Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 100 - 279 | 2.9e-30 | gag-polypeptide of LTR copia-type |
| zf-CCHC | PF00098 | 376 - 391 | 7e-06 | Zinc knuckle |
| Pol_BBD | PF22936 | 427 - 506 | 1.9e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 537 - 588 | 5.8e-10 | GAG-pre-integrase domain |
| RVT_2 | PF07727 | 695 - 939 | 4.2e-85 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2461 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2698 |
| AccI | GTMKAC | 3 cut(s) | 1846, 2103, 2606 |
| AccIII | TCCGGA | 1 cut(s) | 3579 |
| AciI | CCGC | 6 cut(s) | 203, 464, 3766, 3872, 3886, 4062 |
| AclWI | GGATC | 4 cut(s) | 480, 531, 3103, 3736 |
| AcsI | RAATTY | 6 cut(s) | 593, 938, 955, 1024, 1426, 2161 |
| AcuI | CTGAAG | 7 cut(s) | 560, 1020, 1278, 2409, 3222, 3246, 3722 |
| AcyI | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| AdeI | CACNNNGTG | 1 cut(s) | 777 |
| AfaI | GTAC | 8 cut(s) | 83, 1365, 1672, 2178, 2900, 3361, 3658, 4104 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 199, 463, 1680, 2698, 3751 |
| AflII | CTTAAG | 1 cut(s) | 2524 |
| AflIII | ACRYGT | 1 cut(s) | 3726 |
| AhlI | ACTAGT | 1 cut(s) | 2197 |
| AjnI | CCWGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| Alw21I | GWGCWC | 1 cut(s) | 1085 |
| AlwI | GGATC | 4 cut(s) | 480, 531, 3103, 3736 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2310, 3779 |
| Aor13HI | TCCGGA | 1 cut(s) | 3579 |
| AoxI | GGCC | 4 cut(s) | 3, 178, 2469, 4089 |
| ApoI | RAATTY | 6 cut(s) | 593, 938, 955, 1024, 1426, 2161 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2480, 2512 |
| AseI | ATTAAT | 3 cut(s) | 663, 2403, 4121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1405 |
| AspA2I | CCTAGG | 1 cut(s) | 2465 |
| AspLEI | GCGC | 1 cut(s) | 2464 |
| AspS9I | GGNCC | 4 cut(s) | 86, 178, 1559, 2469 |
| AvaII | GGWCC | 2 cut(s) | 86, 1559 |
| AvrII | CCTAGG | 1 cut(s) | 2465 |
| AxyI | CCTNAGG | 1 cut(s) | 3121 |
| BanI | GGYRCC | 1 cut(s) | 2461 |
| BanII | GRGCYC | 1 cut(s) | 3677 |
| BauI | CACGAG | 1 cut(s) | 3807 |
| BbsI | GAAGAC | 5 cut(s) | 405, 1745, 2421, 2675, 3111 |
| Bbv12I | GWGCWC | 1 cut(s) | 1085 |
| BceAI | ACGGC | 1 cut(s) | 87 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 127, 161 |
| BciT130I | CCWGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| BclI | TGATCA | 4 cut(s) | 553, 1636, 1936, 2380 |
| BcuI | ACTAGT | 1 cut(s) | 2197 |
| BfmI | CTRYAG | 2 cut(s) | 789, 3404 |
| BfoI | RGCGCY | 1 cut(s) | 2465 |
| BfrI | CTTAAG | 1 cut(s) | 2524 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 515 |
| BglII | AGATCT | 2 cut(s) | 563, 4054 |
| BlnI | CCTAGG | 1 cut(s) | 2465 |
| Bme1390I | CCNGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| Bme18I | GGWCC | 2 cut(s) | 86, 1559 |
| BmgT120I | GGNCC | 4 cut(s) | 86, 178, 1559, 2469 |
| BmiI | GGNNCC | 6 cut(s) | 40, 67, 88, 2004, 2463, 3876 |
| BmrFI | CCNGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| BmsI | GCATC | 8 cut(s) | 424, 887, 1452, 2739, 3388, 3859, 3988, 4060 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2679 |
