RchiOBHm_Chr1g0381111

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000154
Physical Location & Seq
Reverse (-)
66485121 .. 66489860
4740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60431

Sequence Viewer

Length: 4023 bp
ATGGAAAGTTCACGGAGTACCATGATCCGACTCAACCACTCTAATTGGATTACATGGAAGCCGAGAATGGAGGATATTCTCTATTGCAAAGATTTGCATGAGCCAATCGTAGGAGAGGCGGCCAAGCCGGAAGGAACTTCAGTTCCGACTTGGACTAAGATGAACCGCAAAGCCATCGGTTACATCCGCGAATGGGTGGATGACAGTGTATTCCACCATGTGTCTAATGAAACCAATGCACGTGAATTATGGCTGAAGTTGACGTCCTTGTTCGAGAAGAAAACTGCTGCCAAGAAAGCATTTCTAATCAAGGAGCTCGTAAACATGAAGTACAAAGATGGTGTTAGAGTGACCGAGCACCTCAACAACTTCCAAAGTACAATCAATCAATTGGCCACGATGGACATGAAGATTGATGACGAGTTGCAAGCCTTGTTGCTATTGGGATCATTGCCGGACAATTGGGAGACCTTTGTTGTAACTGTAAGTAATTCTGCTCCAGATGGTGTATTGTCTATGGATAATGTTAAAAATAACATGTTGAATGAAGAAACTAGAAGAAAATCTTCAAGCTCGGACAATAGCCAAGTCTTTGTGACGGAGCATAGAGGAAGGAGCAAAAGCAGAGGACCCAAAGGCCATGGAAGAAGTATGAGCAGATCCAGAACAAGATTCAATGGAAAATGCCATCATTGTGGTATTTTTGGCCACATGAAGAAGAATTGCAACAAATTGAAGAAGGATCCGAAGGAGGGTCGAGATGGCAATACTCATCAACCGAACGATGACACGAGAAACACTGCAGCTTCCGTGTCTCATGATGAATGTGAGTTCCTTTGTCTTGAAGGTGAATGCTTACATGTTGATGATTGTTCCAGTGTTGCATGGGTCGTTGATTCTGGAGCTTCTTTCCATGCTACTCCACACTTGGAGTACTTCACTACATACCAAGGCGGTGACTTTGGGAGGGTGAAGATGGGCAACGATGGTTACTCCAAGATTTCAGGAATTGGAGATATTTGTTTTGAGACCGATTTGGGCAACAAGCTTATGTTAAAAGATGTTAGATATGTTCCGGGTCTACGTCTCAATTTGATGTCAACTGGTGTGCTTGACCGACAAGGGTTTCATCATCATGGAGGTGATCAAAAGTGGAGGCTTACCAAGGGATCGTTGGTGATTGCTAGAGGGAAGATGTGTTGCACCCTCTATAAGACATATGGCAAAATATGCAAAGGAGAATTGAATGTTGCAGACGACTCTTCTCCAAGTCTATGGCACAAGCGACTAGGTCATATGAGTGAGAAGGGATTGCAAGTTTTGGCAAAGAAGTCTCTAATTCCCTTTGCCAAAGGTACCTCACTTGACTCTTGTGATTATTGTTTATTTGGTAAACAACATAAAGTTAGTTTCACAAGAACATTTACGAGAAAAGAAAATGTATTAGACCTAGTACACTCAGATGTATGTGGCCCTATGGAAGTTGAATCAGTAGGTCATAATAAATATTTTGTCACTTATATTGATGATGCTTCACGAAAGGTTTGGGTTTATTTGTTGAAAACAAAAGACCAGGTGTTTCAAACCTTTAAGGAATTTCATGCCATGGTGGAGAGGGAGACAGGGAGAACTCTCAAATGTATCCGTAGTGACAATGGCGGAGAATACACTTCGAACGAGTTCAGAGATTATTGTTCGAAGCATGGCATCAAACACGTGAAGACAATTCCTGGCACCCCACAACATAATGGTGTCGCAGAGAGGATGAACCGCACCATTCTAGAAAAAGTGAGAAGCATGCTGAAGACGGCCAACCTGACAAAGAAGTTTTGGGGCGAAGCAATGACAACTGCATGTTACCTTATTAACCGAACACCATGTGTACCGTTGGGCTTGGAGACTCCCGAAGGCGTATGGACCGGTAGAAGCGCTTCATATTCCCACTTGAGGGTGTTTGGGTGCAAAGCATTTGCACATGTGCCAAAGGAGCAAAGATCAAAGCTGGATGACAAGGCCATGCCGTGTATCTTTCTTGGATATGGCAATGAAGAGATGGGCTACCGATTGTGGAATCCAAAGACCAAGAAATTATTCAGAAGCAGAGATGTGGTGTTTCATGAAGGTCAAACCATTGCGGATTTTGACAAAAATGAAGTAGAACATGCAGACCAGCTCACATACGATTCATCACCGCTTCAAGAAGAACCTAGTGACAAAGCTCAAGATATGGTAAATGAAGATGTTCCTGATATGGCGGAAGCAGAAGCAGCAGAACCTGAAGATAATGATCAGGGGGAGCCAAATCAGGGGGAGCAGCTAGAAAATGCCCAAGTACCAGTTCGAAGATCCAACAGAGAGCCAAAGCCAAATACCAAGTATCATTCTTCACAATATATATTGGTGACTAGTGATGGAGATGATCCATATTCCAGATACATTCTGTTGACCAATGATGGAGAGCCTGAATGCTTTGAGGAGGCAAAGACTCATGCAGACTGTGATAAGTGGATGTTGGCGATGAAGTCTGAAATGGAGTCCTTATTGAAGAATGACACCTATGAATTGGTGGAGCTTCCTAAAGGCAGAAAAGCACTCAAAAATAAATGGGTGTTCAAATTGAAGAGAGACGAGAACGAACAGTTGACAAAGTTCAAGGCTCGCTTGGTAGTGAAAGGTTTTGGGCAGAAGGAAGGAATAGATTTTGATGAGATCTTCTCACCAGTTGTCAAGATGACTTCTATCAGAATCATTTTGGGCATGGCAGCTAGCATGGATCTTGAGGTGGAGCAGTTAGATGTGAAAACTGCATTTCTTCATGGTGATTTGGAAGAAGAAATATACATGGAGCAACCAGAAGGTTTCGAAGTCGAGGGAAAGCAGCACATGGTTTGCAAGTTGAAGAAAAGTCTATACGGGCTTAAGCAAGCGCCAAGGCAATGGTATAAGAAATTTGACTCATTCATGGTGGGTCATGGGTACAAGAGAACTGATGCAGATCCATGTGTGTATCTCCAGCGGTTTACTGGAGGTAACTTCATTATCTTGTTGCTCTATGTTGATGATATGTTAATAGTGGGCAAAGATGTTTCTATGATTCATAAGTTGAAAGCAGATTTATCAAAGTCATTTGATATGAAAGACTTAGGGCCAGCTAAGCAGATTTTGGGCATGGAGATTACTCGTGACAGGCAGGCGAAGAAATTATGGCTGTCACAGGAGAGGTATGTTGAACGAGTGCTTGAAAGGTTCAACATGAAAGAAGCTAAGTCAGTAAGCTCACCTCTAGGTAATCATTTCAAGTTAAGCAGATTATCATGTCCAACTACACAAGTGGAGAAAGACAAGATGGCAGGTATCCCTTACTCGTCAGCTGTTGGTAGTCTTATGTATGCCATGGTATGCACTCGCCCTGATATTGCACATGCAGTTGGTGTTGTTAGTAGATATCTTTCTAATCCTGGCAGAGAGCATTGGGAAGCTGTCAAGTGGATACTCAAATATTTGAGGGGCACCTCAAAGTTGTGTTTATGTTTTGGTGGATCAGAACCAATCTTGGAAGGTTTTACAGATGCAGATTTGGCAGGAGACCTTGATAATCGAAAGTCCACTTCTGCATACTTATTTACATTTTCTGGGGGAGCTGTGTCATGGCAGTCCAAGTTACAGAAATGTGTTGCATTATCCACCACAGAATCAGAGTACTTAGCAGCAAATGAAGCTGGCAAGGAAATGATATGGCTGCAAAGGTTCGTTCAAGAGTTGGGTGTGAAGCAAGGAAATTATGTGGTACATTGTGATAGTCAGAGTGCTATTCACTTGAGCAAAAATTCAATGTATCACCCTCGCACTAAGCACATTGATCATCGGTATCATTGGATCCGAGATGCAGTGTCAAAGAAGTTTTTCCAGTTGAGGAAAATCCACACCAACAAGAACATTTCAGATATGTTGACCAAAGTTGTTCAACAACAAAAGTTTGAGTTTTGCAGAAGCGCGTCAGGACTGACGCATCCCTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

1340

Amino Acids

152.53

Weight (kDa)

8.52

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 23 - 191 2.4e-38 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 296 - 376 1.8e-22 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 403 - 466 6.3e-15 GAG-pre-integrase domain
rve PF00665 484 - 580 3.4e-13 Integrase core domain
SH3_retrovirus PF25597 654 - 712 7.3e-26 Retroviral polymerase SH3-like domain
RVT_2 PF07727 850 - 1095 8.2e-81 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 3341
Acc65I GGTACC 1 cut(s) 1355
