Rw7G015300

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000154
Physical Location & Seq
Forward (+)
15397817 .. 15399916
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015300.1

Sequence Viewer

Length: 1179 bp
ATGAGTGAGGATAAAAGTTATACAAAAATCCCTCATTTTGATGGCGTCCACTATGACCATTGGGGAGAGCTGATGGAAAACTTCCTCAGATCGAAGGGATTATGGAGCCTTATAGAGAATGGTTTCGAGGAACCAAAAGCTGGAACAGGGTTGATAGATGCGCAGCTATCGTTGTTGGATGATGCAAGGACCAAGGATCACAAGGTGAAGCACTACCTGTACCAGGCCATTGACAGAGTCACTTTCGAGCAAATTCTGGACAGACACAACTCAAAGGCTGTCTGGGACTCACTGAAGAGGAAATTTGGTGGGAATGCTCGAGTTAAGAGGTCTCTTCTTCAAGCTTTGAGAAGAGACTTTGAGGTGTTGGAGATGAAGAAAAGCAAGACAATCACTGAATATTTTGCTAGGGTCATGGTTGTGGCAAACAAAATGAGGAGCAATGGTGAAACCATGCCGGATTCCAAAGTGGTAGAGAAGATCTTGAGAACGTTGACTGAGAGATTCACCTATGTAGTGGTGTCCATCGAGGATTCACTGGTGGTTCATGAGCAGAAGTTCCACAGGCTGAATCAAGAAGAAGAAGAAGATCAGGCCTTGAAGATTGAAGATCGATGTCACAATCTTGGACACTTTCATTACGAATGTCTGAAGTGGAACAAAGAGGCCAATTATGCGCAGCTTGATGAAGAAGATGAGCTGCTCCTAATGTCATATGTGGAGATGCATGAGGCAAAGAGGAGCGATGCTTGGTTCCTAGATTCTGGGTGCTCAAATCATATGTGTGGTGATCGAGGTATGTTTTTGATTTTGGATGTTAGTTTTACACATTCAGTCAAGCTTGGAAATAACATTAGGATGAGTGCGGTTGGGAAGGGAAGTATAAGACTAGTGTTCAATGGTGCTGCCTTTGTTGTTGGAGATGTGTATTATGTTCCAGATCTTAGGAACAATCTTTTTAGCATTGGGCAGCTACAGGAAAAGGGTTTGGCAATCATGATCCGAGATGGAGCATGCAGCATTTACCATCCACAAAGAGGGCTGATTGTGTACACCCTGATGAGTGCTAATCGTATGTTCATCATCCTGAATGAAGCTTCAGCCTCTACAAAATCTCTCCCTCGACTAGAAGAATGTTTTCATACAAGCTCCTCGGATTTGACACACCTGTGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

392

Amino Acids

45.26

Weight (kDa)

