MD15G1058600.v1.1

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000154
Physical Location & Seq
Forward (+)
3920902 .. 3924714
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1058600.v1.1.491

Sequence Viewer

Length: 2289 bp
ATGGGGCTTTTCGAAAACAGGGGACACGGCGTTCATTTCTCTCTGTTTCTGGTGGCAATGCTGTTTACTCTGAGAGTCTACGGCGTCTTGTGCTCTGATAGCTGTTGGGTTCATCTGGGTTCCGGTAGTTTGATGGGTTTTCTCTGGATTCAAAGCGGGTGGCTCGGCCACGATTCTGGTCACTACCAGATCATCAGCAGCAAAAGGGTCAACAGATTCGCCCAGATCCTCACCGGAAACTGCCTTGCCGGCATCAGCATTGCGTGCTGGAAGCGCAACCACAACGCCCACCACATTGCTATCAACTTTAAATTGGGGAACAACAGTAGGATGAATGTGGTTGGCAAGGGAAGTGTCACGTTGTTTTTAAATGGAATCAATCATGTTGTCAATGAAGTGTACTATGTTCCAGAGCTCAAAAACAATCTCTTGAGCATAGGACAACTTCAAGAAAAGGGCTTGGCTATGTTAATTAAAGAAGGACCTCAGACTCCAGTCTCTACAAGTGCTCCACCAGAAAGGTGTCTTCACACAAGCTCGCAGGATCTCTTTTATCTTTGGCATCGAAGACATGGTCACCTAAGCTACAAGGGATTAAGAACGTTACAACAGAAGATGATGGTTTGTGGACTTCCTCAGCTTCAAACCTCAAATATCACATGCACAGACCGCATTCAAGGTAAACAACATCGTAATGACATGCCAATAAGAAGTACGTGGAGAGCAAGTCAGCCTTTGGAGCTCATTCATGCAGACATATGTGGGCCAATCTCTCCCATATCAAATAGTGGAAGGAGGTATACTTTATGCTTTATTGATGATTTTAGTCGTAAAACATGGGTGTACTTGTTGACATCAAAGAGTGAGGCACTGCATTGCTTCCAGTTTTTCAAAAGAATGGTGGAAAAGGAGAAAGGGCTTAGTGTCAAGTGTCTACGGACAGATAGAGGGGGTGAATTCACCTCAACTGAATTCACTAATTTTTGCAAAGAAAATGGAATCAAGAGGCAGTTAACCACTGCCTACACGCCGCAACAAAACGGGGTGGCTGAAAGGAAAAATCGAACTGTCATGAATATGGTTCGTTCTATGTTGTCTGATAAGAAGCTCCCAAAAATGTTTTGGCCAGAGGCGGTGAACTGGACTATCTATGTTCTGAATAGATGTCCCACATCATCAGTGAAGGATATCACTCCACAAGAGGCTTGGAGTGGAGTAAAACCCTCAGTCGAGCACTTCCGTGTCTTTGGAAGCCTAGCACATGTCCATGTTCCAGATGTCAAGCGAGGTAAATTAGATGATAAAAGTTTTCCTTGTATTTTATTGGGAGTTAGTGAGGAGTCCAAGGGATATAGATTGTTTGATCCTATAGCCAAGAAAATTGTTGTGAGCATGGATGTTATTTTTGAGGAAGAAAAACAGTGGGATTGGGATGTGAGTTATGAGGGAAAGATCATGTTAGATTTAGAATGGGGAGAAAATGAAGAAAACAGTGAGGGAGAAGAAATGGTGAGTGAAAATGAAGATGAAAATGGCAGTGGGGCTAGAGAAGAAAGAAATGTGGGTGAGAGCAGTGAAGACACACATGGTTGTGAAGAGAGAAGTTCTAATGAACTTGGCGAGGATGAAGGGAGGGTTTATGAAGGAAGAGTTAGACGTCCTCCTTCTTACTCAAGTGATTATGTCACTGGAGAAGGGCTAAGTGACGACGAGGTACACATGGTTCAAATCGTGGCAACCGAATATCCTCTCTATTTTGAAGAAGCAGTGAAAGAAGAGAAATGGAAGCAAGCTAGCCTCGAACACGATCCGAATCTCCAGCACATGCCGTTTTTCGCTGTGAATTCGAAACTGTTCACCTCCCTCACCTCTTATTACTACGACAGGAAGATGAGTTTCGATGCTTTTACCAGGTTCTTGGTTAGTTACCAGCACTGGACTTTTTACCCTGTCATGTGTCTTGCTAGGATTAACCTTTTTGCTCAGTCATTTTTACTTTTATCTTCCAAAAGATTGAGGAGAGTAATGTTCGTTGTGGCAAGCTTTTCTGTCACTGGAGTCCAACATGTTCAGTTCTGCTTGAACCATTTCTCTTCAAGTGTTTATGTCGGTACGCCAACGGGGAACGATTGGTGCGAAACCCAGACGAATGGTTCGCTCAATATAGTCTGCCCGTCATGGATGGACTGGTTCCACGGCGGATTGCAGTTTCAGATCGAGCACCATTTGTTTCCGCGGTTGCCCCGACGCAACCTTAGGAAAATTGCCCCCCTTGTCAAGGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

