MD04G1072100.v1.1

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000154
Physical Location & Seq
Reverse (-)
9817341 .. 9823172
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1072100.v1.1.491

Sequence Viewer

Length: 2046 bp
ATGTACAGAGTCTGCAGAGGGACTGGTTGTACGTATCGTGATATCTTAGCTGGCCTTGATGACGCTGTTATAACTCCAGAAGGTCGTGACTATGTTTTGACACCAAGTTTGGTATCTTTTCATGAATCAGTAAGTGATGTGAGTAGTAGCATGAGAAAGACTCAAGCCTTTGATCACACTCCATTGAGATGGAGGAATCTGGAAGATGTTCTAGCACAATGCAATCTCTGCATTATGGAACCTAAAAAGTTTGAAGAGGCAGCTAAAGATGAATCATGGATGAAGGCTATGAAAGATGAATTATCAATGATTGAGAAGAATGCAACATGGGAGCTAATGAACAGACCAAGTGATAAACCTATAATTGGGGTTAAGTGGGTGTTCAAGACCAAGCTTAATCTTGATGGGACAGTGCAAAAGAATAAGGCAAGGCTGGTAGCCAAGGGGTATGCTCAGAAACTAGGTGTTGATTATAATGAAACGTTTGCACCTGTAGCTAGACTTGATACAATTCGGACTCTAATTGCTTTGGCAGCTCAGAAGAGTTGGAAACTATACCAACTAGATATGAAATTTGCTTTTCTGAATAGAGTACTTGAAGAAGAGGTTTATGTAGAACAACCAGATGGGTTTGTGATCAAGGGAAGTGAAGACAAGGTGTACAATCTTCATAAAAGCTTTGTATGGTCTAAAACAGGCACCAAGGGCCTGTTATGCAAAGATGATGGCAGTGGTTTAGCAAGTGAGGAACAGTATCGAAGAATTATGGGAAGTTTGTTGTATCTAACAGCCACTCGGCCAGATATAATGTATGCCGCAAGTCTTCTAGCCCGATTCATGCACTGTCCTACAAACAAACACTTTGGAACAGCCAAAAGAGTGCTTAGATACATCAAGGGAACATTAGATTATGGTCTGGAGTATGTAAAAGGAAAGAATGCAATGTTAATTAGATTCTGTGATAGTGATTGGGGAAGATCTGTTGATGACAGCAAAAGCACTTCGGGTTATGCATTTTCTTTTGGCAGTGAAGTGTTCTCATGGGCCTCTGTGAAGCAAAATTGTGTAGCACTCTCTACTGCAGAAGCAGAGTATATCAGTGCCTCTGAGGCAACTGTTCAAGTTATTTGGCTTCGGTTTGTTCTTGAAGACTTTGGTGAGTTACAAACTGAAACAACTCCAGTGCATTGTGACAACACTACTGCAATTGCAATCACCAAGAATCCTGTGTTTCATCAGAAAACTAAACACATTGACATGAGGTATCATTTTATCAAAGATGCATTACAAGAAGGCATCATTGATCTAATGTATTGTCCCACAGAAGAACAATTGGCAGATATCTTCACAAAGCCTCTCACCAAAGATCGATTTAATCTTCTCAGAAGCAAACTTGGAGTGAAATCAGCTTTAGACTTAAAGGGGAGTGCGCCATGGATTTTCACAGTCGGAGCAAGTACCACTGACAGAATACTAAAATCACAAGATGAGAAGCTTAACTCCAATGGAACTATAATTGGAGATGCGCTTGCTCCCAGGGTAGCTTCCTTTTCGTCAAGAAGACCAAGCAGACCAGGCCCCGGAATTCTGAAACCTCACATCATTGGACCTGGTGTTGACATCCTAGCTGCATGGCCTGAATCAGTGGACAATGCCACGTTTCCTAATCCTAAGGCAACATTTAACATAATTTATGGTACCTCAATGGCAACTCCTCACCTGAGCGGCATTGCAGCTTTGATCAAGAAATCACACCCTGATTGGTCTCCAGCTGCAATCAAATATGCCACCATGACAACCGCTAATGTACTAAACCTTGCAGGCACACCCATCGTGAATCAAGATCTTACACCTGCGGACGTTTTTGCAATTGGTGGAGGCCATGTCAACCCTACAAAAGAAAATGACCCGGGGCTCATCTTCGACATAAAACCTGAGGATTACTTTCCTTACTTGTGTGGATTGAATTACAATGAGACAGCAATAAAGATCAGCACTCAACAAACAGTGAAATGCTCTGAAGTCGGGGTCATACCAGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

682

Amino Acids

75.8

Weight (kDa)

7.52

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 107 - 227 1.6e-37 Reverse transcriptase (RNA-dependent DNA polymerase)
