RchiOBHm_Chr5g0064011

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000154
Physical Location & Seq
Reverse (-)
69849448 .. 69850659
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34008

Sequence Viewer

Length: 879 bp
ATGACTGATATGGGGTTGATGACTTATTTTCTTAGTATTGAAGTGGTGCAAAGTGAGAAGGGGATTTTTATCTCACAAAGGAAGTATGCTAGGGACATTCTTAAACGTTTTAAGATGGAGTTTTGCAACCCAATCTTAACTCCAGTTGAACAGAGATTGAAATTGAAGAAAGATGGAAGTGGAGAGTTTGTTAATCCCACACGATACAAGCAACTTGTTGGGAGTTTGCGCTACTTGACGGCTACCAGACCTGACATCACATTTGGAGTTGGACTGATAAGCAGATTTATGGAGTCTCCTCGTCAGTCACATATGCAGGTAGCAAAAAGAATATTGAGATATGTCAAAGGAACTCAAAGTGATGGTATTTTGTATGCAGCTCACTGTCTGAATGAACTTGTTGGATACACAGATAGTGATTGGGCAGGAGATGAAAAGGCAAAGAGCACTTCAGGCTATGTTTTTGATATTGGTTCTGGTGTTATATGTTGGTCTTCAAAGAAGCAGCAAGTGGTAGCACTTTCATCTGCTGAAGCAGAGTATGTTGCAGCAAATAGGTGTGCTACTCATGCAATTTGGCTGCGTCGAATTCTTGGAAACTTGCACCAAGAACAGAAAAATCCTACAACAATCTTCTGTGATAATAACTCAGCAATCTCATTGTCAAAGAATCCAGTTTTTCATGAGAGGACAAAGCATATTCATGCCAAGCATCATTACATTCGAGATTTGGTGAACATGAAAGAGGTTGCAGTTCACTATTGTCCATCTGGAGATCAGGTAGCTGATATATTTACAAAGCCTCTAAAAACAGTTGCTTTCTTGAAGCTGAAGGAGCTAATGGGGATGATGAAGTATGAAGATCTCGGCTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

292

Amino Acids

33.16

Weight (kDa)

