Rw5G033610

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000154
Physical Location & Seq
Reverse (-)
57226115 .. 57227719
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033610.1

Sequence Viewer

Length: 1284 bp
ATGGCCACAGAATCAAATTTTGTGCAGCCTTCGATCCCAAAGTTCGATGGTCATTATGACCATTGGAGTATGCTCATGGAAAACTTCATGCGGTCAAAGGAGTACTGGTGTGTTGTTGAAAATGAAGTCCGTGAACCAGCAGCTGGAGTTGCACTGACAGAGGTTCAGCAGAAGAAGTTGGAGGAGCTGAAGTTGAAAGATCTCAAGGCTAAGAACTATCTGTTTCAAGCAATTGATCGTGATCTTTTGGAGACCATTCTCCAAAAGGACACATCGAAACAGATTTGGGATGCCATGAAGCAGAAATATCAGGGGTCAACAAGAGTGAAAAGGCAGCAGCTGCAAGCTCTTCGCAAGGAGTTTGAGGTTCTCCACATGAAGGAAGGAGAATATGTTGATGAGTATTTTTCAAGAACACTTTCAATAGCCAACAAGATGAGTGTTCATGGTGGAAAGCTTGAGAATGTAGCAGTGGTGGAGATGGTCCTGCGATCCATGACATCAAAATTTGATTATGTGGTCTGCTCAATTGAGGAGTCGAAAAATGTTGAAGAGATGTCTATTGAGGAATTGCACAGCTCACTTTTGAAAGCTAATTTTGCAGAGAAAGAAGAGAAGGAGGAAGAAATTTTGTTGATGGCATATCATGAGGGGACAAATACAGATGTGTGGTACTTAGACTCTGGTTGTAGCAATCATATGTGCGGTAACAAGTACTTATTTTCAGATTATGATGAATTCTTCAAAGATACTGTGAAGCTTGGAAATGATGCTAAGATGATTGTTAGCAACCTCATCAGTATTGGGCAATTGCAAGAAAAGGGATACACGATCATTATGAGGAAAGGCTGCTGCCAAATCATGCATCCAGAAAAAGGACTGATAGCTCAGGTTACCATGACAACAAACCGTATGTTTCCTCTACACATCCAACATGATATTCAAACTTGTTACACTATGCAAATGTCAGATGCATCATGGCTGTGGCATATGCGTTATGGTCATCTTAATTTCAATGGCTTGAGAACGCTGCAACAAAGGAGTTTAGTGACAGGTCTTCCTCATATCACTTGTTCTACTAGAGTGTGTGAAGAGTGTGTAATTGGGAAGCAACACCGAGACCCATTTCCGAAAGCAGGAGCATGGAGAGCCAAAACGGTACTGCAGCTTGTTCATTCAGACATATGTGGTCCCATCCATCCAGTCTCAAATGGAAACAAAAGGTACTTTATTACTTTTACTGATGACTTTAGTAGAAAGACATGGGTATACTTCATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

427

Amino Acids

49.68

Weight (kDa)

