FvH4_4g30902

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000154
Physical Location & Seq
Reverse (-)
30298792 .. 30300570
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30902.t1

Sequence Viewer

Length: 1779 bp
ATGGCAGAAGCAAGCTCAACGCAGCTGAAGCTTTTGGCTGAGAGCAACTCAGCTCCAGTATCCATCCCTCTATTTGATGGATACTACGATCACTGGTCAGAGCTCATGGAGAATTTCATTCGCTCCAGAAAGTTGTGGCACCTCATTGAAACTGGTGTTCCAACTCCTGTGCAAGTGCGTGAACAGGTCGCTACTTTCTCAACTGTTGTGGCAGAAGGAAGACAACAGACTGAAGCGCAAAGGAAGAGAGAAGAAGACTTGCGCCAAAGAGTTGAGCAAATGAAGGAGGATGATCTGAAGGTTAAGAATTTCCTTTTTCAAGCTATTCATAGGACTATCATGGACACAATTCTTGATAGGTCCTCTTCGAAGAGCATATGGGATTCCATGAAACAAAAATATCATGGTTCATCCAAGGTGAAGAGAGCTAGCAGGCAGGCACTGAAGAAAGACTTCGAGATCTTGCAGATGAAGGAGGATGAGAGGATTGATGAGTTCTTTGCTCGGACTCTCACCATTGTGAACAAGCTGAAAGTTCATGGTGGTCAGAATATGTCACAGGTTGACATAGTAGAGAAAATTTTGAGGTCATTGACTCCGAGATTTGACTATGTAGCATGTTCAATCGAGGAATCCAATGACCTTGATACAATGACGGTTGACGAGTTGCACAGCAGTTTGCTTGTCCATGAGCAGAGATTGTGTAGAATCAATGGAGGAATGAGAGATGATCAAGCTCTCAAAGTAACATCAAGTGAAGGAGGTAATCGAGGTAGAGGCAATAGGGGTCGGGGACGAGGAGGCAACATGGGAAGAGGTCGAGGAAGAGGCATTTTTAACAAGGCCATGGTAGAATGTTACAAATGTCACAAGCTTGGACATTTTCAGTATGAATGTCCAACTTGGAACAAGGAGATAAATTATGCAGAGGCAGAGTTCAATGAGCATGAAGAAATACTACTAATGGCTTATGTCGATTTGAATGAAGGAAAAAGGGAAGATGTGTGGTTCCTAGACTCAGGGTGCTCAAATCATATGAGCGGTGATTTGTCAAAGTTCTGTGATTTGGATGAACGAGTTCGGCATCATGTCAAACTTGGCAACAACTACAAGATGATGGTGCAAGGAAGAGGTAGAGTCAAGATTGCCATTCATGGTGTCACCTACAGCTTTTCAGATGTGTTTTATGTGCCAGGGTTGACTAACAATCTCCTTAGTATTGGTCAACTACAAGAAAGAGGGCTTGCTGTTTTGATGCATGAAGGGAAGTGCAGAGTATACCATCCTGAGAGAGGTCTCATCATTCAGACAACTATGACAACCAACCGAATGTTTGTGATTGTTGCCAATACACAAGAAGAGAAGTGCTTTCACTCCAGTGTGCAAAAGCAGGATCTAGCCAATCTGTGGCACTGCCGGTTTGCACATCTAAGTCACAAAGGATTGAAGCTGCTACAGGAGAAAGAGATGGTTAGTGGATTGCTGAAACTTACTTCTTCATCATCAGTATGTGTGAGCTGCCTTGTCGGGAAGCAGCACAGAGATCCCATACCAAAGAAAAGCACGTGGAGGGCTACACACAAGCTTCAACTTGTTCATGCTGATCTGTGTGGACCGATAACTCCAGAATCAAACAGCAAGAAGAGGTATGTCCTATGCTTTATTGATGACTTTAGTAGAAAAGCATGGACAGTTTTTCTTGTTGAGAAATCAGAAACTTTTAGCTACTTTAAAAGTTTTAAGAGCATGGTAGAGAAGGAATCTGGTATGAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

