATGGAGTTGTTGAGCTGAAGCATTGTGGAACTCAAGAGCAAGTTGCAGATATTATGACTAAACCGCTTAAGCTGGAAGTATTCTTGAGGTTGAGAGACTGCTTGGTGTGTGTAAGGTACCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

422

Amino Acids

47.73

Weight (kDa)

8.91

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 10 - 183 1.8e-59 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 1254
AccB1I GGYRCC 1 cut(s) 1254
AciI CCGC 2 cut(s) 950, 1202
AclI AACGTT 1 cut(s) 253
AcuI CTGAAG 3 cut(s) 477, 951, 1175
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 5 cut(s) 161, 740, 850, 1024, 1256
AflII CTTAAG 2 cut(s) 167, 1205
AgeI ACCGGT 1 cut(s) 910
AgsI TTSAA 7 cut(s) 190, 224, 251, 365, 745, 791, 900
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 8 cut(s) 35, 261, 315, 453, 719, 1047, 1153, 1210
AluI AGCT 8 cut(s) 35, 261, 315, 453, 719, 1047, 1153, 1210
Alw26I GTCTC 2 cut(s) 892, 1227
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 5 cut(s) 32, 258, 719, 947, 1089
AseI ATTAAT 1 cut(s) 614
AsiGI ACCGGT 1 cut(s) 910
Asp718I GGTACC 1 cut(s) 1254
AspLEI GCGC 2 cut(s) 199, 1089
AsuHPI GGTGA 5 cut(s) 32, 101, 155, 544, 925
AvaI CYCGRG 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BanI GGYRCC 1 cut(s) 1254
BbsI GAAGAC 1 cut(s) 888
BbvI GCAGC 5 cut(s) 44, 270, 706, 959, 1101
BccI CCATC 3 cut(s) 17, 132, 1133
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 892, 1227
BfaI CTAG 2 cut(s) 585, 1134
BfoI RGCGCY 1 cut(s) 200
BfrI CTTAAG 2 cut(s) 167, 1205
BfuAI ACCTGC 1 cut(s) 672
BisI GCNGC 5 cut(s) 33, 259, 720, 948, 1090
BlsI GCNGC 5 cut(s) 34, 260, 721, 949, 1091
Bme1390I CCNGG 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 623, 1256
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 2 cut(s) 351, 1067
BmsI GCATC 1 cut(s) 969
BmuI ACTGGG 2 cut(s) 351, 1067
BpiI GAAGAC 1 cut(s) 888
BpmI CTGGAG 1 cut(s) 846
BpuEI CTTGAG 3 cut(s) 697, 1155, 1243
BsaAI YACGTR 1 cut(s) 1124
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 910
Bse118I RCCGGY 1 cut(s) 910
Bse1I ACTGG 3 cut(s) 346, 996, 1073
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 423, 984
BseNI ACTGG 3 cut(s) 346, 996, 1073
BseXI GCAGC 5 cut(s) 44, 270, 706, 959, 1101
BshFI GGCC 1 cut(s) 649
BshNI GGYRCC 1 cut(s) 1254
BshTI ACCGGT 1 cut(s) 910
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 1 cut(s) 911
BsmAI GTCTC 2 cut(s) 892, 1227
BsnI GGCC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 489
Bsp1407I TGTACA 1 cut(s) 159
BspACI CCGC 2 cut(s) 950, 1202
BspANI GGCC 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 623, 1256
BspMI ACCTGC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 1254
BspTI CTTAAG 2 cut(s) 167, 1205
BsrFI RCCGGY 1 cut(s) 910
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 3 cut(s) 346, 996, 1073
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 6 cut(s) 601, 738, 754, 798, 1027, 1062
Bst6I CTCTTC 2 cut(s) 515, 839
BstAFI CTTAAG 2 cut(s) 167, 1205
BstAUI TGTACA 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 1124
BstC8I GCNNGC 3 cut(s) 195, 717, 964
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 423, 984
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 2 cut(s) 199, 1089
BstMAI GTCTC 2 cut(s) 892, 1227
BstMWI GCNNNNNNNGC 2 cut(s) 203, 678
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstV1I GCAGC 5 cut(s) 44, 270, 706, 959, 1101
BstV2I GAAGAC 1 cut(s) 888
BstXI CCANNNNNNTGG 2 cut(s) 17, 207
BsuRI GGCC 1 cut(s) 649
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 423, 984
BtsIMutI CAGTG 3 cut(s) 699, 750, 927
BveI ACCTGC 1 cut(s) 672
Cac8I GCNNGC 3 cut(s) 195, 717, 964
CfoI GCGC 2 cut(s) 199, 1089
Cfr10I RCCGGY 1 cut(s) 910
Csp6I GTAC 5 cut(s) 160, 739, 849, 1023, 1255
CspAI ACCGGT 1 cut(s) 910
CspCI CAANNNNNGTGG 2 cut(s) 956, 991
CviAII CATG 8 cut(s) 86, 207, 358, 382, 389, 628, 760, 957
CviQI GTAC 5 cut(s) 160, 739, 849, 1023, 1255
DraI TTTAAA 1 cut(s) 373