Peptidase_S8 PF00082 471 - 602 5.6e-18 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 474
AarI CACCTGC 1 cut(s) 1861
Acc36I ACCTGC 1 cut(s) 1861
Acc65I GGTACC 1 cut(s) 1697
AccB1I GGYRCC 2 cut(s) 698, 1697
AccBSI CCGCTC 1 cut(s) 1725
AciI CCGC 4 cut(s) 816, 1725, 1800, 1856
AclI AACGTT 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 2 cut(s) 572, 1584
AcuI CTGAAG 1 cut(s) 2040
AfaI GTAC 7 cut(s) 5, 31, 594, 662, 1459, 1699, 1809
AfiI CCNNNNNNNGG 2 cut(s) 365, 1580
AgsI TTSAA 6 cut(s) 254, 385, 599, 1121, 1148, 1966
AjnI CCWGG 3 cut(s) 1535, 1573, 1609
Alw26I GTCTC 2 cut(s) 1770, 1970
AlwNI CAGNNNCTG 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 1909
AoxI GGCC 7 cut(s) 52, 706, 797, 1044, 1576, 1634, 1879
ApeKI GCWGC 5 cut(s) 260, 533, 1628, 1733, 1772
ApoI RAATTY 2 cut(s) 572, 1584
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
Asp700I GAANNNNTTC 1 cut(s) 207
Asp718I GGTACC 1 cut(s) 1697
AspLEI GCGC 2 cut(s) 1432, 1528
AspS9I GGNCC 4 cut(s) 706, 1044, 1577, 1607
AsuC2I CCSGG 3 cut(s) 1581, 1910, 1911
AsuHPI GGTGA 4 cut(s) 1169, 1207, 1351, 1709
AvaI CYCGRG 1 cut(s) 1909
AvaII GGWCC 1 cut(s) 1607
AxyI CCTNAGG 2 cut(s) 1671, 1935
BanI GGYRCC 2 cut(s) 698, 1697
BanII GRGCYC 1 cut(s) 1917
BbsI GAAGAC 4 cut(s) 657, 815, 1155, 1567
BbvI GCAGC 5 cut(s) 272, 545, 1615, 1745, 1759
BccI CCATC 5 cut(s) 183, 398, 620, 719, 1838
BcgI CGANNNNNNTGC 2 cut(s) 1813, 1847
BciT130I CCWGG 3 cut(s) 1537, 1575, 1611
BclI TGATCA 3 cut(s) 172, 636, 1740
BcnI CCSGG 3 cut(s) 1581, 1910, 1911
BcoDI GTCTC 2 cut(s) 1770, 1970
BfaI CTAG 6 cut(s) 212, 461, 498, 563, 827, 1625
BfmI CTRYAG 3 cut(s) 13, 492, 1080
BfuAI ACCTGC 1 cut(s) 1861
BglI GCCNNNNNGGC 1 cut(s) 1109
BglII AGATCT 2 cut(s) 977, 1843
BisI GCNGC 7 cut(s) 261, 534, 816, 1629, 1726, 1734, 1773
BlsI GCNGC 7 cut(s) 262, 535, 817, 1630, 1727, 1735, 1774
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 6 cut(s) 1537, 1575, 1581, 1611, 1910, 1911
Bme18I GGWCC 1 cut(s) 1607
BmeT110I CYCGRG 1 cut(s) 1909
BmgT120I GGNCC 4 cut(s) 706, 1044, 1577, 1607
BmiI GGNNCC 4 cut(s) 240, 700, 1579, 1699
BmrFI CCNGG 6 cut(s) 1537, 1575, 1581, 1611, 1910, 1911
BmsI GCATC 3 cut(s) 1270, 1305, 1513
BpiI GAAGAC 4 cut(s) 657, 815, 1155, 1567
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpmI CTGGAG 4 cut(s) 60, 938, 1164, 1752
Bpu10I CCTNAGC 1 cut(s) 1721
BpuEI CTTGAG 1 cut(s) 147
BpuMI CCSGG 3 cut(s) 1581, 1910, 1911
Bsa29I ATCGAT 1 cut(s) 1369