9.3

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 50 7.6e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AclI AACGTT 1 cut(s) 106
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 3 cut(s) 435, 552, 851
AgsI TTSAA 6 cut(s) 41, 149, 160, 166, 498, 826
AluBI AGCT 4 cut(s) 380, 785, 829, 838
AluI AGCT 4 cut(s) 380, 785, 829, 838
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 300
ApeKI GCWGC 4 cut(s) 377, 505, 548, 580
ApoI RAATTY 1 cut(s) 588
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 389, 517, 560, 567
BccI CCATC 4 cut(s) 109, 167, 356, 775
BceAI ACGGC 1 cut(s) 255
BciVI GTATCC 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 398
BglII AGATCT 1 cut(s) 862
BisI GCNGC 4 cut(s) 378, 506, 549, 581
BlsI GCNGC 4 cut(s) 379, 507, 550, 582
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 126, 792
BsaBI GATNNNNATC 1 cut(s) 68
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 765, 795
Bse1I ACTGG 2 cut(s) 143, 674
Bse8I GATNNNNATC 1 cut(s) 68
BseGI GGATG 1 cut(s) 852
BseJI GATNNNNATC 1 cut(s) 68
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 143, 674
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 389, 517, 560, 567
BsiHKAI GWGCWC 1 cut(s) 449
BslFI GGGAC 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 2 cut(s) 775, 862
BspCNI CTCAG 1 cut(s) 662
BspHI TCATGA 1 cut(s) 682
BspMI ACCTGC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 143, 674
BssMI GATC 2 cut(s) 775, 862
Bst4CI ACNGT 2 cut(s) 386, 814
BstDEI CTNAG 2 cut(s) 32, 649
BstF5I GGATG 1 cut(s) 852
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 778, 865
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 775, 862
BstMWI GCNNNNNNNGC 3 cut(s) 453, 569, 835
BstV1I GCAGC 4 cut(s) 389, 517, 560, 567
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuI GTATCC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 852
BtsIMutI CAGTG 1 cut(s) 382
BveI ACCTGC 1 cut(s) 307
CciI TCATGA 1 cut(s) 682
CfoI GCGC 1 cut(s) 231
CseI GACGC 1 cut(s) 572
CviAII CATG 4 cut(s) 569, 683, 704, 739
CviJI RGCY 9 cut(s) 242, 380, 456, 580, 785, 802, 829, 838, 870
CviKI_1 RGCY 9 cut(s) 242, 380, 456, 580, 785, 802, 829, 838, 870
DdeI CTNAG 2 cut(s) 32, 649
DpnI GATC 2 cut(s) 777, 864
DpnII GATC 2 cut(s) 775, 862
Eco57I CTGAAG 3 cut(s) 435, 552, 851
EcoRI GAATTC 1 cut(s) 588
FaeI CATG 4 cut(s) 572, 686, 707, 742
FaqI GGGAC 1 cut(s) 107
FatI CATG 4 cut(s) 568, 682, 703, 738
FauNDI CATATG 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 378, 506, 549, 581
FokI GGATG 1 cut(s) 859
Fsp4HI GCNGC 4 cut(s) 378, 506, 549, 581
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 230
GluI GCNGC 4 cut(s) 378, 506, 549, 581
GsuI CTGGAG 2 cut(s) 126, 792
HgaI GACGC 1 cut(s) 572
HhaI GCGC 1 cut(s) 231
Hin1II CATG 4 cut(s) 572, 686, 707, 742
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 2 cut(s) 293, 670
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 2 cut(s) 736, 757
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 4 cut(s) 683, 725, 771, 823
Hpy8I GTNNAC 2 cut(s) 736, 757
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 52, 826
HpyCH4III ACNGT 2 cut(s) 386, 814
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 8 cut(s) 49, 126, 316, 377, 548, 572, 604, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 453, 569, 835
HpyF3I CTNAG 2 cut(s) 32, 649
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 4 cut(s) 572, 686, 707, 742
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 775, 862
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 4 cut(s) 389, 517, 560, 567
LweI GCATC 1 cut(s) 721
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 306
MalI GATC 2 cut(s) 777, 864
MboI GATC 2 cut(s) 775, 862
MboII GAAGA 4 cut(s) 178, 486, 625, 872
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 3 cut(s) 161, 573, 588
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 250, 382
MnlI CCTC 4 cut(s) 309, 681, 739, 813
MseI TTAA 5 cut(s) 102, 111, 137, 192, 877
MslI CAYNNNNRTG 1 cut(s) 702
MwoI GCNNNNNNNGC 3 cut(s) 453, 569, 835
NdeI CATATG 1 cut(s) 312
NdeII GATC 2 cut(s) 775, 862
NlaIII CATG 4 cut(s) 572, 686, 707, 742
NmeAIII GCCGAG 1 cut(s) 846
NmuCI GTSAC 1 cut(s) 306
PagI TCATGA 1 cut(s) 682
PfeI GAWTC 1 cut(s) 670
PkrI GCNGC 4 cut(s) 379, 507, 550, 582
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 106
PsuI RGATCY 1 cut(s) 862
RseI CAYNNNNRTG 1 cut(s) 702
SaqAI TTAA 5 cut(s) 102, 111, 137, 192, 877
SatI GCNGC 4 cut(s) 378, 506, 549, 581
Sau3AI GATC 2 cut(s) 775, 862
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 702
Sse9I AATT 3 cut(s) 161, 573, 588
SspI AATATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 386, 814
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 586, 724
TasI AATT 3 cut(s) 161, 573, 588
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 5 cut(s) 102, 111, 137, 192, 877
Tru9I TTAA 5 cut(s) 102, 111, 137, 192, 877
TscAI CASTG 1 cut(s) 389
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 4 cut(s) 377, 505, 548, 580
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 8 cut(s) 408, 447, 513, 671, 692, 755, 866, 873
TspRI CASTG 1 cut(s) 389
XapI RAATTY 1 cut(s) 588
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.