| BpiI | GAAGAC | 5 cut(s) | 405, 1745, 2421, 2675, 3111 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3557, 3589 |
| BpmI | CTGGAG | 3 cut(s) | 301, 2238, 3975 |
| BpuEI | CTTGAG | 3 cut(s) | 803, 1703, 3581 |
| Bsa29I | ATCGAT | 2 cut(s) | 3372, 3420 |
| BsaBI | GATNNNNATC | 1 cut(s) | 347 |
| BsaHI | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| BsaI | GGTCTC | 1 cut(s) | 472 |
| BsaJI | CCNNGG | 5 cut(s) | 69, 106, 485, 2465, 3561 |
| BsaWI | WCCGGW | 2 cut(s) | 260, 3579 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2236, 2266, 3535, 3565, 3678, 3708, 3948, 3978 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 199, 463, 1680, 2698, 3751 |
| Bse1I | ACTGG | 8 cut(s) | 1283, 1318, 1360, 1381, 1946, 2255, 2614, 3344 |
| Bse21I | CCTNAGG | 1 cut(s) | 3121 |
| Bse3DI | GCAATG | 2 cut(s) | 2959, 3713 |
| Bse8I | GATNNNNATC | 1 cut(s) | 347 |
| BseAI | TCCGGA | 1 cut(s) | 3579 |
| BseBI | CCWGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| BseCI | ATCGAT | 2 cut(s) | 3372, 3420 |
| BseDI | CCNNGG | 5 cut(s) | 69, 106, 485, 2465, 3561 |
| BseGI | GGATG | 6 cut(s) | 115, 1342, 2173, 2599, 2638, 3796 |
| BseJI | GATNNNNATC | 1 cut(s) | 347 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 199, 463, 1680, 2698, 3751 |
| BseMI | GCAATG | 2 cut(s) | 2959, 3713 |
| BseMII | CTCAG | 6 cut(s) | 228, 366, 399, 900, 3016, 3135 |
| BseNI | ACTGG | 8 cut(s) | 1283, 1318, 1360, 1381, 1946, 2255, 2614, 3344 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BsgI | GTGCAG | 6 cut(s) | 1002, 2010, 2237, 2283, 2874, 4071 |
| BshFI | GGCC | 4 cut(s) | 5, 180, 2471, 4091 |
| BshNI | GGYRCC | 1 cut(s) | 2461 |
| BshVI | ATCGAT | 2 cut(s) | 3372, 3420 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1085 |
| BsiSI | CCGG | 2 cut(s) | 261, 3580 |
| BslFI | GGGAC | 4 cut(s) | 1509, 2998, 3031, 3737 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 199, 463, 1680, 2698, 3751 |
| BsmFI | GGGAC | 4 cut(s) | 1509, 2998, 3031, 3737 |
| BsmI | GAATGC | 4 cut(s) | 161, 466, 615, 1172 |
| BsnI | GGCC | 4 cut(s) | 5, 180, 2471, 4091 |
| Bso31I | GGTCTC | 1 cut(s) | 472 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1085, 3677 |
| Bsp13I | TCCGGA | 1 cut(s) | 3579 |
| BspACI | CCGC | 6 cut(s) | 203, 464, 3766, 3872, 3886, 4062 |
| BspANI | GGCC | 4 cut(s) | 5, 180, 2471, 4091 |
| BspCNI | CTCAG | 6 cut(s) | 229, 365, 398, 899, 3015, 3134 |
| BspDI | ATCGAT | 2 cut(s) | 3372, 3420 |
| BspEI | TCCGGA | 1 cut(s) | 3579 |
| BspHI | TCATGA | 1 cut(s) | 1044 |
| BspLI | GGNNCC | 6 cut(s) | 40, 67, 88, 2004, 2463, 3876 |
| BspMAI | CTGCAG | 1 cut(s) | 3408 |
| BspPI | GGATC | 4 cut(s) | 480, 531, 3103, 3736 |
| BspQI | GCTCTTC | 2 cut(s) | 3963, 3979 |
| BspT107I | GGYRCC | 1 cut(s) | 2461 |
| BspTI | CTTAAG | 1 cut(s) | 2524 |
| BspTNI | GGTCTC | 1 cut(s) | 472 |
| BsrDI | GCAATG | 2 cut(s) | 2959, 3713 |
| BsrI | ACTGG | 8 cut(s) | 1283, 1318, 1360, 1381, 1946, 2255, 2614, 3344 |
| BssECI | CCNNGG | 5 cut(s) | 69, 106, 485, 2465, 3561 |
| BssNAI | GTATAC | 2 cut(s) | 1847, 2607 |
| BssNI | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| BssSI | CACGAG | 1 cut(s) | 3807 |