BsaAI YACGTR 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 1770
BsaJI CCNNGG 8 cut(s) 441, 702, 1433, 1535, 1536, 1579, 1909, 1910
BsaXI ACNNNNNCTCC 2 cut(s) 1869, 1899
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 1580
Bse1I ACTGG 2 cut(s) 28, 1181
Bse21I CCTNAGG 2 cut(s) 1671, 1935
Bse3DI GCAATG 2 cut(s) 948, 1728
BseBI CCWGG 3 cut(s) 1537, 1575, 1611
BseCI ATCGAT 1 cut(s) 1369
BseDI CCNNGG 8 cut(s) 441, 702, 1433, 1535, 1536, 1579, 1909, 1910
BseGI GGATG 2 cut(s) 285, 1620
BseLI CCNNNNNNNGG 2 cut(s) 365, 1580
BseMI GCAATG 2 cut(s) 948, 1728
BseMII CTCAG 6 cut(s) 467, 551, 1098, 1396, 1712, 1926
BseNI ACTGG 2 cut(s) 28, 1181
BseRI GAGGAG 1 cut(s) 1704
BseXI GCAGC 5 cut(s) 272, 545, 1615, 1745, 1759
BshFI GGCC 7 cut(s) 54, 708, 799, 1046, 1578, 1636, 1881
BshNI GGYRCC 2 cut(s) 698, 1697
BshVI ATCGAT 1 cut(s) 1369
BsiHKCI CYCGRG 1 cut(s) 1909
BsiSI CCGG 2 cut(s) 1581, 1910
BslFI GGGAC 3 cut(s) 34, 421, 1302
BslI CCNNNNNNNGG 2 cut(s) 365, 1580
BsmAI GTCTC 2 cut(s) 1770, 1970
BsmFI GGGAC 3 cut(s) 34, 421, 1302
BsmI GAATGC 2 cut(s) 325, 943
BsnI GGCC 7 cut(s) 54, 708, 799, 1046, 1578, 1636, 1881
Bso31I GGTCTC 1 cut(s) 1770
BsoBI CYCGRG 1 cut(s) 1909
Bsp1286I GDGCHC 1 cut(s) 1917
Bsp1407I TGTACA 2 cut(s) 3, 660
Bsp143I GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
Bsp19I CCATGG 1 cut(s) 1433
BspACI CCGC 4 cut(s) 816, 1725, 1800, 1856
BspANI GGCC 7 cut(s) 54, 708, 799, 1046, 1578, 1636, 1881
BspCNI CTCAG 6 cut(s) 466, 550, 1099, 1395, 1713, 1927
BspDI ATCGAT 1 cut(s) 1369
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 240, 700, 1579, 1699
BspMAI CTGCAG 2 cut(s) 17, 1084
BspMI ACCTGC 1 cut(s) 1861
BspT107I GGYRCC 2 cut(s) 698, 1697
BspTNI GGTCTC 1 cut(s) 1770
BsrBI CCGCTC 1 cut(s) 1725
BsrDI GCAATG 2 cut(s) 948, 1728
BsrGI TGTACA 2 cut(s) 3, 660
BsrI ACTGG 2 cut(s) 28, 1181
BssECI CCNNGG 8 cut(s) 441, 702, 1433, 1535, 1536, 1579, 1909, 1910
BssMI GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
BssT1I CCWWGG 3 cut(s) 441, 702, 1433
Bst2UI CCWGG 3 cut(s) 1537, 1575, 1611
Bst4CI ACNGT 6 cut(s) 412, 753, 845, 1117, 1447, 2008
Bst6I CTCTTC 3 cut(s) 249, 536, 597
BstAPI GCANNNNNTGC 1 cut(s) 228
BstAUI TGTACA 2 cut(s) 3, 660
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 52, 1530, 1822
BstDEI CTNAG 9 cut(s) 46, 453, 537, 884, 1107, 1382, 1671, 1721, 1935
BstDSI CCRYGG 1 cut(s) 1433
BstF5I GGATG 2 cut(s) 285, 1620
BstHHI GCGC 2 cut(s) 1432, 1528
BstKTI GATC 8 cut(s) 175, 639, 980, 1306, 1369, 1743, 1846, 1992
