pycom03g13960

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
15142062 .. 15142451
390 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13960.1

Sequence Viewer

Length: 390 bp
ATGGCTAAAGGGCCAGTTTGTTGGAGGTTCATTTTGCAGTCGTATGTTGCCTTGTCCACTACAGAGGCTGAATATATGGTTGTTGCTGAAGCTATAAAGGAGGCCATTTGGATACATAGACTGATTCGAGATTTGGGGGTTGATCAGAAACAGGTGGAGTTGCATTGTGATAGTCAGAGTGCCATTTATTTGGCTAAGTATCAGGTTCATCATGTGAGGACCAAGCACATAGATGTGCGTTATCACTTTGTTCGTGAAGTTGTTGGTGAATGGGATATCATTCTCCAGAAGATTCCAACTAAAGACAACCCCGCTGATATGTTGACTAAGGTTGTTGGTGTAGCCAAGTTTGTTCATTACTTGAACTTGGCTCACATTCTGCCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.93

Weight (kDa)

7.85

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 364
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 11, 102
AspS9I GGNCC 2 cut(s) 11, 219
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 219
BciVI GTATCC 1 cut(s) 105
BclI TGATCA 1 cut(s) 142
BfmI CTRYAG 1 cut(s) 60
BfuI GTATCC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 11, 219
BpmI CTGGAG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 14
BshFI GGCC 2 cut(s) 13, 104
BsnI GGCC 2 cut(s) 13, 104
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 13, 104
BsrI ACTGG 1 cut(s) 14
BssMI GATC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 195, 327
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 60
BstXI CCANNNNNNTGG 2 cut(s) 21, 190
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 13, 104
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 11, 219
CviAII CATG 1 cut(s) 212
CviJI RGCY 8 cut(s) 5, 13, 68, 92, 104, 194, 344, 371
CviKI_1 RGCY 8 cut(s) 5, 13, 68, 92, 104, 194, 344, 371
DdeI CTNAG 2 cut(s) 195, 327
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 277
FaeI CATG 1 cut(s) 215
FatI CATG 1 cut(s) 211
FauI CCCGC 1 cut(s) 319
FbaI TGATCA 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 13, 104
Hin1II CATG 1 cut(s) 215
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 124, 292
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 57, 324
Hpy188I TCNGA 2 cut(s) 147, 177
Hpy188III TCNNGA 3 cut(s) 128, 254, 286
Hpy8I GTNNAC 2 cut(s) 57, 324
HpyCH4V TGCA 2 cut(s) 37, 163
HpyF3I CTNAG 2 cut(s) 195, 327
Hsp92II CATG 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 27, 137, 188, 299
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 4 cut(s) 18, 58, 94, 210
MslI CAYNNNNRTG 2 cut(s) 231, 233
MspA1I CMGCKG 1 cut(s) 314
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 215
PfeI GAWTC 2 cut(s) 124, 292
PspPI GGNCC 2 cut(s) 11, 219
PstNI CAGNNNCTG 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 231, 233
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 11, 219
SetI ASST 5 cut(s) 29, 94, 156, 207, 333
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 231, 233
SsiI CCGC 1 cut(s) 312
TaqI TCGA 1 cut(s) 127
TfiI GAWTC 2 cut(s) 124, 292
TspDTI ATGAA 3 cut(s) 19, 197, 344
VpaK11BI GGWCC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.