Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 68 - 255 | 4.1e-31 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 390 - 469 | 5.3e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 512 - 566 | 1.1e-12 | GAG-pre-integrase domain |
| rve | PF00665 | 582 - 681 | 2.9e-13 | Integrase core domain |
| SH3_retrovirus | PF25597 | 755 - 819 | 4e-26 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 903 - 1145 | 7.2e-82 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2772 |
| Acc36I | ACCTGC | 1 cut(s) | 3122 |
| Acc65I | GGTACC | 1 cut(s) | 3867 |
| AccB1I | GGYRCC | 2 cut(s) | 1477, 3867 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2753 |
| AccI | GTMKAC | 2 cut(s) | 521, 903 |
| AciI | CCGC | 1 cut(s) | 3889 |
| AclWI | GGATC | 2 cut(s) | 142, 319 |
| AcuI | CTGAAG | 4 cut(s) | 311, 1628, 2160, 2532 |
| AfaI | GTAC | 8 cut(s) | 971, 1635, 1684, 1758, 1837, 2320, 3050, 3869 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1487, 2753, 3766, 3888 |
| AflII | CTTAAG | 2 cut(s) | 2777, 3077 |
| AflIII | ACRYGT | 1 cut(s) | 2584 |
| AgeI | ACCGGT | 1 cut(s) | 2878 |
| AhlI | ACTAGT | 1 cut(s) | 2315 |
| AjnI | CCWGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1620, 1652 |
| AleI | CACNNNNGTG | 3 cut(s) | 1017, 1766, 2156 |
| Alw21I | GWGCWC | 2 cut(s) | 263, 1401 |
| AlwI | GGATC | 2 cut(s) | 142, 319 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 137 |
| AoxI | GGCC | 2 cut(s) | 3536, 3890 |
| ApeKI | GCWGC | 7 cut(s) | 51, 929, 1094, 2290, 2921, 3554, 3756 |
| AseI | ATTAAT | 1 cut(s) | 641 |
| AsiGI | ACCGGT | 1 cut(s) | 2878 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 399 |
| Asp718I | GGTACC | 1 cut(s) | 3867 |
| AspLEI | GCGC | 2 cut(s) | 160, 364 |
| AspS9I | GGNCC | 3 cut(s) | 1775, 2603, 3584 |
| AsuHPI | GGTGA | 4 cut(s) | 158, 1976, 2031, 3115 |
| AsuII | TTCGAA | 1 cut(s) | 269 |
| AvaII | GGWCC | 3 cut(s) | 1775, 2603, 3584 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3851, 3884 |
| BanI | GGYRCC | 2 cut(s) | 1477, 3867 |
| BanII | GRGCYC | 1 cut(s) | 263 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 860, 892 |
| BbsI | GAAGAC | 2 cut(s) | 494, 1157 |
| Bbv12I | GWGCWC | 2 cut(s) | 263, 1401 |
| BbvI | GCAGC | 7 cut(s) | 63, 916, 1106, 2302, 2908, 3566, 3743 |
| BciT130I | CCWGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| BciVI | GTATCC | 2 cut(s) | 1303, 2828 |
| BclI | TGATCA | 2 cut(s) | 2617, 3004 |
| BcuI | ACTAGT | 1 cut(s) | 2315 |
| BfaI | CTAG | 7 cut(s) | 59, 615, 2094, 2316, 2886, 3150, 3591 |
| BfmI | CTRYAG | 3 cut(s) | 930, 1616, 2154 |
| BfoI | RGCGCY | 2 cut(s) | 161, 365 |
| BfrI | CTTAAG | 2 cut(s) | 2777, 3077 |