AccB1I GGYRCC 3 cut(s) 1355, 1733, 3509
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 2 cut(s) 189, 3995
AcoI YGGCCR 4 cut(s) 120, 393, 706, 1809
AcsI RAATTY 3 cut(s) 1595, 2948, 3826
AcuI CTGAAG 4 cut(s) 123, 275, 1823, 2298
AcvI CACGTG 2 cut(s) 242, 1717
AcyI GRCGYC 1 cut(s) 263
AdeI CACNNNGTG 2 cut(s) 220, 1880
AfeI AGCGCT 1 cut(s) 1930
AfiI CCNNNNNNNGG 6 cut(s) 110, 193, 752, 1947, 1948, 2306
AflII CTTAAG 1 cut(s) 2918
AflIII ACRYGT 4 cut(s) 537, 859, 1714, 1975
AgeI ACCGGT 1 cut(s) 1919
AhlI ACTAGT 1 cut(s) 2405
AjnI CCWGG 3 cut(s) 1572, 1729, 3457
AjuI GAANNNNNNNTTGG 4 cut(s) 2075, 2107, 2322, 2354
AloI GAACNNNNNNTCC 4 cut(s) 126, 127, 158, 159
Alw21I GWGCWC 2 cut(s) 318, 360
Alw26I GTCTC 9 cut(s) 461, 819, 1022, 1091, 1338, 1613, 1892, 2619, 3579
AlwNI CAGNNNCTG 1 cut(s) 2276
Aor51HI AGCGCT 1 cut(s) 1930
AoxI GGCC 8 cut(s) 120, 393, 637, 706, 1471, 1809, 2013, 3146
ApeKI GCWGC 8 cut(s) 287, 803, 2267, 2314, 2762, 2878, 3707, 3739
ApoI RAATTY 3 cut(s) 1595, 2948, 3826
AsiGI ACCGGT 1 cut(s) 1919
Asp700I GAANNNNTTC 6 cut(s) 565, 1679, 1930, 2090, 2241, 3902
Asp718I GGTACC 1 cut(s) 1355
AspLEI GCGC 3 cut(s) 1931, 2929, 3995
AspS9I GGNCC 4 cut(s) 629, 1472, 1917, 3146
AsuC2I CCSGG 1 cut(s) 1077
AsuII TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
AsuNHI GCTAGC 1 cut(s) 2765
AvaII GGWCC 2 cut(s) 629, 1917
BaeGI GKGCMC 1 cut(s) 3512
BalI TGGCCA 2 cut(s) 395, 708
BamHI GGATCC 2 cut(s) 742, 3876
BanI GGYRCC 3 cut(s) 1355, 1733, 3509
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 1915, 1947
BauI CACGAG 2 cut(s) 790, 3180
BbrPI CACGTG 2 cut(s) 242, 1717
BbsI GAAGAC 2 cut(s) 1727, 1811
Bbv12I GWGCWC 2 cut(s) 318, 360
BbvI GCAGC 8 cut(s) 274, 815, 2279, 2326, 2774, 2890, 3719, 3726
BceAI ACGGC 2 cut(s) 1824, 2005
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 3 cut(s) 1574, 1731, 3459
BciVI GTATCC 3 cut(s) 1652, 3365, 3483
BclI TGATCA 3 cut(s) 1144, 2287, 3859
BcnI CCSGG 1 cut(s) 1077
BcoDI GTCTC 9 cut(s) 461, 819, 1022, 1091, 1338, 1613, 1892, 2619, 3579
BcuI ACTAGT 1 cut(s) 2405
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 2 cut(s) 1932, 2930
BfrI CTTAAG 1 cut(s) 2918
BfuAI ACCTGC 1 cut(s) 3341
BfuI GTATCC 3 cut(s) 1652, 3365, 3483
BglII AGATCT 1 cut(s) 2709
BisI GCNGC 9 cut(s) 120, 288, 804, 2268, 2315, 2763, 2879, 3708, 3740
BlpI GCTNAGC 1 cut(s) 3153
BlsI GCNGC 9 cut(s) 121, 289, 805, 2269, 2316, 2764, 2880, 3709, 3741
BmcAI AGTACT 2 cut(s) 935, 3701