763

Amino Acids

87.28

Weight (kDa)

7.82

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 36 - 100 2.6e-07 Fatty acid desaturase
Pol_BBD PF22936 102 - 153 4e-13 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 168 - 229 1.7e-09 GAG-pre-integrase domain
rve PF00665 243 - 344 2.2e-18 Integrase core domain
SH3_retrovirus PF25597 418 - 480 6.8e-24 Retroviral polymerase SH3-like domain
FA_desaturase PF00487 626 - 761 1.3e-14 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1660
AccI GTMKAC 3 cut(s) 78, 800, 934
AccII CGCG 1 cut(s) 2236
AciI CCGC 7 cut(s) 156, 670, 1031, 1133, 2199, 2234, 2236
AclI AACGTT 1 cut(s) 602
AclWI GGATC 4 cut(s) 220, 552, 1358, 1802
AcoI YGGCCR 2 cut(s) 166, 1124
AcsI RAATTY 3 cut(s) 956, 971, 1843
AcyI GRCGYC 2 cut(s) 84, 1657
AfaI GTAC 5 cut(s) 401, 715, 845, 1716, 2113
AfiI CCNNNNNNNGG 1 cut(s) 2278
AflIII ACRYGT 2 cut(s) 1261, 2065
AgsI TTSAA 9 cut(s) 152, 449, 644, 677, 892, 1727, 1760, 2083, 2097
AjnI CCWGG 1 cut(s) 1910
AleI CACNNNNGTG 1 cut(s) 1239
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 9 cut(s) 102, 415, 537, 585, 640, 742, 1108, 1793, 2043
AluI AGCT 9 cut(s) 102, 415, 537, 585, 640, 742, 1108, 1793, 2043
Alw21I GWGCWC 6 cut(s) 95, 417, 511, 744, 1236, 2223
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 4 cut(s) 220, 552, 1358, 1802
AoxI GGCC 3 cut(s) 166, 764, 1124
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 3 cut(s) 956, 971, 1843
ArsI GACNNNNNNTTYG 4 cut(s) 559, 591, 2137, 2169
Asp700I GAANNNNTTC 2 cut(s) 1853, 2087
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 482, 764
AsuHPI GGTGA 9 cut(s) 223, 569, 952, 965, 1147, 1522, 1577, 1849, 1858
AsuII TTCGAA 2 cut(s) 12, 1847
AsuNHI GCTAGC 1 cut(s) 1793
AvaII GGWCC 1 cut(s) 482
AxyI CCTNAGG 1 cut(s) 2255
BalI TGGCCA 1 cut(s) 1126
BanII GRGCYC 2 cut(s) 417, 744
BarI GAAGNNNNNNTAC 2 cut(s) 784, 816
BbsI GAAGAC 3 cut(s) 518, 574, 1584
Bbv12I GWGCWC 6 cut(s) 95, 417, 511, 744, 1236, 2223
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 210
BccI CCATC 3 cut(s) 127, 613, 2176
BceAI ACGGC 4 cut(s) 43, 97, 1813, 2212
BciT130I CCWGG 1 cut(s) 1912
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 4 cut(s) 1256, 1545, 1794, 1965
BfmI CTRYAG 1 cut(s) 1368
BglI GCCNNNNNGGC 1 cut(s) 249
BisI GCNGC 2 cut(s) 199, 1031
BlsI GCNGC 2 cut(s) 200, 1032
Bme1390I CCNGG 1 cut(s) 1912