| BfuAI | ACCTGC | 1 cut(s) | 3122 |
| BfuI | GTATCC | 2 cut(s) | 1303, 2828 |
| BglII | AGATCT | 3 cut(s) | 113, 286, 2591 |
| BisI | GCNGC | 8 cut(s) | 52, 930, 1095, 2291, 2922, 3555, 3757, 3890 |
| BlsI | GCNGC | 8 cut(s) | 53, 931, 1096, 2292, 2923, 3556, 3758, 3891 |
| Bme1390I | CCNGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| Bme18I | GGWCC | 3 cut(s) | 1775, 2603, 3584 |
| BmgT120I | GGNCC | 3 cut(s) | 1775, 2603, 3584 |
| BmiI | GGNNCC | 5 cut(s) | 436, 1104, 1479, 1493, 3869 |
| BmrFI | CCNGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| BmrI | ACTGGG | 1 cut(s) | 3240 |
| BmsI | GCATC | 7 cut(s) | 343, 441, 1537, 1597, 3319, 3370, 3835 |
| BmuI | ACTGGG | 1 cut(s) | 3240 |
| BpiI | GAAGAC | 2 cut(s) | 494, 1157 |
| BpmI | CTGGAG | 3 cut(s) | 159, 211, 2147 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1098, 1473 |
| Bpu14I | TTCGAA | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 2 cut(s) | 676, 1053 |
| BsaBI | GATNNNNATC | 5 cut(s) | 167, 285, 1527, 1870, 2616 |
| BsaI | GGTCTC | 2 cut(s) | 1364, 3902 |
| BsaJI | CCNNGG | 8 cut(s) | 22, 357, 438, 1248, 2715, 3126, 3298, 3863 |
| BsaWI | WCCGGW | 1 cut(s) | 2878 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1388, 1418, 3805, 3835 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1487, 2753, 3766, 3888 |
| Bse118I | RCCGGY | 1 cut(s) | 2878 |
| Bse1I | ACTGG | 6 cut(s) | 1207, 1270, 2130, 2444, 2747, 3235 |
| Bse3DI | GCAATG | 6 cut(s) | 1035, 1696, 2682, 2700, 3276, 3687 |
| Bse8I | GATNNNNATC | 5 cut(s) | 167, 285, 1527, 1870, 2616 |
| BseBI | CCWGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| BseDI | CCNNGG | 8 cut(s) | 22, 357, 438, 1248, 2715, 3126, 3298, 3863 |
| BseGI | GGATG | 8 cut(s) | 207, 397, 1848, 2617, 3220, 3469, 3775, 3841 |
| BseJI | GATNNNNATC | 5 cut(s) | 167, 285, 1527, 1870, 2616 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1487, 2753, 3766, 3888 |
| BseMI | GCAATG | 6 cut(s) | 1035, 1696, 2682, 2700, 3276, 3687 |
| BseMII | CTCAG | 8 cut(s) | 143, 276, 774, 1112, 1937, 2484, 2526, 3614 |
| BseNI | ACTGG | 6 cut(s) | 1207, 1270, 2130, 2444, 2747, 3235 |
| BseRI | GAGGAG | 2 cut(s) | 156, 3420 |
| BseXI | GCAGC | 7 cut(s) | 63, 916, 1106, 2302, 2908, 3566, 3743 |
| BseYI | CCCAGC | 1 cut(s) | 3752 |
| BsgI | GTGCAG | 2 cut(s) | 83, 2907 |
| BshFI | GGCC | 2 cut(s) | 3538, 3892 |
| BshNI | GGYRCC | 2 cut(s) | 1477, 3867 |
| BshTI | ACCGGT | 1 cut(s) | 2878 |
| BsiHKAI | GWGCWC | 2 cut(s) | 263, 1401 |
| BsiSI | CCGG | 1 cut(s) | 2879 |
| BslFI | GGGAC | 2 cut(s) | 2450, 3871 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1487, 2753, 3766, 3888 |