6.37

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 26 - 206 3.6e-26 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 224 - 261 6.6e-12 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 307 - 371 1e-15 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1269
AciI CCGC 2 cut(s) 91, 705
AclWI GGATC 2 cut(s) 28, 486
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 16, 506, 627, 737
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 5 cut(s) 104, 674, 716, 1161, 1226
AfiI CCNNNNNNNGG 4 cut(s) 143, 379, 875, 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
Alw26I GTCTC 3 cut(s) 245, 1113, 1210
AlwI GGATC 2 cut(s) 28, 486
AlwNI CAGNNNCTG 2 cut(s) 143, 340
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 9 cut(s) 25, 140, 334, 337, 340, 849, 852, 1030, 1165
ApoI RAATTY 4 cut(s) 16, 506, 627, 737
Asp700I GAANNNNTTC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 484, 1190
AvaII GGWCC 2 cut(s) 484, 1190
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 1049
BbvI GCAGC 9 cut(s) 37, 152, 327, 346, 349, 836, 839, 1017, 1177
BccI CCATC 5 cut(s) 41, 475, 631, 1202, 1206
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 818
BcoDI GTCTC 3 cut(s) 245, 1113, 1210
BfaI CTAG 1 cut(s) 1080
BfmI CTRYAG 1 cut(s) 1163
BfuI GTATCC 1 cut(s) 818
BglII AGATCT 1 cut(s) 199
BisI GCNGC 9 cut(s) 26, 141, 335, 338, 341, 850, 853, 1031, 1166
BlsI GCNGC 9 cut(s) 27, 142, 336, 339, 342, 851, 854, 1032, 1167
BmcAI AGTACT 2 cut(s) 104, 716
Bme18I GGWCC 2 cut(s) 484, 1190
BmgT120I GGNCC 2 cut(s) 484, 1190
BmiI GGNNCC 1 cut(s) 1192
BmsI GCATC 5 cut(s) 280, 760, 874, 961, 983
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 3 cut(s) 188, 479, 1042
BsaBI GATNNNNATC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 245, 1113
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 176, 206, 378, 408
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 379, 875, 1136
Bse1I ACTGG 2 cut(s) 110, 1202
Bse8I GATNNNNATC 1 cut(s) 240
BseGI GGATG 5 cut(s) 295, 865, 927, 1194, 1198
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 143, 379, 875, 1136
BseMII CTCAG 1 cut(s) 902
BseNI ACTGG 2 cut(s) 110, 1202
BseRI GAGGAG 2 cut(s) 197, 548
BseXI GCAGC 9 cut(s) 37, 152, 327, 346, 349, 836, 839, 1017, 1177
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 2 cut(s) 667, 1176
BslI CCNNNNNNNGG 4 cut(s) 143, 379, 875, 1136
BsmAI GTCTC 3 cut(s) 245, 1113, 1210
BsmFI GGGAC 2 cut(s) 667, 1176
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 245, 1113
Bsp143I GATC 6 cut(s) 33, 199, 235, 241, 491, 831
BspACI CCGC 2 cut(s) 91, 705
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 901
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 1192
BspMAI CTGCAG 1 cut(s) 1167
BspPI GGATC 2 cut(s) 28, 486
BspQI GCTCTTC 1 cut(s) 354
BspTNI GGTCTC 2 cut(s) 245, 1113
BsrI ACTGG 2 cut(s) 110, 1202
BssMI GATC 6 cut(s) 33, 199, 235, 241, 491, 831
BssNAI GTATAC 1 cut(s) 1270
Bst1107I GTATAC 1 cut(s) 1270
Bst4CI ACNGT 3 cut(s) 754, 911, 1159
Bst6I CTCTTC 4 cut(s) 354, 546, 606, 1086
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 210, 676, 774, 888
BstEII GGTNACC 1 cut(s) 892
BstF5I GGATG 5 cut(s) 295, 865, 927, 1194, 1198
BstKTI GATC 6 cut(s) 36, 202, 238, 244, 494, 834
BstMAI GTCTC 3 cut(s) 245, 1113, 1210
BstMBI GATC 6 cut(s) 33, 199, 235, 241, 491, 831
BstMWI GCNNNNNNNGC 4 cut(s) 149, 340, 599, 1148
BstPI GGTNACC 1 cut(s) 892
BstSFI CTRYAG 1 cut(s) 1163
BstV1I GCAGC 9 cut(s) 37, 152, 327, 346, 349, 836, 839, 1017, 1177
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 1270
BsuI GTATCC 1 cut(s) 818
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 5 cut(s) 295, 865, 927, 1194, 1198
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 152, 477
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 2 cut(s) 143, 340
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 2 cut(s) 484, 1190
Csp6I GTAC 5 cut(s) 103, 673, 715, 1160, 1225
CviQI GTAC 5 cut(s) 103, 673, 715, 1160, 1225
DdeI CTNAG 4 cut(s) 210, 676, 774, 888
DpnI GATC 6 cut(s) 35, 201, 237, 243, 493, 833