DraIII CACNNNGTG 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 515, 839
EarI CTCTTC 2 cut(s) 515, 839
Eco57I CTGAAG 3 cut(s) 477, 951, 1175
Eco88I CYCGRG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 550
FaeI CATG 8 cut(s) 89, 210, 361, 385, 392, 631, 763, 960
FatI CATG 8 cut(s) 85, 206, 357, 381, 388, 627, 759, 956
FauI CCCGC 1 cut(s) 943
FauNDI CATATG 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 33, 259, 720, 948, 1090
FokI GGATG 2 cut(s) 430, 991
Fsp4HI GCNGC 5 cut(s) 33, 259, 720, 948, 1090
FspBI CTAG 2 cut(s) 585, 1134
GlaI GCGC 2 cut(s) 198, 1088
GluI GCNGC 5 cut(s) 33, 259, 720, 948, 1090
GsuI CTGGAG 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 911
HhaI GCGC 2 cut(s) 199, 1089
Hin1II CATG 8 cut(s) 89, 210, 361, 385, 392, 631, 763, 960
Hin6I GCGC 2 cut(s) 197, 1087
HinP1I GCGC 2 cut(s) 197, 1087
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 538, 916
HpaII CCGG 1 cut(s) 911
HphI GGTGA 5 cut(s) 32, 101, 155, 544, 925
Hpy166II GTNNAC 3 cut(s) 160, 325, 757
Hpy188I TCNGA 5 cut(s) 289, 406, 457, 477, 543
Hpy188III TCNNGA 5 cut(s) 491, 676, 900, 1172, 1222
Hpy8I GTNNAC 3 cut(s) 160, 325, 757
HpyAV CCTTC 7 cut(s) 232, 236, 284, 408, 452, 566, 785
HpyCH4III ACNGT 6 cut(s) 601, 738, 754, 798, 1027, 1062
HpyCH4IV ACGT 5 cut(s) 66, 253, 851, 1104, 1123
HpyCH4V TGCA 5 cut(s) 258, 353, 715, 1081, 1184
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 678
HpySE526I ACGT 5 cut(s) 66, 253, 851, 1104, 1123
Hsp92II CATG 8 cut(s) 89, 210, 361, 385, 392, 631, 763, 960
HspAI GCGC 2 cut(s) 197, 1087
KpnI GGTACC 1 cut(s) 1258
LmnI GCTCC 3 cut(s) 115, 621, 881
Lsp1109I GCAGC 5 cut(s) 44, 270, 706, 959, 1101
LweI GCATC 1 cut(s) 969
MaeI CTAG 2 cut(s) 585, 1134
MaeII ACGT 5 cut(s) 66, 253, 851, 1104, 1123
MaeIII GTNAC 2 cut(s) 732, 913
MboII GAAGA 7 cut(s) 74, 158, 490, 532, 547, 856, 888
MfeI CAATTG 1 cut(s) 1018
MluCI AATT 8 cut(s) 219, 306, 333, 494, 526, 611, 615, 1018
MlyI GAGTC 1 cut(s) 910
MnlI CCTC 9 cut(s) 94, 287, 388, 433, 569, 635, 683, 776, 1218
MslI CAYNNNNRTG 2 cut(s) 15, 205
MspA1I CMGCKG 2 cut(s) 261, 950
MspCI CTTAAG 2 cut(s) 167, 1205
MspI CCGG 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 203, 678
NdeI CATATG 1 cut(s) 711
NlaIII CATG 8 cut(s) 89, 210, 361, 385, 392, 631, 763, 960
NlaIV GGNNCC 2 cut(s) 623, 1256
NmuCI GTSAC 1 cut(s) 913
PfeI GAWTC 1 cut(s) 538
PinAI ACCGGT 1 cut(s) 910
PkrI GCNGC 5 cut(s) 34, 260, 721, 949, 1091
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
Ppu21I YACGTR 1 cut(s) 1124
PshBI ATTAAT 1 cut(s) 614
Psp1406I AACGTT 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 623, 1256
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 5 cut(s) 161, 740, 850, 1024, 1256
RsaNI GTAC 5 cut(s) 160, 739, 849, 1023, 1255
RseI CAYNNNNRTG 2 cut(s) 15, 205
SatI GCNGC 5 cut(s) 33, 259, 720, 948, 1090
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 1 cut(s) 552
SfaNI GCATC 1 cut(s) 969
SmiMI CAYNNNNRTG 2 cut(s) 15, 205
SmlI CTYRAG 5 cut(s) 167, 676, 1170, 1205, 1222
SmoI CTYRAG 5 cut(s) 167, 676, 1170, 1205, 1222
Sse9I AATT 8 cut(s) 219, 306, 333, 494, 526, 611, 615, 1018
SsiI CCGC 2 cut(s) 950, 1202
SspMI CTAG 2 cut(s) 585, 1134
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 6 cut(s) 601, 738, 754, 798, 1027, 1062
TaiI ACGT 5 cut(s) 69, 256, 854, 1107, 1126
TaqI TCGA 2 cut(s) 396, 834
TasI AATT 8 cut(s) 219, 306, 333, 494, 526, 611, 615, 1018
TatI WGTACW 2 cut(s) 159, 1022
TfiI GAWTC 1 cut(s) 538
TscAI CASTG 3 cut(s) 706, 757, 934
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 5 cut(s) 32, 258, 719, 947, 1089
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 6 cut(s) 74, 147, 398, 434, 945, 1103
TspRI CASTG 3 cut(s) 706, 757, 934
Vha464I CTTAAG 2 cut(s) 167, 1205
VspI ATTAAT 1 cut(s) 614
XspI CTAG 2 cut(s) 585, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.