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 482, 764
BmiI GGNNCC 2 cut(s) 121, 2192
BmrFI CCNGG 1 cut(s) 1912
BmsI GCATC 3 cut(s) 261, 571, 1891
BmtI GCTAGC 1 cut(s) 1797
BoxI GACNNNNGTC 1 cut(s) 494
BpiI GAAGAC 3 cut(s) 518, 574, 1584
BpmI CTGGAG 4 cut(s) 477, 1710, 1802, 2076
Bpu10I CCTNAGC 2 cut(s) 581, 636
Bpu14I TTCGAA 2 cut(s) 12, 1847
BpuEI CTTGAG 2 cut(s) 451, 1657
BsaAI YACGTR 1 cut(s) 717
BsaBI GATNNNNATC 1 cut(s) 1812
BsaHI GRCGYC 2 cut(s) 84, 1657
BsaJI CCNNGG 3 cut(s) 1344, 2194, 2234
BsaWI WCCGGW 2 cut(s) 122, 233
BsaXI ACNNNNNCTCC 4 cut(s) 493, 523, 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 2278
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 7 cut(s) 494, 883, 1145, 1693, 1940, 2059, 2192
Bse21I CCTNAGG 1 cut(s) 2255
Bse3DI GCAATG 4 cut(s) 63, 258, 294, 874
Bse8I GATNNNNATC 1 cut(s) 1812
BseBI CCWGG 1 cut(s) 1912
BseDI CCNNGG 3 cut(s) 1344, 2194, 2234
BseGI GGATG 5 cut(s) 336, 1402, 1438, 1630, 2187
BseJI GATNNNNATC 1 cut(s) 1812
BseLI CCNNNNNNNGG 1 cut(s) 2278
BseMI GCAATG 4 cut(s) 63, 258, 294, 874
BseMII CTCAG 5 cut(s) 62, 500, 650, 1239, 1997
BseNI ACTGG 7 cut(s) 494, 883, 1145, 1693, 1940, 2059, 2192
BseRI GAGGAG 2 cut(s) 1352, 2032
BseXI GCAGC 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 2236
BshFI GGCC 3 cut(s) 168, 766, 1126
BsiHKAI GWGCWC 6 cut(s) 95, 417, 511, 744, 1236, 2223
BsiSI CCGG 3 cut(s) 123, 234, 249
BslFI GGGAC 2 cut(s) 36, 1152
BslI CCNNNNNNNGG 1 cut(s) 2278
BsmAI GTCTC 1 cut(s) 502
BsmFI GGGAC 2 cut(s) 36, 1152
BsmI GAATGC 2 cut(s) 672, 2282
BsnI GGCC 3 cut(s) 168, 766, 1126
Bsp119I TTCGAA 2 cut(s) 12, 1847
Bsp1286I GDGCHC 6 cut(s) 95, 417, 511, 744, 1236, 2223
Bsp143I GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
BspACI CCGC 7 cut(s) 156, 670, 1031, 1133, 2199, 2234, 2236
BspANI GGCC 3 cut(s) 168, 766, 1126
BspCNI CTCAG 5 cut(s) 63, 499, 649, 1238, 1996
BspFNI CGCG 1 cut(s) 2236
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 2 cut(s) 121, 2192
BspOI GCTAGC 1 cut(s) 1797
BspPI GGATC 4 cut(s) 220, 552, 1358, 1802
BspT104I TTCGAA 2 cut(s) 12, 1847
BsrDI GCAATG 4 cut(s) 63, 258, 294, 874
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 7 cut(s) 494, 883, 1145, 1693, 1940, 2059, 2192
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 1344, 2194, 2234
BssMI GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
BssNAI GTATAC 1 cut(s) 801
BssNI GRCGYC 2 cut(s) 84, 1657
BssT1I CCWWGG 1 cut(s) 1344
Bst1107I GTATAC 1 cut(s) 801
Bst2UI CCWGG 1 cut(s) 1912