| BsmFI | GGGAC | 2 cut(s) | 2450, 3871 |
| BsnI | GGCC | 2 cut(s) | 3538, 3892 |
| Bso31I | GGTCTC | 2 cut(s) | 1364, 3902 |
| Bsp119I | TTCGAA | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 2 cut(s) | 263, 1401 |
| Bsp1407I | TGTACA | 1 cut(s) | 3048 |
| Bsp19I | CCATGG | 1 cut(s) | 22 |
| BspACI | CCGC | 1 cut(s) | 3889 |
| BspANI | GGCC | 2 cut(s) | 3538, 3892 |
| BspCNI | CTCAG | 8 cut(s) | 144, 275, 775, 1111, 1938, 2485, 2527, 3615 |
| BspHI | TCATGA | 1 cut(s) | 345 |
| BspLI | GGNNCC | 5 cut(s) | 436, 1104, 1479, 1493, 3869 |
| BspMAI | CTGCAG | 2 cut(s) | 934, 2158 |
| BspMI | ACCTGC | 1 cut(s) | 3122 |
| BspPI | GGATC | 2 cut(s) | 142, 319 |
| BspQI | GCTCTTC | 1 cut(s) | 600 |
| BspT104I | TTCGAA | 1 cut(s) | 269 |
| BspT107I | GGYRCC | 2 cut(s) | 1477, 3867 |
| BspTI | CTTAAG | 2 cut(s) | 2777, 3077 |
| BspTNI | GGTCTC | 2 cut(s) | 1364, 3902 |
| BsrDI | GCAATG | 6 cut(s) | 1035, 1696, 2682, 2700, 3276, 3687 |
| BsrFI | RCCGGY | 1 cut(s) | 2878 |
| BsrGI | TGTACA | 1 cut(s) | 3048 |
| BsrI | ACTGG | 6 cut(s) | 1207, 1270, 2130, 2444, 2747, 3235 |
| BssAI | RCCGGY | 1 cut(s) | 2878 |
| BssECI | CCNNGG | 8 cut(s) | 22, 357, 438, 1248, 2715, 3126, 3298, 3863 |
| BssNAI | GTATAC | 1 cut(s) | 522 |
| BssT1I | CCWWGG | 5 cut(s) | 22, 357, 1248, 3126, 3298 |
| Bst1107I | GTATAC | 1 cut(s) | 522 |
| Bst2UI | CCWGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| Bst6I | CTCTTC | 4 cut(s) | 104, 600, 2562, 2985 |
| BstAFI | CTTAAG | 2 cut(s) | 2777, 3077 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2882 |
| BstAUI | TGTACA | 1 cut(s) | 3048 |
| BstBI | TTCGAA | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 5 cut(s) | 56, 956, 1001, 3084, 3559 |
| BstDSI | CCRYGG | 1 cut(s) | 22 |
| BstF5I | GGATG | 8 cut(s) | 207, 397, 1848, 2617, 3220, 3469, 3775, 3841 |
| BstH2I | RGCGCY | 2 cut(s) | 161, 365 |
| BstHHI | GCGC | 2 cut(s) | 160, 364 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 157, 1541, 2882, 2921, 3092 |
| BstNI | CCWGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| BstNSI | RCATGY | 2 cut(s) | 2588, 3889 |
| BstSCI | CCNGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| BstSFI | CTRYAG | 3 cut(s) | 930, 1616, 2154 |
| BstV1I | GCAGC | 7 cut(s) | 63, 916, 1106, 2302, 2908, 3566, 3743 |
| BstV2I | GAAGAC | 2 cut(s) | 494, 1157 |
| BstX2I | RGATCY | 4 cut(s) | 113, 134, 286, 2591 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1202, 2410, 3096 |
| BstYI | RGATCY | 4 cut(s) | 113, 134, 286, 2591 |
| BstZ17I | GTATAC | 1 cut(s) | 522 |
| BsuI | GTATCC | 2 cut(s) | 1303, 2828 |
| BsuRI | GGCC | 2 cut(s) | 3538, 3892 |