BstMAI GTCTC 2 cut(s) 1770, 1970
BstMBI GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
BstMWI GCNNNNNNNGC 7 cut(s) 228, 494, 533, 705, 714, 1109, 1575
BstNI CCWGG 3 cut(s) 1537, 1575, 1611
BstSCI CCNGG 6 cut(s) 1535, 1573, 1579, 1609, 1908, 1909
BstSFI CTRYAG 3 cut(s) 13, 492, 1080
BstSNI TACGTA 1 cut(s) 33
BstV1I GCAGC 5 cut(s) 272, 545, 1615, 1745, 1759
BstV2I GAAGAC 4 cut(s) 657, 815, 1155, 1567
BstX2I RGATCY 2 cut(s) 977, 1843
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 2 cut(s) 977, 1843
Bsu15I ATCGAT 1 cut(s) 1369
Bsu36I CCTNAGG 2 cut(s) 1671, 1935
BsuRI GGCC 7 cut(s) 54, 708, 799, 1046, 1578, 1636, 1881
BsuTUI ATCGAT 1 cut(s) 1369
BtgI CCRYGG 1 cut(s) 1433
BtsCI GGATG 2 cut(s) 285, 1620
BtsI GCAGTG 2 cut(s) 736, 1033
BtsIMutI CAGTG 9 cut(s) 417, 736, 841, 1033, 1105, 1188, 1461, 1650, 2013
BveI ACCTGC 1 cut(s) 1861
Cac8I GCNNGC 3 cut(s) 52, 1530, 1822
CaiI CAGNNNCTG 1 cut(s) 12
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 1432, 1528
Cfr13I GGNCC 4 cut(s) 706, 1044, 1577, 1607
Cfr9I CCCGGG 1 cut(s) 1909
ClaI ATCGAT 1 cut(s) 1369
CseI GACGC 1 cut(s) 71
CsiI ACCWGGT 1 cut(s) 1609
Csp6I GTAC 7 cut(s) 4, 30, 593, 661, 1458, 1698, 1808
CviQI GTAC 7 cut(s) 4, 30, 593, 661, 1458, 1698, 1808
DdeI CTNAG 9 cut(s) 46, 453, 537, 884, 1107, 1382, 1671, 1721, 1935
DpnI GATC 8 cut(s) 174, 638, 979, 1305, 1368, 1742, 1845, 1991
DpnII GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 3 cut(s) 249, 536, 597
EarI CTCTTC 3 cut(s) 249, 536, 597
Eco105I TACGTA 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 441, 702, 1433
Eco24I GRGCYC 1 cut(s) 1917
Eco31I GGTCTC 1 cut(s) 1770
Eco32I GATATC 2 cut(s) 43, 1342
Eco47I GGWCC 1 cut(s) 1607
Eco57I CTGAAG 1 cut(s) 2040
Eco81I CCTNAGG 2 cut(s) 1671, 1935
Eco88I CYCGRG 1 cut(s) 1909
EcoO109I RGGNCCY 2 cut(s) 706, 1577
EcoRI GAATTC 1 cut(s) 1584
EcoRII CCWGG 3 cut(s) 1535, 1573, 1609
EcoRV GATATC 2 cut(s) 43, 1342
EcoT14I CCWWGG 3 cut(s) 441, 702, 1433
EcoT22I ATGCAT 2 cut(s) 1015, 1285
EcoT38I GRGCYC 1 cut(s) 1917
ErhI CCWWGG 3 cut(s) 441, 702, 1433
FaqI GGGAC 3 cut(s) 34, 421, 1302
FbaI TGATCA 3 cut(s) 172, 636, 1740
Fnu4HI GCNGC 7 cut(s) 261, 534, 816, 1629, 1726, 1734, 1773
FokI GGATG 2 cut(s) 292, 1607
FriOI GRGCYC 1 cut(s) 1917
Fsp4HI GCNGC 7 cut(s) 261, 534, 816, 1629, 1726, 1734, 1773
FspBI CTAG 6 cut(s) 212, 461, 498, 563, 827, 1625
GlaI GCGC 2 cut(s) 1431, 1527
GluI GCNGC 7 cut(s) 261, 534, 816, 1629, 1726, 1734, 1773
