RchiOBHm_Chr3g0486561

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000154
Physical Location & Seq
Forward (+)
33417127 .. 33418257
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45106

Sequence Viewer

Length: 1023 bp
ATGGAGGTAACATTTTTAATTGTCAGCGTTTATGTTGATGATTTGATTTATACTGGTGATGATGAGCAAATGATGTTAGAGTTTAAGGTGTCCATGATGAAAGTTTTTTATATGACTGATCTGGGGAAAATGAGATTTTTCTTGGGAATAGAAGTGTTACAAACAGAAGATGGGATATATATGGGACAGAGAAAGTATGCTTTGGAAGTGTTGAAGCGCTTCGGAATGGAAGAGAGCAATGCAGTGTTGAACCCGATTGTGCCTGGAGTCAAAGTTGGGAAAGACAAGGCAGGAGTGAAGATTGATGAGACCTACTTCAAACAAATAGTAGGTAGTCTTATGTACATCACGGCTACTAGGCCTGATTTGATGTTTGTTGTGAGCCTAATCAGTAGATACATGGCAAGACCAACGCAGCTGCAGCTGCAAATTGCAAAAAGAGCCTTGAGATATTTGAAGGGGACAGTAGACTATGGCATCTGCTACAAGAAAGGAGGCAACAAGAAACTAGTTGGTTTCACTGACAGTGACTACGCAGGGGACTTAGAAGATAGAAAAAGCACATTTGGGTATGTTTTTATGTTGAGTGGAGGAGCAGTAGCATGGAGTTCAAAAAAACAGCCTATTGTTACGCTTTCTACAACCGAGGCTGAGTTTGTAGCAGCTGCAGCTTGTGCATGTCAAGCGGTATGGATGAGGAGGATTTTAGATAAGCTAAGTCATTCACAAGATTCTTGCACCACAGTAATGTGTGACAACTCCTCTACCATAAAGCTCTCAAAGAATCCGGTTATGCATGGACGCAGCAAGCATATAGATGTGCGCTTTCATTTTCTGAGAGATCTGACTCGGGATGGAGTTATTGAACTCGTGCACTGTGGAACCAGTGATCAAGCAGCAGACTTGTTGACAAACAAAGCCGCTCAAACTGGAGACTTTCCTGAGGCTTCGAGACCAGCTAGGAGTGTGCAAGTTGCCAGGAGTAAACTAACAGTAGTTAGTTTAAGGGAGGGAATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

340

Amino Acids

38.03

Weight (kDa)