Bme1390I CCNGG 4 cut(s) 1077, 1574, 1731, 3459
Bme18I GGWCC 2 cut(s) 629, 1917
BmgT120I GGNCC 4 cut(s) 629, 1472, 1917, 3146
BmiI GGNNCC 7 cut(s) 631, 744, 1357, 1735, 2298, 3511, 3878
BmrFI CCNGG 4 cut(s) 1077, 1574, 1731, 3459
BmsI GCATC 6 cut(s) 1519, 1716, 2980, 3559, 3874, 4018
BmtI GCTAGC 1 cut(s) 2769
BpiI GAAGAC 2 cut(s) 1727, 1811
BplI GAGNNNNNCTC 2 cut(s) 2699, 2731
BpmI CTGGAG 4 cut(s) 483, 921, 2996, 3045
Bpu1102I GCTNAGC 1 cut(s) 3153
Bpu14I TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
BpuEI CTTGAG 4 cut(s) 1966, 2205, 2798, 3838
BpuMI CCSGG 1 cut(s) 1077
BsaAI YACGTR 2 cut(s) 242, 1717
BsaBI GATNNNNATC 2 cut(s) 2286, 2994
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 3 cut(s) 461, 1022, 3579
BsaJI CCNNGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
BsaWI WCCGGW 1 cut(s) 1919
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 193, 752, 1947, 1948, 2306
Bse118I RCCGGY 1 cut(s) 1919
Bse1I ACTGG 6 cut(s) 876, 1108, 2336, 2720, 3028, 3907
Bse3DI GCAATG 5 cut(s) 449, 1848, 2050, 2130, 2942
Bse8I GATNNNNATC 2 cut(s) 2286, 2994
BseBI CCWGG 3 cut(s) 1574, 1731, 3459
BseDI CCNNGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
BseGI GGATG 6 cut(s) 183, 205, 1770, 2011, 2514, 4009
BseJI GATNNNNATC 2 cut(s) 2286, 2994
BseLI CCNNNNNNNGG 6 cut(s) 110, 193, 752, 1947, 1948, 2306
BseMI GCAATG 5 cut(s) 449, 1848, 2050, 2130, 2942
BseMII CTCAG 1 cut(s) 1473
BseNI ACTGG 6 cut(s) 876, 1108, 2336, 2720, 3028, 3907
BseRI GAGGAG 1 cut(s) 2489
BseSI GKGCMC 1 cut(s) 3512
BseXI GCAGC 8 cut(s) 274, 815, 2279, 2326, 2774, 2890, 3719, 3726
Bsh1236I CGCG 2 cut(s) 189, 3995
BshFI GGCC 8 cut(s) 122, 395, 639, 708, 1473, 1811, 2015, 3148
BshNI GGYRCC 3 cut(s) 1355, 1733, 3509
BshTI ACCGGT 1 cut(s) 1919
BsiHKAI GWGCWC 2 cut(s) 318, 360
BsiSI CCGG 4 cut(s) 128, 455, 1076, 1920
BslI CCNNNNNNNGG 6 cut(s) 110, 193, 752, 1947, 1948, 2306
BsmAI GTCTC 9 cut(s) 461, 819, 1022, 1091, 1338, 1613, 1892, 2619, 3579
BsmBI CGTCTC 2 cut(s) 1091, 2619
BsmI GAATGC 2 cut(s) 857, 2471
BsnI GGCC 8 cut(s) 122, 395, 639, 708, 1473, 1811, 2015, 3148
Bso31I GGTCTC 3 cut(s) 461, 1022, 3579
Bsp119I TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
Bsp1286I GDGCHC 3 cut(s) 318, 360, 3512
Bsp1720I GCTNAGC 1 cut(s) 3153
Bsp19I CCATGG 3 cut(s) 640, 1605, 3393
BspANI GGCC 8 cut(s) 122, 395, 639, 708, 1473, 1811, 2015, 3148
BspCNI CTCAG 1 cut(s) 1472
BspFNI CGCG 2 cut(s) 189, 3995
BspHI TCATGA 2 cut(s) 817, 2116