| BtgI | CCRYGG | 1 cut(s) | 22 |
| BtsCI | GGATG | 8 cut(s) | 207, 397, 1848, 2617, 3220, 3469, 3775, 3841 |
| BtsI | GCAGTG | 2 cut(s) | 2151, 2163 |
| BveI | ACCTGC | 1 cut(s) | 3122 |
| Cac8I | GCNNGC | 5 cut(s) | 56, 956, 1001, 3084, 3559 |
| CaiI | CAGNNNCTG | 1 cut(s) | 137 |
| CciI | TCATGA | 1 cut(s) | 345 |
| CfoI | GCGC | 2 cut(s) | 160, 364 |
| Cfr10I | RCCGGY | 1 cut(s) | 2878 |
| Cfr13I | GGNCC | 3 cut(s) | 1775, 2603, 3584 |
| CseI | GACGC | 1 cut(s) | 329 |
| Csp6I | GTAC | 8 cut(s) | 970, 1634, 1683, 1757, 1836, 2319, 3049, 3868 |
| CspAI | ACCGGT | 1 cut(s) | 2878 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1449, 1484 |
| CviQI | GTAC | 8 cut(s) | 970, 1634, 1683, 1757, 1836, 2319, 3049, 3868 |
| DraI | TTTAAA | 1 cut(s) | 2973 |
| Eam1104I | CTCTTC | 4 cut(s) | 104, 600, 2562, 2985 |
| EarI | CTCTTC | 4 cut(s) | 104, 600, 2562, 2985 |
| Ecl136II | GAGCTC | 1 cut(s) | 261 |
| Eco130I | CCWWGG | 5 cut(s) | 22, 357, 1248, 3126, 3298 |
| Eco24I | GRGCYC | 1 cut(s) | 263 |
| Eco31I | GGTCTC | 2 cut(s) | 1364, 3902 |
| Eco32I | GATATC | 3 cut(s) | 854, 2541, 3544 |
| Eco47I | GGWCC | 3 cut(s) | 1775, 2603, 3584 |
| Eco53kI | GAGCTC | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 4 cut(s) | 311, 1628, 2160, 2532 |
| EcoICRI | GAGCTC | 1 cut(s) | 261 |
| EcoRI | GAATTC | 2 cut(s) | 185, 3235 |
| EcoRII | CCWGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| EcoRV | GATATC | 3 cut(s) | 854, 2541, 3544 |
| EcoT14I | CCWWGG | 5 cut(s) | 22, 357, 1248, 3126, 3298 |
| EcoT22I | ATGCAT | 1 cut(s) | 3582 |
| EcoT38I | GRGCYC | 1 cut(s) | 263 |
| ErhI | CCWWGG | 5 cut(s) | 22, 357, 1248, 3126, 3298 |
| FaqI | GGGAC | 2 cut(s) | 2450, 3871 |
| FauNDI | CATATG | 2 cut(s) | 3600, 3661 |
| FbaI | TGATCA | 2 cut(s) | 2617, 3004 |
| FblI | GTMKAC | 2 cut(s) | 521, 903 |
| Fnu4HI | GCNGC | 8 cut(s) | 52, 930, 1095, 2291, 2922, 3555, 3757, 3890 |
| FokI | GGATG | 8 cut(s) | 214, 404, 1855, 2624, 3227, 3476, 3782, 3848 |
| FriOI | GRGCYC | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 8 cut(s) | 52, 930, 1095, 2291, 2922, 3555, 3757, 3890 |
| FspBI | CTAG | 7 cut(s) | 59, 615, 2094, 2316, 2886, 3150, 3591 |
| GlaI | GCGC | 2 cut(s) | 159, 363 |
| GluI | GCNGC | 8 cut(s) | 52, 930, 1095, 2291, 2922, 3555, 3757, 3890 |
| GsaI | CCCAGC | 1 cut(s) | 3756 |
| GsuI | CTGGAG | 3 cut(s) | 159, 211, 2147 |
| HaeII | RGCGCY | 2 cut(s) | 161, 365 |
| HaeIII | GGCC | 2 cut(s) | 3538, 3892 |
| HapII | CCGG | 1 cut(s) | 2879 |
| HgaI | GACGC | 1 cut(s) | 329 |
| HhaI | GCGC | 2 cut(s) | 160, 364 |
| Hin6I | GCGC | 2 cut(s) | 158, 362 |
| HinP1I | GCGC | 2 cut(s) | 158, 362 |