6.32

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 25 - 179 1.3e-21 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 251 - 329 3.7e-25 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 162, 678
AccB7I CCANNNNNTGG 1 cut(s) 140
AciI CCGC 1 cut(s) 866
AclI AACGTT 1 cut(s) 491
AclWI GGATC 2 cut(s) 204, 994
AcsI RAATTY 2 cut(s) 252, 302
AcuI CTGAAG 3 cut(s) 314, 671, 1083
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 205
AfaI GTAC 2 cut(s) 221, 1052
AfiI CCNNNNNNNGG 3 cut(s) 140, 223, 1037
AgsI TTSAA 4 cut(s) 341, 601, 608, 898
AhlI ACTAGT 1 cut(s) 889
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 1168
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 2 cut(s) 336, 348
AlwI GGATC 2 cut(s) 204, 994
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 3 cut(s) 225, 594, 666
ApeKI GCWGC 6 cut(s) 163, 679, 700, 905, 970, 1017
ApoI RAATTY 2 cut(s) 252, 302
Asp700I GAANNNNTTC 2 cut(s) 122, 1137
AspLEI GCGC 2 cut(s) 163, 679
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 217, 458, 499, 800
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 6 cut(s) 175, 687, 691, 892, 982, 1029
BccI CCATC 5 cut(s) 35, 67, 533, 1001, 1035
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 336, 348
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 5 cut(s) 408, 758, 890, 1127, 1177
BfmI CTRYAG 1 cut(s) 974
BglII AGATCT 2 cut(s) 480, 940
BisI GCNGC 6 cut(s) 164, 680, 701, 906, 971, 1018
BlsI GCNGC 6 cut(s) 165, 681, 702, 907, 972, 1019
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 3 cut(s) 107, 132, 755
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 4 cut(s) 148, 172, 714, 736
BpuEI CTTGAG 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 192, 1152
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 223, 1037
Bse1I ACTGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 613
BseDI CCNNGG 2 cut(s) 192, 1152
BseGI GGATG 5 cut(s) 184, 820, 864, 1027, 1083
BseLI CCNNNNNNNGG 3 cut(s) 140, 223, 1037
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 100, 489
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 3 cut(s) 451, 754, 1141
BseXI GCAGC 6 cut(s) 175, 687, 691, 892, 982, 1029
BshFI GGCC 3 cut(s) 227, 596, 668
BshVI ATCGAT 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 140, 223, 1037
BsmAI GTCTC 2 cut(s) 336, 348
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 3 cut(s) 227, 596, 668
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 773
Bsp1407I TGTACA 1 cut(s) 1050
Bsp143I GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
BspACI CCGC 1 cut(s) 866
BspANI GGCC 3 cut(s) 227, 596, 668
BspCNI CTCAG 2 cut(s) 99, 490
BspDI ATCGAT 1 cut(s) 613
BspHI TCATGA 2 cut(s) 547, 996
BspLI GGNNCC 3 cut(s) 107, 132, 755
BspPI GGATC 2 cut(s) 204, 994
BspTNI GGTCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 448
BsrGI TGTACA 1 cut(s) 1050
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 192, 1152
BssMI GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 224
Bst6I CTCTTC 3 cut(s) 290, 339, 346
BstACI GRCGYC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 1050
BstC8I GCNNGC 1 cut(s) 1015
BstDEI CTNAG 3 cut(s) 86, 498, 944
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 5 cut(s) 184, 820, 864, 1027, 1083
BstHHI GCGC 2 cut(s) 163, 679
BstKTI GATC 8 cut(s) 92, 199, 483, 592, 613, 793, 943, 1002
BstMAI GTCTC 2 cut(s) 336, 348
BstMBI GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 1017
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 974
BstV1I GCAGC 6 cut(s) 175, 687, 691, 892, 982, 1029
BstX2I RGATCY 2 cut(s) 480, 940
BstYI RGATCY 2 cut(s) 480, 940
Bsu15I ATCGAT 1 cut(s) 613
BsuRI GGCC 3 cut(s) 227, 596, 668
BsuTUI ATCGAT 1 cut(s) 613
BtgZI GCGATG 1 cut(s) 759
BtsCI GGATG 5 cut(s) 184, 820, 864, 1027, 1083
BtsIMutI CAGTG 3 cut(s) 290, 393, 536
Cac8I GCNNGC 1 cut(s) 1015
CciI TCATGA 2 cut(s) 547, 996
CfoI GCGC 2 cut(s) 163, 679
Cfr13I GGNCC 1 cut(s) 189
ClaI ATCGAT 1 cut(s) 613
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 220, 1051
CviAII CATG 6 cut(s) 415, 454, 548, 728, 997, 1014
CviQI GTAC 2 cut(s) 220, 1051
DdeI CTNAG 3 cut(s) 86, 498, 944
DpnI GATC 8 cut(s) 91, 198, 482, 591, 612, 792, 942, 1001
DpnII GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
DraIII CACNNNGTG 1 cut(s) 205
Eam1104I CTCTTC 3 cut(s) 290, 339, 346
EarI CTCTTC 3 cut(s) 290, 339, 346
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 596
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 3 cut(s) 314, 671, 1083
Eco88I CYCGRG 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 418, 457, 551, 731, 1000, 1017
FaqI GGGAC 1 cut(s) 299
FatI CATG 6 cut(s) 414, 453, 547, 727, 996, 1013