BspLI GGNNCC 7 cut(s) 631, 744, 1357, 1735, 2298, 3511, 3878
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 3341
BspOI GCTAGC 1 cut(s) 2769
BspT104I TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
BspT107I GGYRCC 3 cut(s) 1355, 1733, 3509
BspTI CTTAAG 1 cut(s) 2918
BspTNI GGTCTC 3 cut(s) 461, 1022, 3579
BsrDI GCAATG 5 cut(s) 449, 1848, 2050, 2130, 2942
BsrFI RCCGGY 1 cut(s) 1919
BsrI ACTGG 6 cut(s) 876, 1108, 2336, 2720, 3028, 3907
BssAI RCCGGY 1 cut(s) 1919
BssECI CCNNGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
BssNI GRCGYC 1 cut(s) 263
BssSI CACGAG 2 cut(s) 790, 3180
BssT1I CCWWGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
Bst2BI CACGAG 2 cut(s) 790, 3180
Bst2UI CCWGG 3 cut(s) 1574, 1731, 3459
Bst4CI ACNGT 5 cut(s) 206, 484, 1887, 2498, 2640
Bst6I CTCTTC 3 cut(s) 1267, 2043, 2615
BstACI GRCGYC 1 cut(s) 263
BstAFI CTTAAG 1 cut(s) 2918
BstAPI GCANNNNNTGC 1 cut(s) 1230
BstBAI YACGTR 2 cut(s) 242, 1717
BstBI TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
BstC8I GCNNGC 8 cut(s) 429, 1799, 2659, 2767, 2925, 3150, 3192, 3721
BstDEI CTNAG 7 cut(s) 156, 1459, 3142, 3153, 3264, 3703, 3849
BstDSI CCRYGG 3 cut(s) 640, 1605, 3393
BstF5I GGATG 6 cut(s) 183, 205, 1770, 2011, 2514, 4009
BstFNI CGCG 2 cut(s) 189, 3995
BstH2I RGCGCY 2 cut(s) 1932, 2930
BstHHI GCGC 3 cut(s) 1931, 2929, 3995
BstMAI GTCTC 9 cut(s) 461, 819, 1022, 1091, 1338, 1613, 1892, 2619, 3579
BstMWI GCNNNNNNNGC 7 cut(s) 296, 1230, 1987, 2267, 3154, 3578, 3716
BstNI CCWGG 3 cut(s) 1574, 1731, 3459
BstNSI RCATGY 7 cut(s) 541, 863, 1801, 1857, 1979, 2165, 3425
BstSCI CCNGG 4 cut(s) 1075, 1572, 1729, 3457
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 3512
BstUI CGCG 2 cut(s) 189, 3995
BstV1I GCAGC 8 cut(s) 274, 815, 2279, 2326, 2774, 2890, 3719, 3726
BstV2I GAAGAC 2 cut(s) 1727, 1811
BstX2I RGATCY 7 cut(s) 659, 742, 2345, 2709, 2773, 2995, 3876
BstXI CCANNNNNNTGG 3 cut(s) 695, 1275, 2937
BstYI RGATCY 7 cut(s) 659, 742, 2345, 2709, 2773, 2995, 3876
BsuI GTATCC 3 cut(s) 1652, 3365, 3483
BsuRI GGCC 8 cut(s) 122, 395, 639, 708, 1473, 1811, 2015, 3148
BtgI CCRYGG 3 cut(s) 640, 1605, 3393
BtgZI GCGATG 1 cut(s) 2531
BtsCI GGATG 6 cut(s) 183, 205, 1770, 2011, 2514, 4009
BtsI GCAGTG 2 cut(s) 798, 3894
BtsIMutI CAGTG 4 cut(s) 211, 798, 883, 3894
BveI ACCTGC 1 cut(s) 3341
Cac8I GCNNGC 8 cut(s) 429, 1799, 2659, 2767, 2925, 3150, 3192, 3721
CaiI CAGNNNCTG 1 cut(s) 2276
CciI TCATGA 2 cut(s) 817, 2116