| HincII | GTYRAC | 4 cut(s) | 1144, 1560, 1600, 2149 |
| HindII | GTYRAC | 4 cut(s) | 1144, 1560, 1600, 2149 |
| HindIII | AAGCTT | 4 cut(s) | 2303, 2366, 2427, 3559 |
| HpaI | GTTAAC | 1 cut(s) | 1600 |
| HpaII | CCGG | 1 cut(s) | 2879 |
| HphI | GGTGA | 4 cut(s) | 158, 1976, 2031, 3115 |
| HpyAV | CCTTC | 8 cut(s) | 265, 292, 663, 929, 1116, 1317, 1831, 2507 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 157, 1541, 2882, 2921, 3092 |
| HspAI | GCGC | 2 cut(s) | 158, 362 |
| KpnI | GGTACC | 1 cut(s) | 3871 |
| Ksp22I | TGATCA | 2 cut(s) | 2617, 3004 |
| KspAI | GTTAAC | 1 cut(s) | 1600 |
| LguI | GCTCTTC | 1 cut(s) | 600 |
| LmnI | GCTCC | 6 cut(s) | 275, 380, 434, 1396, 2719, 3091 |
| Lsp1109I | GCAGC | 7 cut(s) | 63, 916, 1106, 2302, 2908, 3566, 3743 |
| LweI | GCATC | 7 cut(s) | 343, 441, 1537, 1597, 3319, 3370, 3835 |
| MaeI | CTAG | 7 cut(s) | 59, 615, 2094, 2316, 2886, 3150, 3591 |
| MaeIII | GTNAC | 6 cut(s) | 317, 1010, 1031, 1190, 1906, 3698 |
| MflI | RGATCY | 4 cut(s) | 113, 134, 286, 2591 |
| MhlI | GDGCHC | 2 cut(s) | 263, 1401 |
| MlyI | GAGTC | 7 cut(s) | 1565, 1700, 2375, 2477, 2536, 2988, 3496 |
| MmeI | TCCRAC | 4 cut(s) | 738, 2204, 3487, 3848 |
| Mph1103I | ATGCAT | 1 cut(s) | 3582 |
| MroXI | GAANNNNTTC | 1 cut(s) | 399 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1017, 1593, 1764, 1766, 2156 |
| MspA1I | CMGCKG | 1 cut(s) | 3756 |
| MspCI | CTTAAG | 2 cut(s) | 2777, 3077 |
| MspI | CCGG | 1 cut(s) | 2879 |
| MspR9I | CCNGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| MvaI | CCWGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 157, 1541, 2882, 2921, 3092 |
| NcoI | CCATGG | 1 cut(s) | 22 |
| NdeI | CATATG | 2 cut(s) | 3600, 3661 |
| NlaIV | GGNNCC | 5 cut(s) | 436, 1104, 1479, 1493, 3869 |
| NmuCI | GTSAC | 5 cut(s) | 317, 1010, 1031, 1906, 3698 |
| NsiI | ATGCAT | 1 cut(s) | 3582 |
| NspI | RCATGY | 2 cut(s) | 2588, 3889 |
| NspV | TTCGAA | 1 cut(s) | 269 |
| OliI | CACNNNNGTG | 3 cut(s) | 1017, 1766, 2156 |
| PagI | TCATGA | 1 cut(s) | 345 |
| PciI | ACATGT | 1 cut(s) | 2584 |
| PciSI | GCTCTTC | 1 cut(s) | 600 |
| PdmI | GAANNNNTTC | 1 cut(s) | 399 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2753 |
| PfoI | TCCNGGA | 1 cut(s) | 832 |
| PinAI | ACCGGT | 1 cut(s) | 2878 |
| PkrI | GCNGC | 8 cut(s) | 53, 931, 1096, 2292, 2923, 3556, 3758, 3891 |
| PleI | GAGTC | 7 cut(s) | 1564, 1700, 2375, 2477, 2535, 2987, 3495 |
| PpsI | GAGTC | 7 cut(s) | 1564, 1700, 2375, 2477, 2535, 2987, 3495 |
| PscI | ACATGT | 1 cut(s) | 2584 |
| PshBI | ATTAAT | 1 cut(s) | 641 |
| PsiI | TTATAA | 1 cut(s) | 2772 |
| Psp124BI | GAGCTC | 1 cut(s) | 263 |