FauNDI CATATG 2 cut(s) 715, 780
Fnu4HI GCNGC 6 cut(s) 164, 680, 701, 906, 971, 1018
FokI GGATG 5 cut(s) 191, 827, 871, 1014, 1070
Fsp4HI GCNGC 6 cut(s) 164, 680, 701, 906, 971, 1018
FspBI CTAG 5 cut(s) 408, 758, 890, 1127, 1177
FspI TGCGCA 2 cut(s) 162, 678
GlaI GCGC 2 cut(s) 162, 678
GluI GCNGC 6 cut(s) 164, 680, 701, 906, 971, 1018
HaeIII GGCC 3 cut(s) 227, 596, 668
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 163, 679
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 6 cut(s) 418, 457, 551, 731, 1000, 1017
Hin6I GCGC 2 cut(s) 161, 677
HinP1I GCGC 2 cut(s) 161, 677
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HindIII AAGCTT 3 cut(s) 342, 839, 1095
HinfI GANTC 7 cut(s) 237, 287, 461, 504, 533, 571, 761
HpaII CCGG 1 cut(s) 458
HphI GGTGA 4 cut(s) 217, 458, 499, 800
Hpy166II GTNNAC 4 cut(s) 49, 495, 1051, 1053
Hpy188I TCNGA 4 cut(s) 89, 651, 1004, 1156
Hpy188III TCNNGA 7 cut(s) 257, 484, 548, 575, 938, 997, 1087
Hpy8I GTNNAC 4 cut(s) 49, 495, 1051, 1053
HpyAV CCTTC 2 cut(s) 88, 868
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 3 cut(s) 185, 727, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 3 cut(s) 86, 498, 944
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 6 cut(s) 418, 457, 551, 731, 1000, 1017
HspAI GCGC 2 cut(s) 161, 677
Kzo9I GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
LmnI GCTCC 6 cut(s) 105, 438, 708, 741, 1010, 1154
Lsp1109I GCAGC 6 cut(s) 175, 687, 691, 892, 982, 1029
LweI GCATC 4 cut(s) 148, 172, 714, 736
MaeI CTAG 5 cut(s) 408, 758, 890, 1127, 1177
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 238, 617
MalI GATC 8 cut(s) 91, 198, 482, 591, 612, 792, 942, 1001
MboI GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
MflI RGATCY 2 cut(s) 480, 940
MhlI GDGCHC 1 cut(s) 773
MluCI AATT 3 cut(s) 252, 302, 670
MlyI GAGTC 2 cut(s) 246, 281
MmeI TCCRAC 3 cut(s) 156, 348, 898
Mph1103I ATGCAT 1 cut(s) 729
MroXI GAANNNNTTC 2 cut(s) 122, 1137
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 6 cut(s) 39, 419, 783, 857, 1058, 1168
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeI CATATG 2 cut(s) 715, 780
NdeII GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
NlaIII CATG 6 cut(s) 418, 457, 551, 731, 1000, 1017
NlaIV GGNNCC 3 cut(s) 107, 132, 755
NmuCI GTSAC 2 cut(s) 238, 617
NsbI TGCGCA 2 cut(s) 162, 678
NsiI ATGCAT 1 cut(s) 729
NspI RCATGY 1 cut(s) 1017
OliI CACNNNNGTG 1 cut(s) 1168
PaeI GCATGC 1 cut(s) 1017
PaeR7I CTCGAG 1 cut(s) 318
PagI TCATGA 2 cut(s) 547, 996
PceI AGGCCT 1 cut(s) 596
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 2 cut(s) 122, 1137
PfeI GAWTC 5 cut(s) 461, 504, 533, 571, 761
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 6 cut(s) 165, 681, 702, 907, 972, 1019
PleI GAGTC 2 cut(s) 245, 281
PpsI GAGTC 2 cut(s) 245, 281
Psp1406I AACGTT 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 107, 132, 755
PspPI GGNCC 1 cut(s) 189
PspXI VCTCGAGB 1 cut(s) 318
PsuI RGATCY 2 cut(s) 480, 940
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 2 cut(s) 221, 1052
RsaNI GTAC 2 cut(s) 220, 1051
RseI CAYNNNNRTG 6 cut(s) 39, 419, 783, 857, 1058, 1168
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 6 cut(s) 164, 680, 701, 906, 971, 1018
Sau3AI GATC 8 cut(s) 89, 196, 480, 589, 610, 790, 940, 999
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 2 cut(s) 246, 281
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 773
SfaNI GCATC 4 cut(s) 148, 172, 714, 736
SfcI CTRYAG 1 cut(s) 974
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 318
SmiMI CAYNNNNRTG 6 cut(s) 39, 419, 783, 857, 1058, 1168
SmlI CTYRAG 2 cut(s) 318, 484
SmoI CTYRAG 2 cut(s) 318, 484
SpeI ACTAGT 1 cut(s) 889
SphI GCATGC 1 cut(s) 1017
Sse9I AATT 3 cut(s) 252, 302, 670
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 1 cut(s) 866
SspI AATATT 1 cut(s) 401
SspMI CTAG 5 cut(s) 408, 758, 890, 1127, 1177
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 494
TaqI TCGA 8 cut(s) 92, 126, 246, 319, 528, 613, 793, 1123
TasI AATT 3 cut(s) 252, 302, 670
TatI WGTACW 1 cut(s) 1050
TfiI GAWTC 5 cut(s) 461, 504, 533, 571, 761
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 3 cut(s) 297, 400, 543
TseFI GTSAC 2 cut(s) 238, 617
TseI GCWGC 6 cut(s) 163, 679, 700, 905, 970, 1017
Tsp45I GTSAC 2 cut(s) 238, 617
TspDTI ATGAA 7 cut(s) 389, 536, 626, 702, 1069, 1107, 1130
TspRI CASTG 3 cut(s) 297, 400, 543
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 2 cut(s) 252, 302
XceI RCATGY 1 cut(s) 1017
XhoI CTCGAG 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 122, 1137
XspI CTAG 5 cut(s) 408, 758, 890, 1127, 1177
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.