CfoI GCGC 3 cut(s) 1931, 2929, 3995
Cfr10I RCCGGY 1 cut(s) 1919
Cfr13I GGNCC 4 cut(s) 629, 1472, 1917, 3146
CseI GACGC 2 cut(s) 3984, 4015
CsiI ACCWGGT 1 cut(s) 1572
CspAI ACCGGT 1 cut(s) 1919
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
DdeI CTNAG 7 cut(s) 156, 1459, 3142, 3153, 3264, 3703, 3849
DraIII CACNNNGTG 2 cut(s) 220, 1880
EaeI YGGCCR 4 cut(s) 120, 393, 706, 1809
Eam1104I CTCTTC 3 cut(s) 1267, 2043, 2615
EarI CTCTTC 3 cut(s) 1267, 2043, 2615
EciI GGCGGA 2 cut(s) 1674, 2270
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 3 cut(s) 461, 1022, 3579
Eco32I GATATC 1 cut(s) 3446
Eco47I GGWCC 2 cut(s) 629, 1917
Eco47III AGCGCT 1 cut(s) 1930
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 4 cut(s) 123, 275, 1823, 2298
Eco72I CACGTG 2 cut(s) 242, 1717
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 629
EcoRII CCWGG 3 cut(s) 1572, 1729, 3457
EcoRV GATATC 1 cut(s) 3446
EcoT14I CCWWGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
Esp3I CGTCTC 2 cut(s) 1091, 2619
FalI AAGNNNNNCTT 4 cut(s) 550, 582, 2645, 2677
FauNDI CATATG 2 cut(s) 1219, 1296
FbaI TGATCA 3 cut(s) 1144, 2287, 3859
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 9 cut(s) 120, 288, 804, 2268, 2315, 2763, 2879, 3708, 3740
FokI GGATG 6 cut(s) 170, 212, 1777, 2018, 2521, 3996
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 9 cut(s) 120, 288, 804, 2268, 2315, 2763, 2879, 3708, 3740
GlaI GCGC 3 cut(s) 1930, 2928, 3994
GluI GCNGC 9 cut(s) 120, 288, 804, 2268, 2315, 2763, 2879, 3708, 3740
GsuI CTGGAG 4 cut(s) 483, 921, 2996, 3045
HaeII RGCGCY 2 cut(s) 1932, 2930
HaeIII GGCC 8 cut(s) 122, 395, 639, 708, 1473, 1811, 2015, 3148
HapII CCGG 4 cut(s) 128, 455, 1076, 1920
HgaI GACGC 2 cut(s) 3984, 4015
HhaI GCGC 3 cut(s) 1931, 2929, 3995
Hin1I GRCGYC 1 cut(s) 263
Hin6I GCGC 3 cut(s) 1929, 2927, 3993
HinP1I GCGC 3 cut(s) 1929, 2927, 3993
HincII GTYRAC 5 cut(s) 261, 1101, 2445, 2643, 3951
HindII GTYRAC 5 cut(s) 261, 1101, 2445, 2643, 3951
HindIII AAGCTT 1 cut(s) 1046
HpaII CCGG 4 cut(s) 128, 455, 1076, 1920
HpyCH4III ACNGT 5 cut(s) 206, 484, 1887, 2498, 2640
HpyCH4IV ACGT 4 cut(s) 241, 263, 1084, 1716
HpyF10VI GCNNNNNNNGC 7 cut(s) 296, 1230, 1987, 2267, 3154, 3578, 3716
HpyF3I CTNAG 7 cut(s) 156, 1459, 3142, 3153, 3264, 3703, 3849
HpySE526I ACGT 4 cut(s) 241, 263, 1084, 1716
Hsp92I GRCGYC 1 cut(s) 263
HspAI GCGC 3 cut(s) 1929, 2927, 3993
KpnI GGTACC 1 cut(s) 1359
Ksp22I TGATCA 3 cut(s) 1144, 2287, 3859