| BssT1I | CCWWGG | 3 cut(s) | 106, 2465, 3561 |
| Bst1107I | GTATAC | 2 cut(s) | 1847, 2607 |
| Bst2BI | CACGAG | 1 cut(s) | 3807 |
| Bst2UI | CCWGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| Bst6I | CTCTTC | 7 cut(s) | 583, 815, 1531, 2764, 2859, 3963, 3979 |
| BstACI | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| BstAFI | CTTAAG | 1 cut(s) | 2524 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1202, 2297 |
| BstC8I | GCNNGC | 2 cut(s) | 1177, 4132 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstEII | GGTNACC | 1 cut(s) | 17 |
| BstF5I | GGATG | 6 cut(s) | 115, 1342, 2173, 2599, 2638, 3796 |
| BstH2I | RGCGCY | 1 cut(s) | 2465 |
| BstHHI | GCGC | 1 cut(s) | 2464 |
| BstNI | CCWGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| BstNSI | RCATGY | 4 cut(s) | 2629, 3730, 3856, 4134 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2679 |
| BstPI | GGTNACC | 1 cut(s) | 17 |
| BstSCI | CCNGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| BstSFI | CTRYAG | 2 cut(s) | 789, 3404 |
| BstV2I | GAAGAC | 5 cut(s) | 405, 1745, 2421, 2675, 3111 |
| BstX2I | RGATCY | 3 cut(s) | 523, 563, 4054 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 175, 1313, 1953, 2590, 4099 |
| BstYI | RGATCY | 3 cut(s) | 523, 563, 4054 |
| BstZ17I | GTATAC | 2 cut(s) | 1847, 2607 |
| Bsu15I | ATCGAT | 2 cut(s) | 3372, 3420 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3121 |
| BsuRI | GGCC | 4 cut(s) | 5, 180, 2471, 4091 |
| BsuTUI | ATCGAT | 2 cut(s) | 3372, 3420 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtsCI | GGATG | 6 cut(s) | 115, 1342, 2173, 2599, 2638, 3796 |
| BtsI | GCAGTG | 4 cut(s) | 145, 2854, 3195, 3311 |
| Cac8I | GCNNGC | 2 cut(s) | 1177, 4132 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2310, 3779 |
| CciI | TCATGA | 1 cut(s) | 1044 |
| CfoI | GCGC | 1 cut(s) | 2464 |
| Cfr13I | GGNCC | 4 cut(s) | 86, 178, 1559, 2469 |
| ClaI | ATCGAT | 2 cut(s) | 3372, 3420 |
| CseI | GACGC | 2 cut(s) | 100, 3953 |
| CsiI | ACCWGGT | 1 cut(s) | 1465 |
| Csp6I | GTAC | 8 cut(s) | 82, 1364, 1671, 2177, 2899, 3360, 3657, 4103 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3227, 3262 |
| CviQI | GTAC | 8 cut(s) | 82, 1364, 1671, 2177, 2899, 3360, 3657, 4103 |
| DinI | GGCGCC | 1 cut(s) | 2463 |
| DraIII | CACNNNGTG | 1 cut(s) | 777 |
| Eam1104I | CTCTTC | 7 cut(s) | 583, 815, 1531, 2764, 2859, 3963, 3979 |
| EarI | CTCTTC | 7 cut(s) | 583, 815, 1531, 2764, 2859, 3963, 3979 |
| Eco130I | CCWWGG | 3 cut(s) | 106, 2465, 3561 |
| Eco24I | GRGCYC | 1 cut(s) | 3677 |
| Eco31I | GGTCTC | 1 cut(s) | 472 |
| Eco32I | GATATC | 2 cut(s) | 1972, 3383 |
| Eco47I | GGWCC | 2 cut(s) | 86, 1559 |
| Eco57I | CTGAAG | 7 cut(s) | 560, 1020, 1278, 2409, 3222, 3246, 3722 |
| Eco81I | CCTNAGG | 1 cut(s) | 3121 |
| Eco91I | GGTNACC | 1 cut(s) | 17 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2469 |
| EcoO65I | GGTNACC | 1 cut(s) | 17 |
| EcoRI | GAATTC | 1 cut(s) | 955 |
| EcoRII | CCWGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| EcoRV | GATATC | 2 cut(s) | 1972, 3383 |
