Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000154

Physical Location & Seq

Genomic Coordinates Reverse (-)

66455131 .. 66455604

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGGTACTTCCTTGGTATTGAGGTGCTGCAAAGAGATGATGGAATTTATATTTGCCAAAGAAAGTATGCAATGGATGTGCTGAAACGGTTTGGAATGGAGAAGAGTAATGCAGTGCTCAATCCCATCGTTCCTGGTTCCAAAGTGAGCAAAGATGCAGATGGTGTTAAGGTGGATTCAACCTTTTACAAACAAGTTGTTGGTAGCCTTATGTATTTGACAGCTACTAGACCTGATTTAATGTTTGTTATGAGTCTTGTTAGTCGATATATGGGGCAGCCAACAGAGCTGCATTTGCAGGTAGTGAACAGAGTCTTGAGATACTTGAAAGGGACAATCAGCTTTGGAATTTTCTACAAGAAGGGAGGGAGTGAAAAATTGATTGCCTATGCCGACAGTGATTATGCCGGTGACATAGAAGACAGTAGAAGTACTTCGGGTTATGTTTTCTTACTAAGTTCGGGAGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

9.1

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 44	7.8e-06	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica	MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis	pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis	RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata	RLG00000026946
rosa_roxburghii	Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha	Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana	Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	45, 348
AfaI	GTAC	2 cut(s)	8, 433
AgsI	TTSAA	2 cut(s)	180, 328
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	224, 289, 342
AluI	AGCT	3 cut(s)	224, 289, 342
Alw21I	GWGCWC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	28, 277, 289
ApoI	RAATTY	2 cut(s)	45, 348
Asp700I	GAANNNNTTC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	422
BarI	GAAGNNNNNNTAC	2 cut(s)	418, 450
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	15, 276, 289
BccI	CCATC	3 cut(s)	35, 134, 155
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	29, 278, 290
BlsI	GCNGC	3 cut(s)	30, 279, 291
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	15, 276, 289
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	90, 398, 425
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 295
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	15, 276, 289
BstV2I	GAAGAC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 403
BveI	ACCTGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	7, 432
CviJI	RGCY	5 cut(s)	207, 224, 280, 289, 342
CviKI_1	RGCY	5 cut(s)	207, 224, 280, 289, 342
CviQI	GTAC	2 cut(s)	7, 432
DdeI	CTNAG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaqI	GGGAC	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	29, 278, 290
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	29, 278, 290
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	29, 278, 290
HapII	CCGG	1 cut(s)	408
HinfI	GANTC	3 cut(s)	176, 253, 312
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	316, 462
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	3 cut(s)	90, 398, 425
HpyCH4V	TGCA	6 cut(s)	31, 71, 113, 158, 292, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 295
HpyF3I	CTNAG	1 cut(s)	455
LpnPI	CCDG	5 cut(s)	120, 147, 246, 284, 421
Lsp1109I	GCAGC	3 cut(s)	15, 276, 289
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	410
MboII	GAAGA	2 cut(s)	115, 431
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	45, 348, 377
MlyI	GAGTC	2 cut(s)	262, 321
MnlI	CCTC	2 cut(s)	16, 359
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	2 cut(s)	168, 239
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	286, 295
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	30, 279, 291
PleI	GAGTC	2 cut(s)	261, 320
PpsI	GAGTC	2 cut(s)	261, 320
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	8, 433
RsaNI	GTAC	2 cut(s)	7, 432
SaqAI	TTAA	2 cut(s)	168, 239
SatI	GCNGC	3 cut(s)	29, 278, 290
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	2 cut(s)	262, 321
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	9 cut(s)	8, 27, 174, 185, 226, 235, 291, 303, 344
SfaNI	GCATC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	45, 348, 377
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	90, 398, 425
TaqI	TCGA	1 cut(s)	265
TasI	AATT	3 cut(s)	45, 348, 377
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	168, 239
Tru9I	TTAA	2 cut(s)	168, 239
TscAI	CASTG	2 cut(s)	120, 403
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	28, 277, 289
Tsp45I	GTSAC	1 cut(s)	410
TspRI	CASTG	2 cut(s)	120, 403
XapI	RAATTY	2 cut(s)	45, 348
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.