Lsp1109I GCAGC 8 cut(s) 274, 815, 2279, 2326, 2774, 2890, 3719, 3726
LweI GCATC 6 cut(s) 1519, 1716, 2980, 3559, 3874, 4018
MabI ACCWGGT 1 cut(s) 1572
MaeII ACGT 4 cut(s) 241, 263, 1084, 1716
MfeI CAATTG 2 cut(s) 389, 460
MflI RGATCY 7 cut(s) 659, 742, 2345, 2709, 2773, 2995, 3876
MhlI GDGCHC 3 cut(s) 318, 360, 3512
MlsI TGGCCA 2 cut(s) 395, 708
MluNI TGGCCA 2 cut(s) 395, 708
MlyI GAGTC 7 cut(s) 24, 1253, 1361, 1894, 2479, 2543, 2948
MmeI TCCRAC 4 cut(s) 52, 170, 2373, 3344
Mox20I TGGCCA 2 cut(s) 395, 708
MroXI GAANNNNTTC 6 cut(s) 565, 1679, 1930, 2090, 2241, 3902
MscI TGGCCA 2 cut(s) 395, 708
MseI TTAA 7 cut(s) 528, 1055, 1590, 1866, 2919, 3068, 3302
MslI CAYNNNNRTG 7 cut(s) 693, 864, 1134, 1140, 1299, 1461, 1749
Msp20I TGGCCA 2 cut(s) 395, 708
MspA1I CMGCKG 2 cut(s) 3016, 3371
MspCI CTTAAG 1 cut(s) 2918
MspI CCGG 4 cut(s) 128, 455, 1076, 1920
MspR9I CCNGG 4 cut(s) 1077, 1574, 1731, 3459
MunI CAATTG 2 cut(s) 389, 460
Mva1269I GAATGC 2 cut(s) 857, 2471
MvaI CCWGG 3 cut(s) 1574, 1731, 3459
MvnI CGCG 2 cut(s) 189, 3995
MwoI GCNNNNNNNGC 7 cut(s) 296, 1230, 1987, 2267, 3154, 3578, 3716
NciI CCSGG 1 cut(s) 1077
NcoI CCATGG 3 cut(s) 640, 1605, 3393
NdeI CATATG 2 cut(s) 1219, 1296
NheI GCTAGC 1 cut(s) 2765
NlaIV GGNNCC 7 cut(s) 631, 744, 1357, 1735, 2298, 3511, 3878
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 9 cut(s) 349, 595, 956, 1513, 1649, 2210, 2401, 3182, 3210
NspI RCATGY 7 cut(s) 541, 863, 1801, 1857, 1979, 2165, 3425
NspV TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
PaeI GCATGC 1 cut(s) 1801
PagI TCATGA 2 cut(s) 817, 2116
PciI ACATGT 3 cut(s) 537, 859, 1975
PctI GAATGC 2 cut(s) 857, 2471
PdmI GAANNNNTTC 6 cut(s) 565, 1679, 1930, 2090, 2241, 3902
PfeI GAWTC 8 cut(s) 672, 896, 1487, 2071, 2183, 2745, 3094, 3692
PflFI GACNNNGTC 1 cut(s) 1290
PinAI ACCGGT 1 cut(s) 1919
PkrI GCNGC 9 cut(s) 121, 289, 805, 2269, 2316, 2764, 2880, 3709, 3741
PleI GAGTC 7 cut(s) 24, 1253, 1361, 1894, 2479, 2542, 2948
PmaCI CACGTG 2 cut(s) 242, 1717
PmlI CACGTG 2 cut(s) 242, 1717
PpsI GAGTC 7 cut(s) 24, 1253, 1361, 1894, 2479, 2542, 2948
Ppu21I YACGTR 2 cut(s) 242, 1717
PpuMI RGGWCCY 1 cut(s) 629
PscI ACATGT 3 cut(s) 537, 859, 1975
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 3 cut(s) 1572, 1729, 3457
PspCI CACGTG 2 cut(s) 242, 1717
PspGI CCWGG 3 cut(s) 1572, 1729, 3457
PspN4I GGNNCC 7 cut(s) 631, 744, 1357, 1735, 2298, 3511, 3878
PspPI GGNCC 4 cut(s) 629, 1472, 1917, 3146