| EcoT14I | CCWWGG | 3 cut(s) | 106, 2465, 3561 |
| EcoT22I | ATGCAT | 2 cut(s) | 1445, 2961 |
| EcoT38I | GRGCYC | 1 cut(s) | 3677 |
| EgeI | GGCGCC | 1 cut(s) | 2463 |
| EheI | GGCGCC | 1 cut(s) | 2463 |
| ErhI | CCWWGG | 3 cut(s) | 106, 2465, 3561 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 724, 756, 1079, 1111 |
| FaqI | GGGAC | 4 cut(s) | 1509, 2998, 3031, 3737 |
| FbaI | TGATCA | 4 cut(s) | 553, 1636, 1936, 2380 |
| FblI | GTMKAC | 3 cut(s) | 1846, 2103, 2606 |
| FokI | GGATG | 6 cut(s) | 102, 1349, 2180, 2606, 2645, 3803 |
| FriOI | GRGCYC | 1 cut(s) | 3677 |
| GlaI | GCGC | 1 cut(s) | 2463 |
| GsuI | CTGGAG | 3 cut(s) | 301, 2238, 3975 |
| HaeII | RGCGCY | 1 cut(s) | 2465 |
| HaeIII | GGCC | 4 cut(s) | 5, 180, 2471, 4091 |
| HapII | CCGG | 2 cut(s) | 261, 3580 |
| HgaI | GACGC | 2 cut(s) | 100, 3953 |
| HhaI | GCGC | 1 cut(s) | 2464 |
| Hin1I | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| Hin6I | GCGC | 1 cut(s) | 2462 |
| HinP1I | GCGC | 1 cut(s) | 2462 |
| HindIII | AAGCTT | 7 cut(s) | 2037, 2521, 2879, 3471, 3509, 3532, 4096 |
| HpaII | CCGG | 2 cut(s) | 261, 3580 |
| Hpy166II | GTNNAC | 7 cut(s) | 737, 1409, 1847, 2104, 2425, 2607, 3905 |
| Hpy8I | GTNNAC | 7 cut(s) | 737, 1409, 1847, 2104, 2425, 2607, 3905 |
| Hpy99I | CGWCG | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 1 cut(s) | 3738 |
| HpySE526I | ACGT | 1 cut(s) | 3738 |
| Hsp92I | GRCGYC | 3 cut(s) | 111, 2462, 3945 |
| HspAI | GCGC | 1 cut(s) | 2462 |
| KasI | GGCGCC | 1 cut(s) | 2461 |
| Kpn2I | TCCGGA | 1 cut(s) | 3579 |
| Ksp22I | TGATCA | 4 cut(s) | 553, 1636, 1936, 2380 |
| LguI | GCTCTTC | 2 cut(s) | 3963, 3979 |
| LmnI | GCTCC | 4 cut(s) | 44, 65, 2002, 2257 |
| LweI | GCATC | 8 cut(s) | 424, 887, 1452, 2739, 3388, 3859, 3988, 4060 |
| MabI | ACCWGGT | 1 cut(s) | 1465 |
| MaeII | ACGT | 1 cut(s) | 3738 |
| MfeI | CAATTG | 1 cut(s) | 3099 |
| MflI | RGATCY | 3 cut(s) | 523, 563, 4054 |
| MhlI | GDGCHC | 2 cut(s) | 1085, 3677 |
| Mly113I | GGCGCC | 1 cut(s) | 2462 |
| MlyI | GAGTC | 4 cut(s) | 832, 986, 2223, 3842 |
| MmeI | TCCRAC | 3 cut(s) | 1018, 2748, 3873 |
| Mph1103I | ATGCAT | 2 cut(s) | 1445, 2961 |
| MroI | TCCGGA | 1 cut(s) | 3579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1405 |
| MslI | CAYNNNNRTG | 3 cut(s) | 549, 2588, 4135 |
| MspCI | CTTAAG | 1 cut(s) | 2524 |
| MspI | CCGG | 2 cut(s) | 261, 3580 |
| MspR9I | CCNGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| MunI | CAATTG | 1 cut(s) | 3099 |
| Mva1269I | GAATGC | 4 cut(s) | 161, 466, 615, 1172 |
| MvaI | CCWGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| NarI | GGCGCC | 1 cut(s) | 2462 |
| NlaIV | GGNNCC | 6 cut(s) | 40, 67, 88, 2004, 2463, 3876 |
| NmuCI | GTSAC | 9 cut(s) | 17, 295, 1219, 1351, 1855, 3077, 3308, 3556, 3619 |
| NsiI | ATGCAT | 2 cut(s) | 1445, 2961 |
| NspI | RCATGY | 4 cut(s) | 2629, 3730, 3856, 4134 |
| PacI | TTAATTAA | 1 cut(s) | 663 |
| PaeI | GCATGC | 1 cut(s) | 4134 |
| PagI | TCATGA | 1 cut(s) | 1044 |
| PciI | ACATGT | 1 cut(s) | 3726 |
| PciSI | GCTCTTC | 2 cut(s) | 3963, 3979 |