593

Amino Acids

67.97

Weight (kDa)

8.87

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 73 - 233 8.1e-26 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 336 - 414 5.3e-24 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 452 - 512 1.5e-12 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 1407
AccBSI CCGCTC 1 cut(s) 1041
AccI GTMKAC 1 cut(s) 1278
AciI CCGC 1 cut(s) 1041
AclWI GGATC 2 cut(s) 1401, 1538
AcsI RAATTY 3 cut(s) 112, 307, 579
AcuI CTGAAG 4 cut(s) 47, 252, 317, 464
AcvI CACGTG 1 cut(s) 1566
AfiI CCNNNNNNNGG 2 cut(s) 1292, 1407
AgsI TTSAA 7 cut(s) 149, 320, 624, 940, 982, 1447, 1589
AjnI CCWGG 1 cut(s) 1192
AleI CACNNNNGTG 2 cut(s) 518, 1377
Alw21I GWGCWC 2 cut(s) 105, 1028
Alw26I GTCTC 1 cut(s) 1301
AlwI GGATC 2 cut(s) 1401, 1538
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 1 cut(s) 843
ApeKI GCWGC 4 cut(s) 22, 1450, 1518, 1534
ApoI RAATTY 3 cut(s) 112, 307, 579
Asp700I GAANNNNTTC 2 cut(s) 452, 1077
AspLEI GCGC 2 cut(s) 238, 264
AspS9I GGNCC 2 cut(s) 360, 1613
AsuHPI GGTGA 4 cut(s) 430, 505, 1055, 1153
AsuII TTCGAA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 428
AvaII GGWCC 2 cut(s) 360, 1613
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 105
BarI GAAGNNNNNNTAC 2 cut(s) 942, 974
BbrPI CACGTG 1 cut(s) 1566
BbsI GAAGAC 2 cut(s) 226, 261
Bbv12I GWGCWC 2 cut(s) 105, 1028
BbvI GCAGC 4 cut(s) 34, 1437, 1505, 1546
BccI CCATC 5 cut(s) 71, 71, 1111, 1290, 1462
BciT130I CCWGG 1 cut(s) 1194
BciVI GTATCC 2 cut(s) 70, 74
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 1 cut(s) 1301
BfaI CTAG 3 cut(s) 429, 1013, 1397
BfmI CTRYAG 2 cut(s) 1165, 1454
BfuI GTATCC 2 cut(s) 70, 74
BglII AGATCT 1 cut(s) 459
BisI GCNGC 4 cut(s) 23, 1451, 1519, 1535
BlsI GCNGC 4 cut(s) 24, 1452, 1520, 1536
Bme1390I CCNGG 1 cut(s) 1194
Bme18I GGWCC 2 cut(s) 360, 1613
BmgT120I GGNCC 2 cut(s) 360, 1613
BmiI GGNNCC 2 cut(s) 140, 1010
BmrFI CCNGG 1 cut(s) 1194
BmsI GCATC 2 cut(s) 1093, 1245
BmtI GCTAGC 1 cut(s) 432
BpiI GAAGAC 2 cut(s) 226, 261
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 4 cut(s) 39, 109, 1360, 1608
Bpu14I TTCGAA 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 1566
BsaI GGTCTC 1 cut(s) 1301
BsaJI CCNNGG 3 cut(s) 414, 846, 1193
Bsc4I CCNNNNNNNGG 2 cut(s) 1292, 1407
Bse118I RCCGGY 1 cut(s) 1416
Bse1I ACTGG 4 cut(s) 56, 98, 157, 1377
BseBI CCWGG 1 cut(s) 1194
BseDI CCNNGG 3 cut(s) 414, 846, 1193
BseGI GGATG 6 cut(s) 63, 295, 410, 484, 1075, 1282
BseLI CCNNNNNNNGG 2 cut(s) 1292, 1407
BseMII CTCAG 4 cut(s) 30, 63, 1032, 1278
BseNI ACTGG 4 cut(s) 56, 98, 157, 1377
BseRI GAGGAG 1 cut(s) 813
BseXI GCAGC 4 cut(s) 34, 1437, 1505, 1546
BsgI GTGCAG 1 cut(s) 1291
BshFI GGCC 1 cut(s) 845