Bst4CI ACNGT 5 cut(s) 326, 1069, 1422, 1493, 1854
Bst6I CTCTTC 4 cut(s) 1590, 1642, 1770, 2098
BstACI GRCGYC 2 cut(s) 84, 1657
BstAPI GCANNNNNTGC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 717
BstBI TTCGAA 2 cut(s) 12, 1847
BstC8I GCNNGC 6 cut(s) 250, 265, 539, 1791, 1795, 2041
BstDEI CTNAG 9 cut(s) 71, 486, 581, 636, 920, 1225, 1700, 1983, 2255
BstDSI CCRYGG 2 cut(s) 2194, 2234
BstEII GGTNACC 1 cut(s) 575
BstENI CCTNNNNNAGG 1 cut(s) 2276
BstF5I GGATG 5 cut(s) 336, 1402, 1438, 1630, 2187
BstFNI CGCG 1 cut(s) 2236
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 7 cut(s) 192, 228, 547, 1366, 1455, 1810, 2217
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
BstMWI GCNNNNNNNGC 7 cut(s) 90, 99, 249, 264, 273, 669, 739
BstNI CCWGG 1 cut(s) 1912
BstNSI RCATGY 5 cut(s) 663, 703, 1265, 1828, 2069
BstPAI GACNNNNGTC 1 cut(s) 494
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 1910
BstSFI CTRYAG 1 cut(s) 1368
BstUI CGCG 1 cut(s) 2236
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 3 cut(s) 518, 574, 1584
BstX2I RGATCY 2 cut(s) 225, 544
BstXI CCANNNNNNTGG 3 cut(s) 176, 1918, 2150
BstYI RGATCY 2 cut(s) 225, 544
BstZ17I GTATAC 1 cut(s) 801
Bsu36I CCTNAGG 1 cut(s) 2255
BsuRI GGCC 3 cut(s) 168, 766, 1126
BtgI CCRYGG 2 cut(s) 2194, 2234
BtsCI GGATG 5 cut(s) 336, 1402, 1438, 1630, 2187
BtsI GCAGTG 5 cut(s) 869, 1017, 1543, 1579, 1773
Cac8I GCNNGC 6 cut(s) 250, 265, 539, 1791, 1795, 2041
CciI TCATGA 1 cut(s) 1071
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 482, 764
Cfr42I CCGCGG 1 cut(s) 2237
CseI GACGC 2 cut(s) 73, 2256
CsiI ACCWGGT 1 cut(s) 1910
Csp6I GTAC 5 cut(s) 400, 714, 844, 1715, 2112
CspCI CAANNNNNGTGG 2 cut(s) 140, 175
CviQI GTAC 5 cut(s) 400, 714, 844, 1715, 2112
DdeI CTNAG 9 cut(s) 71, 486, 581, 636, 920, 1225, 1700, 1983, 2255
DpnI GATC 7 cut(s) 191, 227, 546, 1365, 1454, 1809, 2216
DpnII GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
DraI TTTAAA 2 cut(s) 310, 369
EaeI YGGCCR 2 cut(s) 166, 1124
Eam1104I CTCTTC 4 cut(s) 1590, 1642, 1770, 2098
EarI CTCTTC 4 cut(s) 1590, 1642, 1770, 2098
EciI GGCGGA 1 cut(s) 2214
Ecl136II GAGCTC 2 cut(s) 415, 742
Eco130I CCWWGG 1 cut(s) 1344
Eco24I GRGCYC 2 cut(s) 417, 744
Eco32I GATATC 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 2 cut(s) 415, 742
Eco81I CCTNAGG 1 cut(s) 2255
Eco91I GGTNACC 1 cut(s) 575
EcoICRI GAGCTC 2 cut(s) 415, 742
EcoNI CCTNNNNNAGG 1 cut(s) 2276
EcoO109I RGGNCCY 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 575
EcoRI GAATTC 3 cut(s) 956, 971, 1843