8.95

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 6 - 87 1.4e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 923
AccI GTMKAC 1 cut(s) 468
AciI CCGC 2 cut(s) 686, 921
AfaI GTAC 1 cut(s) 344
AfeI AGCGCT 1 cut(s) 218
AgsI TTSAA 6 cut(s) 214, 250, 319, 457, 612, 866
AhlI ACTAGT 1 cut(s) 508
AjnI CCWGG 2 cut(s) 262, 977
AluBI AGCT 7 cut(s) 418, 424, 665, 671, 715, 775, 959
AluI AGCT 7 cut(s) 418, 424, 665, 671, 715, 775, 959
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 3 cut(s) 302, 927, 946
Alw44I GTGCAC 1 cut(s) 872
Ama87I CYCGRG 1 cut(s) 849
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 872
ApeKI GCWGC 9 cut(s) 415, 418, 421, 424, 662, 665, 668, 804, 896
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 2 cut(s) 219, 825
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 849
AxyI CCTNAGG 1 cut(s) 942
BaeGI GKGCMC 1 cut(s) 876
BauI CACGAG 1 cut(s) 869
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 9 cut(s) 405, 411, 427, 433, 652, 674, 680, 816, 908
BccI CCATC 2 cut(s) 164, 848
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 264, 979
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 302, 927, 946
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 3 cut(s) 357, 509, 960
BfmI CTRYAG 2 cut(s) 419, 666
BfoI RGCGCY 1 cut(s) 220
BglII AGATCT 1 cut(s) 841
Bme1390I CCNGG 2 cut(s) 264, 979
BmeT110I CYCGRG 1 cut(s) 849
BmiI GGNNCC 1 cut(s) 883
BmrFI CCNGG 2 cut(s) 264, 979
BmsI GCATC 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 285, 951
BpuEI CTTGAG 1 cut(s) 466
BsaI GGTCTC 2 cut(s) 302, 946
BsaJI CCNNGG 1 cut(s) 645
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 582, 612
Bse1I ACTGG 3 cut(s) 58, 885, 934
Bse21I CCTNAGG 1 cut(s) 942
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 264, 979
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 2 cut(s) 699, 859
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 3 cut(s) 642, 827, 933
BseNI ACTGG 3 cut(s) 58, 885, 934
BseRI GAGGAG 3 cut(s) 606, 712, 751
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 9 cut(s) 405, 411, 427, 433, 652, 674, 680, 816, 908
BshFI GGCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 1 cut(s) 788
BslFI GGGAC 3 cut(s) 198, 475, 554
BsmAI GTCTC 3 cut(s) 302, 927, 946
BsmFI GGGAC 3 cut(s) 198, 475, 554
BsnI GGCC 1 cut(s) 361
Bso31I GGTCTC 2 cut(s) 302, 946
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 1 cut(s) 876
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 3 cut(s) 118, 841, 889
BspACI CCGC 2 cut(s) 686, 921
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 3 cut(s) 643, 828, 934
BspLI GGNNCC 1 cut(s) 883
BspMAI CTGCAG 2 cut(s) 423, 670
BspTNI GGTCTC 2 cut(s) 302, 946
BsrBI CCGCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 3 cut(s) 58, 885, 934
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 3 cut(s) 118, 841, 889
BssSI CACGAG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 264, 979
Bst4CI ACNGT 5 cut(s) 466, 527, 745, 878, 994
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 809
BstDEI CTNAG 5 cut(s) 544, 651, 716, 836, 942
BstF5I GGATG 2 cut(s) 699, 859
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 2 cut(s) 219, 825
BstKTI GATC 3 cut(s) 121, 844, 892
BstMAI GTCTC 3 cut(s) 302, 927, 946
BstMBI GATC 3 cut(s) 118, 841, 889
BstMWI GCNNNNNNNGC 6 cut(s) 421, 424, 440, 668, 674, 683
BstNI CCWGG 2 cut(s) 264, 979
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 2 cut(s) 262, 977
BstSFI CTRYAG 2 cut(s) 419, 666
BstSLI GKGCMC 1 cut(s) 876
BstV1I GCAGC 9 cut(s) 405, 411, 427, 433, 652, 674, 680, 816, 908
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 699, 859
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 5 cut(s) 249, 519, 532, 874, 892
Cac8I GCNNGC 1 cut(s) 809
CfoI GCGC 2 cut(s) 219, 825
CseI GACGC 1 cut(s) 810
Csp6I GTAC 1 cut(s) 343
CviAII CATG 5 cut(s) 94, 400, 603, 678, 797
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 5 cut(s) 544, 651, 716, 836, 942
DpnI GATC 3 cut(s) 120, 843, 891