BshNI GGYRCC 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 105, 1028
BsiSI CCGG 1 cut(s) 1417
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 2 cut(s) 1292, 1407
BsmAI GTCTC 1 cut(s) 1301
BsmFI GGGAC 1 cut(s) 807
BsnI GGCC 1 cut(s) 845
Bso31I GGTCTC 1 cut(s) 1301
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 105, 1028
Bsp143I GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 1 cut(s) 1041
BspANI GGCC 1 cut(s) 845
BspCNI CTCAG 4 cut(s) 31, 62, 1031, 1279
BspLI GGNNCC 2 cut(s) 140, 1010
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 1401, 1538
BspQI GCTCTTC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 1301
BsrBI CCGCTC 1 cut(s) 1041
BsrFI RCCGGY 1 cut(s) 1416
BsrI ACTGG 4 cut(s) 56, 98, 157, 1377
BssAI RCCGGY 1 cut(s) 1416
BssECI CCNNGG 3 cut(s) 414, 846, 1193
BssMI GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
BssNAI GTATAC 1 cut(s) 1279
BssT1I CCWWGG 2 cut(s) 414, 846
Bst1107I GTATAC 1 cut(s) 1279
Bst2UI CCWGG 1 cut(s) 1194
Bst4CI ACNGT 3 cut(s) 205, 658, 1693
Bst6I CTCTTC 9 cut(s) 239, 365, 370, 416, 808, 820, 1123, 1353, 1637
BstBAI YACGTR 1 cut(s) 1566
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 5 cut(s) 13, 430, 434, 438, 1245
BstDEI CTNAG 6 cut(s) 39, 49, 1018, 1214, 1287, 1430
BstDSI CCRYGG 1 cut(s) 846
BstENI CCTNNNNNAGG 1 cut(s) 1290
BstF5I GGATG 6 cut(s) 63, 295, 410, 484, 1075, 1282
BstHHI GCGC 2 cut(s) 238, 264
BstKTI GATC 7 cut(s) 91, 295, 462, 733, 1396, 1546, 1606
BstMAI GTCTC 1 cut(s) 1301
BstMBI GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 1194
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 1192
BstSFI CTRYAG 2 cut(s) 1165, 1454
BstV1I GCAGC 4 cut(s) 34, 1437, 1505, 1546
BstV2I GAAGAC 2 cut(s) 226, 261
BstX2I RGATCY 3 cut(s) 459, 1393, 1543
BstYI RGATCY 3 cut(s) 459, 1393, 1543
BstZ17I GTATAC 1 cut(s) 1279
BsuI GTATCC 2 cut(s) 70, 74
BsuRI GGCC 1 cut(s) 845
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 6 cut(s) 63, 295, 410, 484, 1075, 1282
BtsI GCAGTG 1 cut(s) 1411
BtsIMutI CAGTG 4 cut(s) 91, 440, 1384, 1411
Cac8I GCNNGC 5 cut(s) 13, 430, 434, 438, 1245
CaiI CAGNNNCTG 1 cut(s) 442
CfoI GCGC 2 cut(s) 238, 264
Cfr10I RCCGGY 1 cut(s) 1416
Cfr13I GGNCC 2 cut(s) 360, 1613
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
DdeI CTNAG 6 cut(s) 39, 49, 1018, 1214, 1287, 1430
DpnI GATC 7 cut(s) 90, 294, 461, 732, 1395, 1545, 1605
DpnII GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
DraI TTTAAA 1 cut(s) 1732
Eam1104I CTCTTC 9 cut(s) 239, 365, 370, 416, 808, 820, 1123, 1353, 1637
EarI CTCTTC 9 cut(s) 239, 365, 370, 416, 808, 820, 1123, 1353, 1637
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 414, 846
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 1301