GsuI CTGGAG 4 cut(s) 60, 938, 1164, 1752
HaeIII GGCC 7 cut(s) 54, 708, 799, 1046, 1578, 1636, 1881
HapII CCGG 2 cut(s) 1581, 1910
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 1432, 1528
Hin6I GCGC 2 cut(s) 1430, 1526
HinP1I GCGC 2 cut(s) 1430, 1526
HincII GTYRAC 2 cut(s) 1618, 1888
HindII GTYRAC 2 cut(s) 1618, 1888
HindIII AAGCTT 3 cut(s) 392, 676, 1493
HpaII CCGG 2 cut(s) 1581, 1910
HphI GGTGA 4 cut(s) 1169, 1207, 1351, 1709
Hpy166II GTNNAC 4 cut(s) 661, 1618, 1648, 1888
Hpy8I GTNNAC 4 cut(s) 661, 1618, 1648, 1888
HpyAV CCTTC 3 cut(s) 74, 277, 1286
HpyCH4III ACNGT 6 cut(s) 412, 753, 845, 1117, 1447, 2008
HpyCH4IV ACGT 4 cut(s) 32, 482, 1658, 1860
HpyF10VI GCNNNNNNNGC 7 cut(s) 228, 494, 533, 705, 714, 1109, 1575
HpyF3I CTNAG 9 cut(s) 46, 453, 537, 884, 1107, 1382, 1671, 1721, 1935
HpySE526I ACGT 4 cut(s) 32, 482, 1658, 1860
HspAI GCGC 2 cut(s) 1430, 1526
KpnI GGTACC 1 cut(s) 1701
Ksp22I TGATCA 3 cut(s) 172, 636, 1740
Kzo9I GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
LmnI GCTCC 3 cut(s) 331, 1451, 1537
Lsp1109I GCAGC 5 cut(s) 272, 545, 1615, 1745, 1759
LweI GCATC 3 cut(s) 1270, 1305, 1513
MabI ACCWGGT 1 cut(s) 1609
MaeI CTAG 6 cut(s) 212, 461, 498, 563, 827, 1625
MaeII ACGT 4 cut(s) 32, 482, 1658, 1860
MaeIII GTNAC 3 cut(s) 86, 1161, 1190
MalI GATC 8 cut(s) 174, 638, 979, 1305, 1368, 1742, 1845, 1991
MbiI CCGCTC 1 cut(s) 1725
MboI GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
MfeI CAATTG 3 cut(s) 1206, 1331, 1869
MflI RGATCY 2 cut(s) 977, 1843
MhlI GDGCHC 1 cut(s) 1917
MlyI GAGTC 3 cut(s) 18, 154, 511
MmeI TCCRAC 2 cut(s) 527, 1429
Mph1103I ATGCAT 2 cut(s) 1015, 1285
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 7 cut(s) 372, 396, 947, 1374, 1418, 1497, 1683
MslI CAYNNNNRTG 2 cut(s) 187, 1256
MspA1I CMGCKG 1 cut(s) 1772
MspI CCGG 2 cut(s) 1581, 1910
MspR9I CCNGG 6 cut(s) 1537, 1575, 1581, 1611, 1910, 1911
MunI CAATTG 3 cut(s) 1206, 1331, 1869
Mva1269I GAATGC 2 cut(s) 325, 943
MvaI CCWGG 3 cut(s) 1537, 1575, 1611
MwoI GCNNNNNNNGC 7 cut(s) 228, 494, 533, 705, 714, 1109, 1575
NciI CCSGG 3 cut(s) 1581, 1910, 1911
NcoI CCATGG 1 cut(s) 1433
NdeII GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
NlaIV GGNNCC 4 cut(s) 240, 700, 1579, 1699
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 2 cut(s) 86, 1190
NsiI ATGCAT 2 cut(s) 1015, 1285
PagI TCATGA 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 1861
PasI CCCWGGG 1 cut(s) 1536
PctI GAATGC 2 cut(s) 325, 943