DpnII GATC 3 cut(s) 118, 841, 889
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 361
Eco31I GGTCTC 2 cut(s) 302, 946
Eco47III AGCGCT 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 849
EcoRII CCWGG 2 cut(s) 262, 977
EcoT22I ATGCAT 1 cut(s) 798
FaeI CATG 5 cut(s) 97, 403, 606, 681, 800
FaqI GGGAC 3 cut(s) 198, 475, 554
FatI CATG 5 cut(s) 93, 399, 602, 677, 796
FbaI TGATCA 1 cut(s) 889
FblI GTMKAC 1 cut(s) 468
FokI GGATG 2 cut(s) 706, 866
FspBI CTAG 3 cut(s) 357, 509, 960
GlaI GCGC 2 cut(s) 218, 824
GsuI CTGGAG 2 cut(s) 285, 951
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 361
HapII CCGG 1 cut(s) 788
HgaI GACGC 1 cut(s) 810
HhaI GCGC 2 cut(s) 219, 825
Hin1II CATG 5 cut(s) 97, 403, 606, 681, 800
Hin6I GCGC 2 cut(s) 217, 823
HinP1I GCGC 2 cut(s) 217, 823
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HinfI GANTC 4 cut(s) 267, 731, 784, 847
HpaII CCGG 1 cut(s) 788
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 4 cut(s) 469, 874, 909, 986
Hpy188I TCNGA 3 cut(s) 224, 837, 846
Hpy188III TCNNGA 3 cut(s) 851, 941, 951
Hpy8I GTNNAC 4 cut(s) 469, 874, 909, 986
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 5 cut(s) 466, 527, 745, 878, 994
HpyF10VI GCNNNNNNNGC 6 cut(s) 421, 424, 440, 668, 674, 683
HpyF3I CTNAG 5 cut(s) 544, 651, 716, 836, 942
Hsp92II CATG 5 cut(s) 97, 403, 606, 681, 800
HspAI GCGC 2 cut(s) 217, 823
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 3 cut(s) 118, 841, 889
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 9 cut(s) 405, 411, 427, 433, 652, 674, 680, 816, 908
LweI GCATC 1 cut(s) 486
MaeI CTAG 3 cut(s) 357, 509, 960
MaeIII GTNAC 5 cut(s) 7, 156, 527, 628, 752
MalI GATC 3 cut(s) 120, 843, 891
MbiI CCGCTC 1 cut(s) 923
MboI GATC 3 cut(s) 118, 841, 889
MboII GAAGA 4 cut(s) 179, 242, 310, 560
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 876
MluCI AATT 2 cut(s) 18, 429
MlyI GAGTC 2 cut(s) 276, 841
MnlI CCTC 8 cut(s) 488, 584, 640, 690, 693, 772, 937, 1003
Mph1103I ATGCAT 1 cut(s) 798
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 3 cut(s) 17, 84, 1004
MslI CAYNNNNRTG 2 cut(s) 746, 816
MspA1I CMGCKG 3 cut(s) 418, 424, 665
MspI CCGG 1 cut(s) 788
MspR9I CCNGG 2 cut(s) 264, 979
MvaI CCWGG 2 cut(s) 264, 979
MwoI GCNNNNNNNGC 6 cut(s) 421, 424, 440, 668, 674, 683
NdeII GATC 3 cut(s) 118, 841, 889
NlaIII CATG 5 cut(s) 97, 403, 606, 681, 800
NlaIV GGNNCC 1 cut(s) 883
NmuCI GTSAC 2 cut(s) 527, 752
NsiI ATGCAT 1 cut(s) 798
NspI RCATGY 1 cut(s) 681
PceI AGGCCT 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 731, 784
PleI GAGTC 2 cut(s) 275, 841
PpsI GAGTC 2 cut(s) 275, 841
Psp6I CCWGG 2 cut(s) 262, 977
PspGI CCWGG 2 cut(s) 262, 977
PspN4I GGNNCC 1 cut(s) 883
PstI CTGCAG 2 cut(s) 423, 670
PsuI RGATCY 1 cut(s) 841
PvuII CAGCTG 3 cut(s) 418, 424, 665
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 746, 816
SaqAI TTAA 3 cut(s) 17, 84, 1004
Sau3AI GATC 3 cut(s) 118, 841, 889
SchI GAGTC 2 cut(s) 276, 841
ScrFI CCNGG 2 cut(s) 264, 979
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 2 cut(s) 419, 666
SmiMI CAYNNNNRTG 2 cut(s) 746, 816
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 2 cut(s) 18, 429
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 2 cut(s) 686, 921
SspMI CTAG 3 cut(s) 357, 509, 960
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 262, 977
TaaI ACNGT 5 cut(s) 466, 527, 745, 878, 994
TaqI TCGA 1 cut(s) 950
TasI AATT 2 cut(s) 18, 429
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 2 cut(s) 731, 784
Tru1I TTAA 3 cut(s) 17, 84, 1004
Tru9I TTAA 3 cut(s) 17, 84, 1004
TscAI CASTG 5 cut(s) 249, 526, 532, 881, 892
TseFI GTSAC 2 cut(s) 527, 752
TseI GCWGC 9 cut(s) 415, 418, 421, 424, 662, 665, 668, 804, 896
Tsp45I GTSAC 2 cut(s) 527, 752
TspDTI ATGAA 2 cut(s) 113, 818
TspRI CASTG 5 cut(s) 249, 526, 532, 881, 892
VneI GTGCAC 1 cut(s) 872
XceI RCATGY 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 3 cut(s) 357, 509, 960
Zsp2I ATGCAT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.