EcoRII CCWGG 1 cut(s) 1910
EcoRV GATATC 1 cut(s) 1189
EcoT14I CCWWGG 1 cut(s) 1344
EcoT38I GRGCYC 2 cut(s) 417, 744
ErhI CCWWGG 1 cut(s) 1344
FalI AAGNNNNNCTT 4 cut(s) 718, 750, 1297, 1329
FaqI GGGAC 2 cut(s) 36, 1152
FauI CCCGC 1 cut(s) 149
FauNDI CATATG 1 cut(s) 758
FblI GTMKAC 3 cut(s) 78, 800, 934
Fnu4HI GCNGC 2 cut(s) 199, 1031
FokI GGATG 5 cut(s) 343, 1409, 1445, 1637, 2194
FriOI GRGCYC 2 cut(s) 417, 744
Fsp4HI GCNGC 2 cut(s) 199, 1031
FspBI CTAG 4 cut(s) 1256, 1545, 1794, 1965
GlaI GCGC 1 cut(s) 275
GluI GCNGC 2 cut(s) 199, 1031
GsuI CTGGAG 4 cut(s) 477, 1710, 1802, 2076
HaeIII GGCC 3 cut(s) 168, 766, 1126
HapII CCGG 3 cut(s) 123, 234, 249
HgaI GACGC 2 cut(s) 73, 2256
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 2 cut(s) 84, 1657
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 3 cut(s) 211, 852, 1014
HindII GTYRAC 3 cut(s) 211, 852, 1014
HindIII AAGCTT 1 cut(s) 2041
HpaI GTTAAC 1 cut(s) 1014
HpaII CCGG 3 cut(s) 123, 234, 249
HphI GGTGA 9 cut(s) 223, 569, 952, 965, 1147, 1522, 1577, 1849, 1858
Hpy188I TCNGA 8 cut(s) 72, 97, 489, 1099, 1158, 1812, 2214, 2288
Hpy188III TCNNGA 7 cut(s) 145, 410, 430, 449, 1003, 1072, 1274
Hpy99I CGWCG 2 cut(s) 1712, 2250
HpyAV CCTTC 7 cut(s) 473, 786, 1177, 1622, 1637, 1674, 1688
HpyCH4III ACNGT 5 cut(s) 326, 1069, 1422, 1493, 1854
HpyCH4IV ACGT 4 cut(s) 359, 602, 716, 1657
HpyCH4V TGCA 5 cut(s) 663, 752, 874, 987, 2206
HpyF10VI GCNNNNNNNGC 7 cut(s) 90, 99, 249, 264, 273, 669, 739
HpyF3I CTNAG 9 cut(s) 71, 486, 581, 636, 920, 1225, 1700, 1983, 2255
HpySE526I ACGT 4 cut(s) 359, 602, 716, 1657
Hsp92I GRCGYC 2 cut(s) 84, 1657
HspAI GCGC 1 cut(s) 274
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
KspAI GTTAAC 1 cut(s) 1014
KspI CCGCGG 1 cut(s) 2237
Kzo9I GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
LmnI GCTCC 3 cut(s) 514, 739, 1113
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 3 cut(s) 261, 571, 1891
MabI ACCWGGT 1 cut(s) 1910
MaeI CTAG 4 cut(s) 1256, 1545, 1794, 1965
MaeII ACGT 4 cut(s) 359, 602, 716, 1657
MaeIII GTNAC 8 cut(s) 179, 355, 575, 603, 1684, 1703, 1925, 2050
MalI GATC 7 cut(s) 191, 227, 546, 1365, 1454, 1809, 2216
MboI GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
MflI RGATCY 2 cut(s) 225, 544
MhlI GDGCHC 6 cut(s) 95, 417, 511, 744, 1236, 2223
MlsI TGGCCA 1 cut(s) 1126
MluCI AATT 9 cut(s) 311, 471, 956, 971, 979, 1292, 1380, 1843, 2262
MluNI TGGCCA 1 cut(s) 1126
MlyI GAGTC 4 cut(s) 84, 484, 1349, 2067
MmeI TCCRAC 1 cut(s) 2086