Eco47I GGWCC 2 cut(s) 360, 1613
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 4 cut(s) 47, 252, 317, 464
Eco72I CACGTG 1 cut(s) 1566
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 1290
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 1192
EcoT14I CCWWGG 2 cut(s) 414, 846
EcoT22I ATGCAT 1 cut(s) 1260
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 414, 846
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 807
FauNDI CATATG 2 cut(s) 377, 1035
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 1278
Fnu4HI GCNGC 4 cut(s) 23, 1451, 1519, 1535
FokI GGATG 6 cut(s) 50, 302, 397, 491, 1082, 1269
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 4 cut(s) 23, 1451, 1519, 1535
FspBI CTAG 3 cut(s) 429, 1013, 1397
GlaI GCGC 2 cut(s) 237, 263
GluI GCNGC 4 cut(s) 23, 1451, 1519, 1535
GsuI CTGGAG 4 cut(s) 39, 109, 1360, 1608
HaeIII GGCC 1 cut(s) 845
HapII CCGG 1 cut(s) 1417
HhaI GCGC 2 cut(s) 238, 264
Hin6I GCGC 2 cut(s) 236, 262
HinP1I GCGC 2 cut(s) 236, 262
HincII GTYRAC 4 cut(s) 565, 661, 1200, 1226
HindII GTYRAC 4 cut(s) 565, 661, 1200, 1226
HindIII AAGCTT 3 cut(s) 29, 872, 1583
HinfI GANTC 9 cut(s) 383, 508, 595, 632, 708, 1016, 1137, 1628, 1760
HpaII CCGG 1 cut(s) 1417
HphI GGTGA 4 cut(s) 430, 505, 1055, 1153
Hpy166II GTNNAC 8 cut(s) 182, 523, 565, 661, 1200, 1226, 1279, 1613
Hpy188I TCNGA 8 cut(s) 100, 297, 507, 549, 600, 1177, 1308, 1714
Hpy188III TCNNGA 7 cut(s) 126, 353, 457, 1141, 1286, 1528, 1625
Hpy8I GTNNAC 8 cut(s) 182, 523, 565, 661, 1200, 1226, 1279, 1613
HpyAV CCTTC 8 cut(s) 209, 277, 292, 466, 752, 980, 1256, 1750
HpyCH4III ACNGT 3 cut(s) 205, 658, 1693
HpyCH4IV ACGT 1 cut(s) 1565
HpyCH4V TGCA 9 cut(s) 172, 466, 670, 926, 1123, 1258, 1272, 1384, 1424
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 6 cut(s) 39, 49, 1018, 1214, 1287, 1430
HpySE526I ACGT 1 cut(s) 1565
HspAI GCGC 2 cut(s) 236, 262
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 2 cut(s) 58, 128
Lsp1109I GCAGC 4 cut(s) 34, 1437, 1505, 1546
LweI GCATC 2 cut(s) 1093, 1245
MaeI CTAG 3 cut(s) 429, 1013, 1397
MaeII ACGT 1 cut(s) 1565
MaeIII GTNAC 6 cut(s) 555, 745, 857, 866, 1159, 1433
MalI GATC 7 cut(s) 90, 294, 461, 732, 1395, 1545, 1605
MbiI CCGCTC 1 cut(s) 1041
MboI GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
MflI RGATCY 3 cut(s) 459, 1393, 1543
MhlI GDGCHC 2 cut(s) 105, 1028
MluCI AATT 5 cut(s) 112, 307, 348, 579, 919
MlyI GAGTC 4 cut(s) 502, 589, 1010, 1146
MmeI TCCRAC 2 cut(s) 185, 923
Mph1103I ATGCAT 1 cut(s) 1260
MroXI GAANNNNTTC 2 cut(s) 452, 1077
MseI TTAA 5 cut(s) 303, 837, 1731, 1740, 1777
MslI CAYNNNNRTG 3 cut(s) 518, 1377, 1507
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 1417