| Psp6I | CCWGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| PspFI | CCCAGC | 1 cut(s) | 3752 |
| PspGI | CCWGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| PspN4I | GGNNCC | 5 cut(s) | 436, 1104, 1479, 1493, 3869 |
| PspPI | GGNCC | 3 cut(s) | 1775, 2603, 3584 |
| PstI | CTGCAG | 2 cut(s) | 934, 2158 |
| PstNI | CAGNNNCTG | 1 cut(s) | 137 |
| PsuI | RGATCY | 4 cut(s) | 113, 134, 286, 2591 |
| PvuII | CAGCTG | 1 cut(s) | 3756 |
| RsaI | GTAC | 8 cut(s) | 971, 1635, 1684, 1758, 1837, 2320, 3050, 3869 |
| RsaNI | GTAC | 8 cut(s) | 970, 1634, 1683, 1757, 1836, 2319, 3049, 3868 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1017, 1593, 1764, 1766, 2156 |
| SacI | GAGCTC | 1 cut(s) | 263 |
| SapI | GCTCTTC | 1 cut(s) | 600 |
| SatI | GCNGC | 8 cut(s) | 52, 930, 1095, 2291, 2922, 3555, 3757, 3890 |
| Sau96I | GGNCC | 3 cut(s) | 1775, 2603, 3584 |
| SchI | GAGTC | 7 cut(s) | 1565, 1700, 2375, 2477, 2536, 2988, 3496 |
| ScrFI | CCNGG | 8 cut(s) | 73, 439, 834, 2235, 2716, 2850, 3864, 3894 |
| SduI | GDGCHC | 2 cut(s) | 263, 1401 |
| SfaNI | GCATC | 7 cut(s) | 343, 441, 1537, 1597, 3319, 3370, 3835 |
| SfcI | CTRYAG | 3 cut(s) | 930, 1616, 2154 |
| SfuI | TTCGAA | 1 cut(s) | 269 |
| SinI | GGWCC | 3 cut(s) | 1775, 2603, 3584 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1017, 1593, 1764, 1766, 2156 |
| SmlI | CTYRAG | 4 cut(s) | 691, 1068, 2777, 3077 |
| SmoI | CTYRAG | 4 cut(s) | 691, 1068, 2777, 3077 |
| SpeI | ACTAGT | 1 cut(s) | 2315 |
| SsiI | CCGC | 1 cut(s) | 3889 |
| SspI | AATATT | 1 cut(s) | 2377 |
| SspMI | CTAG | 7 cut(s) | 59, 615, 2094, 2316, 2886, 3150, 3591 |
| SstI | GAGCTC | 1 cut(s) | 263 |
| StyD4I | CCNGG | 8 cut(s) | 71, 437, 832, 2233, 2714, 2848, 3862, 3892 |
| StyI | CCWWGG | 5 cut(s) | 22, 357, 1248, 3126, 3298 |
| TaqI | TCGA | 6 cut(s) | 255, 269, 314, 406, 573, 1957 |
| TatI | WGTACW | 4 cut(s) | 1682, 1835, 2318, 3048 |
| TauI | GCSGC | 1 cut(s) | 3892 |
| TseFI | GTSAC | 5 cut(s) | 317, 1010, 1031, 1906, 3698 |
| TseI | GCWGC | 7 cut(s) | 51, 929, 1094, 2290, 2921, 3554, 3756 |
| Tsp45I | GTSAC | 5 cut(s) | 317, 1010, 1031, 1906, 3698 |
| TspGWI | ACGGA | 2 cut(s) | 350, 3842 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2753 |
| Vha464I | CTTAAG | 2 cut(s) | 2777, 3077 |
| VpaK11BI | GGWCC | 3 cut(s) | 1775, 2603, 3584 |
| VspI | ATTAAT | 1 cut(s) | 641 |
| XbaI | TCTAGA | 1 cut(s) | 614 |
| XceI | RCATGY | 2 cut(s) | 2588, 3889 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1255, 2130 |
| XmiI | GTMKAC | 2 cut(s) | 521, 903 |
| XmnI | GAANNNNTTC | 1 cut(s) | 399 |
| XspI | CTAG | 7 cut(s) | 59, 615, 2094, 2316, 2886, 3150, 3591 |
| Zsp2I | ATGCAT | 1 cut(s) | 3582 |