Rw4G000680

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000154
Physical Location & Seq
Reverse (-)
1317806 .. 1318237
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000680.1

Sequence Viewer

Length: 432 bp
ATGGAGAAGAGCAACTCATCTAGGAACCCTATTGTCCCTGGATTCAAGTTGATGAAAGATGAAAGTGGTGTGAAGGTGGACGCCACTATGTATAAGCAGGTTGTTGGCTGTTTGATGTACTTGACAGCTACTAGGCCATATCTCATGTATGTGATAAGTGTAATCAGCAGGTTTATGGGAAGTCCGACTGAGCTACACATGCAAGCAGTTAAAAGAGTCCTCAGGTATCTCAAAGGCACTGTTGATTTGGGGATTCTGTACAAACGAAATGGGAATGAAAAGCTTGAGGCATACACGGATAGTGACTATGCAGGTGATCTAGATGACCGGAGGAGCACATCCAGATACGTGTTTCTGCTTAGCACTAGTGCAGTTTCATGGTCTTCTAAGAAGCAACCTGTAGTTACCTTACCACCGAAGCTGAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

143

Amino Acids

16.14

Weight (kDa)

9.62

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 302
Acc36I ACCTGC 3 cut(s) 88, 159, 302
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 119, 260
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 46
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 128, 193, 283, 421
AluI AGCT 4 cut(s) 128, 193, 283, 421
Alw21I GWGCWC 1 cut(s) 338
AoxI GGCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 4 cut(s) 21, 132, 320, 366
BfmI CTRYAG 1 cut(s) 399
BfuAI ACCTGC 3 cut(s) 88, 159, 302
BlpI GCTNAGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 327
Bse21I CCTNAGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 338
BseMII CTCAG 3 cut(s) 180, 235, 413
BseRI GAGGAG 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 3 cut(s) 181, 234, 414
BspLI GGNNCC 1 cut(s) 26
BspMI ACCTGC 3 cut(s) 88, 159, 302
BspQI GCTCTTC 1 cut(s) 2
BsrGI TGTACA 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 5 cut(s) 189, 221, 359, 387, 422
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 3 cut(s) 88, 159, 302
Cac8I GCNNGC 1 cut(s) 204
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 118, 259
CviAII CATG 3 cut(s) 145, 199, 378
CviJI RGCY 6 cut(s) 108, 128, 136, 193, 283, 421
CviKI_1 RGCY 6 cut(s) 108, 128, 136, 193, 283, 421
CviQI GTAC 2 cut(s) 118, 259
DdeI CTNAG 5 cut(s) 189, 221, 359, 387, 422
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco81I CCTNAGG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 148, 202, 381
FaqI GGGAC 1 cut(s) 20
FatI CATG 3 cut(s) 144, 198, 377
FokI GGATG 1 cut(s) 325
FspBI CTAG 4 cut(s) 21, 132, 320, 366
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 328
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 148, 202, 381
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 42, 216, 253
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 320, 342
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 202, 311, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 5 cut(s) 189, 221, 359, 387, 422
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 148, 202, 381
Kzo9I GATC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 9 cut(s) 24, 51, 83, 154, 208, 297, 341, 355, 411
MaeI CTAG 4 cut(s) 21, 132, 320, 366
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 302, 403
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 19, 375
MhlI GDGCHC 1 cut(s) 338
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 230, 280, 324
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 1 cut(s) 316
NlaIII CATG 3 cut(s) 148, 202, 381
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 2 cut(s) 42, 253
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 26
RsaI GTAC 2 cut(s) 119, 260
RsaNI GTAC 2 cut(s) 118, 259
RseI CAYNNNNRTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 365
SspMI CTAG 4 cut(s) 21, 132, 320, 366
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 351
TatI WGTACW 2 cut(s) 117, 258
TfiI GAWTC 2 cut(s) 42, 253
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 68, 75, 291, 366
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 1 cut(s) 202
XspI CTAG 4 cut(s) 21, 132, 320, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.