MspR9I CCNGG 1 cut(s) 1194
MvaI CCWGG 1 cut(s) 1194
MwoI GCNNNNNNNGC 1 cut(s) 28
NcoI CCATGG 1 cut(s) 846
NdeI CATATG 2 cut(s) 377, 1035
NdeII GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
NheI GCTAGC 1 cut(s) 428
NlaIV GGNNCC 2 cut(s) 140, 1010
NmuCI GTSAC 4 cut(s) 555, 866, 1159, 1433
NsiI ATGCAT 1 cut(s) 1260
NspI RCATGY 1 cut(s) 621
NspV TTCGAA 1 cut(s) 368
OliI CACNNNNGTG 2 cut(s) 518, 1377
PciSI GCTCTTC 1 cut(s) 365
PdmI GAANNNNTTC 2 cut(s) 452, 1077
PfeI GAWTC 5 cut(s) 383, 632, 708, 1628, 1760
PflMI CCANNNNNTGG 1 cut(s) 1407
PkrI GCNGC 4 cut(s) 24, 1452, 1520, 1536
PleI GAGTC 4 cut(s) 502, 589, 1010, 1145
PmaCI CACGTG 1 cut(s) 1566
PmlI CACGTG 1 cut(s) 1566
PpsI GAGTC 4 cut(s) 502, 589, 1010, 1145
Ppu21I YACGTR 1 cut(s) 1566
PpuMI RGGWCCY 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 1192
PspCI CACGTG 1 cut(s) 1566
PspGI CCWGG 1 cut(s) 1192
PspN4I GGNNCC 2 cut(s) 140, 1010
PspPI GGNCC 2 cut(s) 360, 1613
PspPPI RGGWCCY 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 3 cut(s) 459, 1393, 1543
PvuII CAGCTG 1 cut(s) 25
RseI CAYNNNNRTG 3 cut(s) 518, 1377, 1507
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 5 cut(s) 303, 837, 1731, 1740, 1777
SatI GCNGC 4 cut(s) 23, 1451, 1519, 1535
Sau3AI GATC 7 cut(s) 88, 292, 459, 730, 1393, 1543, 1603
Sau96I GGNCC 2 cut(s) 360, 1613
SchI GAGTC 4 cut(s) 502, 589, 1010, 1146
ScrFI CCNGG 1 cut(s) 1194
SduI GDGCHC 2 cut(s) 105, 1028
SfaNI GCATC 2 cut(s) 1093, 1245
SfcI CTRYAG 2 cut(s) 1165, 1454
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 2 cut(s) 360, 1613
SmiMI CAYNNNNRTG 3 cut(s) 518, 1377, 1507
Sse9I AATT 5 cut(s) 112, 307, 348, 579, 919
SsiI CCGC 1 cut(s) 1041
SspMI CTAG 3 cut(s) 429, 1013, 1397
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 1192
StyI CCWWGG 2 cut(s) 414, 846
TaaI ACNGT 3 cut(s) 205, 658, 1693
TaiI ACGT 1 cut(s) 1568
TaqI TCGA 6 cut(s) 368, 456, 627, 769, 820, 975
TaqII GACCGA 1 cut(s) 1630
TasI AATT 5 cut(s) 112, 307, 348, 579, 919
TfiI GAWTC 5 cut(s) 383, 632, 708, 1628, 1760
Tru1I TTAA 5 cut(s) 303, 837, 1731, 1740, 1777
Tru9I TTAA 5 cut(s) 303, 837, 1731, 1740, 1777
TscAI CASTG 4 cut(s) 98, 447, 1384, 1418
TseFI GTSAC 4 cut(s) 555, 866, 1159, 1433
TseI GCWGC 4 cut(s) 22, 1450, 1518, 1534
Tsp45I GTSAC 4 cut(s) 555, 866, 1159, 1433
TspRI CASTG 4 cut(s) 98, 447, 1384, 1418
Van91I CCANNNNNTGG 1 cut(s) 1407
VpaK11BI GGWCC 2 cut(s) 360, 1613
XagI CCTNNNNNAGG 1 cut(s) 1290
XapI RAATTY 3 cut(s) 112, 307, 579
XceI RCATGY 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 1278
XmnI GAANNNNTTC 2 cut(s) 452, 1077
XspI CTAG 3 cut(s) 429, 1013, 1397
Zsp2I ATGCAT 1 cut(s) 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.