DpnII GATC 6 cut(s) 33, 199, 235, 241, 491, 831
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 354, 546, 606, 1086
EarI CTCTTC 4 cut(s) 354, 546, 606, 1086
Eco31I GGTCTC 2 cut(s) 245, 1113
Eco47I GGWCC 2 cut(s) 484, 1190
Eco57I CTGAAG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 892
EcoRI GAATTC 1 cut(s) 737
EcoT22I ATGCAT 2 cut(s) 867, 976
FaqI GGGAC 2 cut(s) 667, 1176
FauNDI CATATG 3 cut(s) 699, 990, 1184
FblI GTMKAC 1 cut(s) 1269
Fnu4HI GCNGC 9 cut(s) 26, 141, 335, 338, 341, 850, 853, 1031, 1166
FokI GGATG 5 cut(s) 302, 852, 914, 1181, 1185
Fsp4HI GCNGC 9 cut(s) 26, 141, 335, 338, 341, 850, 853, 1031, 1166
FspBI CTAG 1 cut(s) 1080
GluI GCNGC 9 cut(s) 26, 141, 335, 338, 341, 850, 853, 1031, 1166
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 2 cut(s) 455, 758
HinfI GANTC 3 cut(s) 11, 536, 680
Hpy166II GTNNAC 3 cut(s) 134, 318, 1270
Hpy188I TCNGA 4 cut(s) 727, 970, 1131, 1180
Hpy188III TCNNGA 4 cut(s) 239, 411, 647, 869
Hpy8I GTNNAC 3 cut(s) 134, 318, 1270
HpyAV CCTTC 4 cut(s) 39, 373, 377, 610
HpyCH4III ACNGT 3 cut(s) 754, 911, 1159
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 340, 599, 1148
HpyF3I CTNAG 4 cut(s) 210, 676, 774, 888
Kzo9I GATC 6 cut(s) 33, 199, 235, 241, 491, 831
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 184, 1139
Lsp1109I GCAGC 9 cut(s) 37, 152, 327, 346, 349, 836, 839, 1017, 1177
LweI GCATC 5 cut(s) 280, 760, 874, 961, 983
MaeI CTAG 1 cut(s) 1080
MaeIII GTNAC 4 cut(s) 707, 892, 950, 1048
MalI GATC 6 cut(s) 35, 201, 237, 243, 493, 833
MboI GATC 6 cut(s) 33, 199, 235, 241, 491, 831
MboII GAAGA 8 cut(s) 184, 341, 563, 623, 635, 733, 1049, 1103
MfeI CAATTG 3 cut(s) 231, 528, 809
MflI RGATCY 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 545, 674
MmeI TCCRAC 2 cut(s) 159, 955
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 867, 976
MroXI GAANNNNTTC 1 cut(s) 418
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 1008
MslI CAYNNNNRTG 1 cut(s) 982
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 143, 340
MunI CAATTG 3 cut(s) 231, 528, 809
MwoI GCNNNNNNNGC 4 cut(s) 149, 340, 599, 1148
NdeI CATATG 3 cut(s) 699, 990, 1184
NdeII GATC 6 cut(s) 33, 199, 235, 241, 491, 831
NlaIV GGNNCC 1 cut(s) 1192
NmuCI GTSAC 1 cut(s) 1048
NsiI ATGCAT 2 cut(s) 867, 976
PagI TCATGA 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 9 cut(s) 27, 142, 336, 339, 342, 851, 854, 1032, 1167
PleI GAGTC 2 cut(s) 544, 674
PpsI GAGTC 2 cut(s) 544, 674
PspEI GGTNACC 1 cut(s) 892
PspN4I GGNNCC 1 cut(s) 1192
PspPI GGNCC 2 cut(s) 484, 1190
PstI CTGCAG 1 cut(s) 1167
PstNI CAGNNNCTG 2 cut(s) 143, 340
PsuI RGATCY 1 cut(s) 199
PvuII CAGCTG 2 cut(s) 143, 340
RsaI GTAC 5 cut(s) 104, 674, 716, 1161, 1226
RsaNI GTAC 5 cut(s) 103, 673, 715, 1160, 1225
RseI CAYNNNNRTG 1 cut(s) 982
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 1008
SatI GCNGC 9 cut(s) 26, 141, 335, 338, 341, 850, 853, 1031, 1166
Sau3AI GATC 6 cut(s) 33, 199, 235, 241, 491, 831
Sau96I GGNCC 2 cut(s) 484, 1190
ScaI AGTACT 2 cut(s) 104, 716
SchI GAGTC 2 cut(s) 545, 674
SfaNI GCATC 5 cut(s) 280, 760, 874, 961, 983
SfcI CTRYAG 1 cut(s) 1163
SinI GGWCC 2 cut(s) 484, 1190
SmiMI CAYNNNNRTG 1 cut(s) 982
SmlI CTYRAG 3 cut(s) 203, 458, 1021
SmoI CTYRAG 3 cut(s) 203, 458, 1021
SsiI CCGC 2 cut(s) 91, 705
SspMI CTAG 1 cut(s) 1080
TaaI ACNGT 3 cut(s) 754, 911, 1159
TaqI TCGA 4 cut(s) 32, 45, 275, 539
TatI WGTACW 2 cut(s) 102, 714
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 1008
Tru9I TTAA 1 cut(s) 1008
TscAI CASTG 2 cut(s) 159, 477
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 9 cut(s) 25, 140, 334, 337, 340, 849, 852, 1030, 1165
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 8 cut(s) 76, 138, 311, 392, 434, 750, 1163, 1264
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 159, 477
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 484, 1190
XapI RAATTY 4 cut(s) 16, 506, 627, 737
XmiI GTMKAC 1 cut(s) 1269
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 1 cut(s) 1080
ZrmI AGTACT 2 cut(s) 104, 716
Zsp2I ATGCAT 2 cut(s) 867, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.