| PctI | GAATGC | 4 cut(s) | 161, 466, 615, 1172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1405 |
| PfeI | GAWTC | 9 cut(s) | 285, 503, 580, 623, 686, 746, 1041, 2723, 3340 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2698 |
| PleI | GAGTC | 4 cut(s) | 831, 985, 2223, 3841 |
| PluTI | GGCGCC | 1 cut(s) | 2465 |
| PpsI | GAGTC | 4 cut(s) | 831, 985, 2223, 3841 |
| PscI | ACATGT | 1 cut(s) | 3726 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2679 |
| PshBI | ATTAAT | 3 cut(s) | 663, 2403, 4121 |
| Psp6I | CCWGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| PspEI | GGTNACC | 1 cut(s) | 17 |
| PspGI | CCWGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| PspN4I | GGNNCC | 6 cut(s) | 40, 67, 88, 2004, 2463, 3876 |
| PspPI | GGNCC | 4 cut(s) | 86, 178, 1559, 2469 |
| PstI | CTGCAG | 1 cut(s) | 3408 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2310, 3779 |
| PsuI | RGATCY | 3 cut(s) | 523, 563, 4054 |
| RsaI | GTAC | 8 cut(s) | 83, 1365, 1672, 2178, 2900, 3361, 3658, 4104 |
| RsaNI | GTAC | 8 cut(s) | 82, 1364, 1671, 2177, 2899, 3360, 3657, 4103 |
| RseI | CAYNNNNRTG | 3 cut(s) | 549, 2588, 4135 |
| SapI | GCTCTTC | 2 cut(s) | 3963, 3979 |
| Sau96I | GGNCC | 4 cut(s) | 86, 178, 1559, 2469 |
| SchI | GAGTC | 4 cut(s) | 832, 986, 2223, 3842 |
| ScrFI | CCNGG | 4 cut(s) | 1467, 1675, 2226, 2473 |
| SduI | GDGCHC | 2 cut(s) | 1085, 3677 |
| SexAI | ACCWGGT | 1 cut(s) | 1465 |
| SfaNI | GCATC | 8 cut(s) | 424, 887, 1452, 2739, 3388, 3859, 3988, 4060 |
| SfcI | CTRYAG | 2 cut(s) | 789, 3404 |
| SfoI | GGCGCC | 1 cut(s) | 2463 |
| SinI | GGWCC | 2 cut(s) | 86, 1559 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 549, 2588, 4135 |
| SmlI | CTYRAG | 4 cut(s) | 782, 1718, 2524, 3596 |
| SmoI | CTYRAG | 4 cut(s) | 782, 1718, 2524, 3596 |
| SpeI | ACTAGT | 1 cut(s) | 2197 |
| SphI | GCATGC | 1 cut(s) | 4134 |
| SsiI | CCGC | 6 cut(s) | 203, 464, 3766, 3872, 3886, 4062 |
| SspDI | GGCGCC | 1 cut(s) | 2461 |
| SspI | AATATT | 2 cut(s) | 480, 2358 |
| StyD4I | CCNGG | 4 cut(s) | 1465, 1673, 2224, 2471 |
| StyI | CCWWGG | 3 cut(s) | 106, 2465, 3561 |
| TaiI | ACGT | 1 cut(s) | 3741 |
| TaqI | TCGA | 6 cut(s) | 1108, 2232, 3372, 3420, 3607, 3677 |
| TatI | WGTACW | 2 cut(s) | 1363, 3656 |
| TauI | GCSGC | 1 cut(s) | 206 |
| TfiI | GAWTC | 9 cut(s) | 285, 503, 580, 623, 686, 746, 1041, 2723, 3340 |
| TseFI | GTSAC | 9 cut(s) | 17, 295, 1219, 1351, 1855, 3077, 3308, 3556, 3619 |
| Tsp45I | GTSAC | 9 cut(s) | 17, 295, 1219, 1351, 1855, 3077, 3308, 3556, 3619 |
| TspGWI | ACGGA | 3 cut(s) | 99, 108, 3867 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2698 |
| Vha464I | CTTAAG | 1 cut(s) | 2524 |
| VpaK11BI | GGWCC | 2 cut(s) | 86, 1559 |
| VspI | ATTAAT | 3 cut(s) | 663, 2403, 4121 |
| XapI | RAATTY | 6 cut(s) | 593, 938, 955, 1024, 1426, 2161 |
| XceI | RCATGY | 4 cut(s) | 2629, 3730, 3856, 4134 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1381, 2161 |
| XmaJI | CCTAGG | 1 cut(s) | 2465 |
| XmiI | GTMKAC | 3 cut(s) | 1846, 2103, 2606 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1405 |
| Zsp2I | ATGCAT | 2 cut(s) | 1445, 2961 |