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 2276
PsuI RGATCY 7 cut(s) 659, 742, 2345, 2709, 2773, 2995, 3876
PsyI GACNNNGTC 1 cut(s) 1290
PvuII CAGCTG 1 cut(s) 3371
RseI CAYNNNNRTG 7 cut(s) 693, 864, 1134, 1140, 1299, 1461, 1749
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 7 cut(s) 528, 1055, 1590, 1866, 2919, 3068, 3302
SatI GCNGC 9 cut(s) 120, 288, 804, 2268, 2315, 2763, 2879, 3708, 3740
Sau96I GGNCC 4 cut(s) 629, 1472, 1917, 3146
ScaI AGTACT 2 cut(s) 935, 3701
SchI GAGTC 7 cut(s) 24, 1253, 1361, 1894, 2479, 2543, 2948
ScrFI CCNGG 4 cut(s) 1077, 1574, 1731, 3459
SduI GDGCHC 3 cut(s) 318, 360, 3512
SexAI ACCWGGT 1 cut(s) 1572
SfaNI GCATC 6 cut(s) 1519, 1716, 2980, 3559, 3874, 4018
SfcI CTRYAG 1 cut(s) 801
SfuI TTCGAA 4 cut(s) 1673, 1697, 2341, 2862
SinI GGWCC 2 cut(s) 629, 1917
SmiMI CAYNNNNRTG 7 cut(s) 693, 864, 1134, 1140, 1299, 1461, 1749
SmlI CTYRAG 5 cut(s) 1945, 2220, 2777, 2918, 3817
SmoI CTYRAG 5 cut(s) 1945, 2220, 2777, 2918, 3817
SpeI ACTAGT 1 cut(s) 2405
SphI GCATGC 1 cut(s) 1801
SspI AATATT 2 cut(s) 1508, 3500
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 1075, 1572, 1729, 3457
StyI CCWWGG 6 cut(s) 640, 949, 1164, 1605, 2930, 3393
TaaI ACNGT 5 cut(s) 206, 484, 1887, 2498, 2640
TaiI ACGT 4 cut(s) 244, 266, 1087, 1719
TaqI TCGA 8 cut(s) 273, 757, 1673, 1697, 2341, 2862, 2868, 3598
TaqII GACCGA 3 cut(s) 368, 1046, 1131
TatI WGTACW 5 cut(s) 330, 377, 933, 1453, 3699
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 8 cut(s) 672, 896, 1487, 2071, 2183, 2745, 3094, 3692
Tru1I TTAA 7 cut(s) 528, 1055, 1590, 1866, 2919, 3068, 3302
Tru9I TTAA 7 cut(s) 528, 1055, 1590, 1866, 2919, 3068, 3302
TscAI CASTG 4 cut(s) 211, 805, 883, 3894
TseFI GTSAC 9 cut(s) 349, 595, 956, 1513, 1649, 2210, 2401, 3182, 3210
TseI GCWGC 8 cut(s) 287, 803, 2267, 2314, 2762, 2878, 3707, 3739
Tsp45I GTSAC 9 cut(s) 349, 595, 956, 1513, 1649, 2210, 2401, 3182, 3210
TspGWI ACGGA 4 cut(s) 28, 614, 799, 1634
TspRI CASTG 4 cut(s) 211, 805, 883, 3894
Tth111I GACNNNGTC 1 cut(s) 1290
Vha464I CTTAAG 1 cut(s) 2918
VpaK11BI GGWCC 2 cut(s) 629, 1917
XapI RAATTY 3 cut(s) 1595, 2948, 3826
XbaI TCTAGA 1 cut(s) 1780
XceI RCATGY 7 cut(s) 541, 863, 1801, 1857, 1979, 2165, 3425
XcmI CCANNNNNNNNNTGG 2 cut(s) 1171, 3020
XmiI GTMKAC 1 cut(s) 1081
XmnI GAANNNNTTC 6 cut(s) 565, 1679, 1930, 2090, 2241, 3902
ZraI GACGTC 1 cut(s) 264
ZrmI AGTACT 2 cut(s) 935, 3701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.