Integrase core domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 50 | 3.1e-10 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 203 |
| AflIII | ACRYGT | 1 cut(s) | 288 |
| AgsI | TTSAA | 2 cut(s) | 41, 103 |
| AluBI | AGCT | 1 cut(s) | 307 |
| AluI | AGCT | 1 cut(s) | 307 |
| BaeGI | GKGCMC | 1 cut(s) | 334 |
| BccI | CCATC | 3 cut(s) | 53, 112, 173 |
| BfaI | CTAG | 1 cut(s) | 153 |
| BfmI | CTRYAG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 1 cut(s) | 31 |
| BsaWI | WCCGGW | 1 cut(s) | 250 |
| Bse1I | ACTGG | 1 cut(s) | 96 |
| BseDI | CCNNGG | 1 cut(s) | 31 |
| BseGI | GGATG | 1 cut(s) | 199 |
| BseNI | ACTGG | 1 cut(s) | 96 |
| BseSI | GKGCMC | 1 cut(s) | 334 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 1 cut(s) | 334 |
| BsrI | ACTGG | 1 cut(s) | 96 |
| BssECI | CCNNGG | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 1 cut(s) | 190 |
| Bst6I | CTCTTC | 1 cut(s) | 98 |
| BstF5I | GGATG | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstNSI | RCATGY | 1 cut(s) | 292 |
| BstSFI | CTRYAG | 1 cut(s) | 300 |
| BstSLI | GKGCMC | 1 cut(s) | 334 |
| BtsCI | GGATG | 1 cut(s) | 199 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 2 cut(s) | 89, 237 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CviAII | CATG | 1 cut(s) | 289 |
| CviJI | RGCY | 1 cut(s) | 307 |
| CviKI_1 | RGCY | 1 cut(s) | 307 |
| CviQI | GTAC | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 98 |
| EarI | CTCTTC | 1 cut(s) | 98 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| FaeI | CATG | 1 cut(s) | 292 |
| FaiI | YATR | 7 cut(s) | 71, 73, 87, 116, 257, 278, 290 |
| FatI | CATG | 1 cut(s) | 288 |
| FauNDI | CATATG | 1 cut(s) | 71 |
| FokI | GGATG | 1 cut(s) | 206 |
| FspBI | CTAG | 1 cut(s) | 153 |
| HapII | CCGG | 1 cut(s) | 251 |
| Hin1II | CATG | 1 cut(s) | 292 |
| HpaII | CCGG | 1 cut(s) | 251 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 58 |
| HpyCH4III | ACNGT | 1 cut(s) | 190 |
| HpyCH4IV | ACGT | 1 cut(s) | 200 |
| HpyCH4V | TGCA | 2 cut(s) | 89, 159 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpySE526I | ACGT | 1 cut(s) | 200 |
| Hsp92II | CATG | 1 cut(s) | 292 |
| LpnPI | CCDG | 2 cut(s) | 77, 264 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 1 cut(s) | 153 |
| MaeII | ACGT | 1 cut(s) | 200 |
| MaeIII | GTNAC | 2 cut(s) | 45, 265 |
| MboII | GAAGA | 3 cut(s) | 28, 115, 188 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MhlI | GDGCHC | 1 cut(s) | 334 |
| MluCI | AATT | 2 cut(s) | 127, 212 |
| MnlI | CCTC | 3 cut(s) | 45, 99, 284 |
| MseI | TTAA | 1 cut(s) | 135 |
| MslI | CAYNNNNRTG | 1 cut(s) | 188 |
| MspI | CCGG | 1 cut(s) | 251 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NdeI | CATATG | 1 cut(s) | 71 |
| NlaIII | CATG | 1 cut(s) | 292 |
| NmuCI | GTSAC | 1 cut(s) | 265 |
| NspI | RCATGY | 1 cut(s) | 292 |
| PciI | ACATGT | 1 cut(s) | 288 |
| PscI | ACATGT | 1 cut(s) | 288 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 188 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| SduI | GDGCHC | 1 cut(s) | 334 |
| SetI | ASST | 5 cut(s) | 56, 110, 203, 301, 309 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| SfcI | CTRYAG | 1 cut(s) | 300 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 188 |
| Sse9I | AATT | 2 cut(s) | 127, 212 |
| SspMI | CTAG | 1 cut(s) | 153 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TaaI | ACNGT | 1 cut(s) | 190 |
| TaiI | ACGT | 1 cut(s) | 203 |
| TasI | AATT | 2 cut(s) | 127, 212 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TscAI | CASTG | 2 cut(s) | 96, 244 |
| TseFI | GTSAC | 1 cut(s) | 265 |
| Tsp45I | GTSAC | 1 cut(s) | 265 |
| TspDTI | ATGAA | 3 cut(s) | 189, 210, 299 |
| TspRI | CASTG | 2 cut(s) | 96, 244 |
| XceI | RCATGY | 1 cut(s) | 292 |
| XspI | CTAG | 1 cut(s) | 153 |