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 8 cut(s) 125, 196, 272, 834, 954, 1222, 1640, 1837
PkrI GCNGC 7 cut(s) 262, 535, 817, 1630, 1727, 1735, 1774
PleI GAGTC 3 cut(s) 17, 154, 511
PpsI GAGTC 3 cut(s) 17, 154, 511
Ppu21I YACGTR 1 cut(s) 33
PsiI TTATAA 2 cut(s) 71, 474
Psp1406I AACGTT 1 cut(s) 482
Psp6I CCWGG 3 cut(s) 1535, 1573, 1609
PspGI CCWGG 3 cut(s) 1535, 1573, 1609
PspN4I GGNNCC 4 cut(s) 240, 700, 1579, 1699
PspPI GGNCC 4 cut(s) 706, 1044, 1577, 1607
PstI CTGCAG 2 cut(s) 17, 1084
PstNI CAGNNNCTG 1 cut(s) 12
PsuI RGATCY 2 cut(s) 977, 1843
PvuII CAGCTG 1 cut(s) 1772
RsaI GTAC 7 cut(s) 5, 31, 594, 662, 1459, 1699, 1809
RsaNI GTAC 7 cut(s) 4, 30, 593, 661, 1458, 1698, 1808
RseI CAYNNNNRTG 2 cut(s) 187, 1256
SaqAI TTAA 7 cut(s) 372, 396, 947, 1374, 1418, 1497, 1683
SatI GCNGC 7 cut(s) 261, 534, 816, 1629, 1726, 1734, 1773
Sau3AI GATC 8 cut(s) 172, 636, 977, 1303, 1366, 1740, 1843, 1989
Sau96I GGNCC 4 cut(s) 706, 1044, 1577, 1607
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 3 cut(s) 18, 154, 511
ScrFI CCNGG 6 cut(s) 1537, 1575, 1581, 1611, 1910, 1911
SduI GDGCHC 1 cut(s) 1917
SexAI ACCWGGT 1 cut(s) 1609
SfaNI GCATC 3 cut(s) 1270, 1305, 1513
SfcI CTRYAG 3 cut(s) 13, 492, 1080
SinI GGWCC 1 cut(s) 1607
SmaI CCCGGG 1 cut(s) 1911
SmiMI CAYNNNNRTG 2 cut(s) 187, 1256
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SnaBI TACGTA 1 cut(s) 33
SsiI CCGC 4 cut(s) 816, 1725, 1800, 1856
SspMI CTAG 6 cut(s) 212, 461, 498, 563, 827, 1625
StyD4I CCNGG 6 cut(s) 1535, 1573, 1579, 1609, 1908, 1909
StyI CCWWGG 3 cut(s) 441, 702, 1433
TaaI ACNGT 6 cut(s) 412, 753, 845, 1117, 1447, 2008
TaiI ACGT 4 cut(s) 35, 485, 1661, 1863
TaqI TCGA 3 cut(s) 757, 1369, 1923
TatI WGTACW 4 cut(s) 3, 592, 660, 1807
TauI GCSGC 2 cut(s) 818, 1728
TfiI GAWTC 8 cut(s) 125, 196, 272, 834, 954, 1222, 1640, 1837
Tru1I TTAA 7 cut(s) 372, 396, 947, 1374, 1418, 1497, 1683
Tru9I TTAA 7 cut(s) 372, 396, 947, 1374, 1418, 1497, 1683
TscAI CASTG 9 cut(s) 417, 736, 848, 1033, 1105, 1188, 1468, 1650, 2013
TseFI GTSAC 2 cut(s) 86, 1190
TseI GCWGC 5 cut(s) 260, 533, 1628, 1733, 1772
Tsp45I GTSAC 2 cut(s) 86, 1190
TspMI CCCGGG 1 cut(s) 1909
TspRI CASTG 9 cut(s) 417, 736, 848, 1033, 1105, 1188, 1468, 1650, 2013
VpaK11BI GGWCC 1 cut(s) 1607
XapI RAATTY 2 cut(s) 572, 1584
XmaI CCCGGG 1 cut(s) 1909
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 6 cut(s) 212, 461, 498, 563, 827, 1625
ZrmI AGTACT 1 cut(s) 594
Zsp2I ATGCAT 2 cut(s) 1015, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.