Mox20I TGGCCA 1 cut(s) 1126
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 2 cut(s) 1853, 2087
MscI TGGCCA 1 cut(s) 1126
MseI TTAA 7 cut(s) 309, 368, 470, 474, 596, 1013, 1971
MslI CAYNNNNRTG 5 cut(s) 693, 1076, 1239, 1266, 1590
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 1 cut(s) 2236
MspI CCGG 3 cut(s) 123, 234, 249
MspR9I CCNGG 1 cut(s) 1912
Mva1269I GAATGC 2 cut(s) 672, 2282
MvaI CCWGG 1 cut(s) 1912
MvnI CGCG 1 cut(s) 2236
MwoI GCNNNNNNNGC 7 cut(s) 90, 99, 249, 264, 273, 669, 739
NaeI GCCGGC 1 cut(s) 250
NdeI CATATG 1 cut(s) 758
NdeII GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
NgoMIV GCCGGC 1 cut(s) 248
NheI GCTAGC 1 cut(s) 1793
NlaIV GGNNCC 2 cut(s) 121, 2192
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 6 cut(s) 179, 355, 575, 1684, 1703, 2050
NspI RCATGY 5 cut(s) 663, 703, 1265, 1828, 2069
NspV TTCGAA 2 cut(s) 12, 1847
OliI CACNNNNGTG 1 cut(s) 1239
PacI TTAATTAA 1 cut(s) 474
PagI TCATGA 1 cut(s) 1071
PciI ACATGT 2 cut(s) 1261, 2065
PcsI WCGNNNNNNNCGW 2 cut(s) 1737, 2133
PctI GAATGC 2 cut(s) 672, 2282
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 2 cut(s) 1853, 2087
PfeI GAWTC 6 cut(s) 148, 173, 216, 375, 999, 1813
PflFI GACNNNGTC 1 cut(s) 573
PkrI GCNGC 2 cut(s) 200, 1032
PleI GAGTC 4 cut(s) 83, 484, 1348, 2066
PpsI GAGTC 4 cut(s) 83, 484, 1348, 2066
Ppu21I YACGTR 1 cut(s) 717
PpuMI RGGWCCY 1 cut(s) 482
PscI ACATGT 2 cut(s) 1261, 2065
PshAI GACNNNNGTC 1 cut(s) 494
Psp124BI GAGCTC 2 cut(s) 417, 744
Psp1406I AACGTT 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 1910
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 1 cut(s) 1910
PspN4I GGNNCC 2 cut(s) 121, 2192
PspPI GGNCC 2 cut(s) 482, 764
PspPPI RGGWCCY 1 cut(s) 482
PsrI GAACNNNNNNTAC 2 cut(s) 1707, 1739
PsuI RGATCY 2 cut(s) 225, 544
PsyI GACNNNGTC 1 cut(s) 573
RsaI GTAC 5 cut(s) 401, 715, 845, 1716, 2113
RsaNI GTAC 5 cut(s) 400, 714, 844, 1715, 2112
RseI CAYNNNNRTG 5 cut(s) 693, 1076, 1239, 1266, 1590
SacI GAGCTC 2 cut(s) 417, 744
SacII CCGCGG 1 cut(s) 2237
SaqAI TTAA 7 cut(s) 309, 368, 470, 474, 596, 1013, 1971
SatI GCNGC 2 cut(s) 199, 1031
Sau3AI GATC 7 cut(s) 189, 225, 544, 1363, 1452, 1807, 2214
Sau96I GGNCC 2 cut(s) 482, 764
SchI GAGTC 4 cut(s) 84, 484, 1349, 2067
ScrFI CCNGG 1 cut(s) 1912
SduI GDGCHC 6 cut(s) 95, 417, 511, 744, 1236, 2223
SexAI ACCWGGT 1 cut(s) 1910
SfaNI GCATC 3 cut(s) 261, 571, 1891
SfcI CTRYAG 1 cut(s) 1368
Sfr303I CCGCGG 1 cut(s) 2237
SfuI TTCGAA 2 cut(s) 12, 1847
SgrBI CCGCGG 1 cut(s) 2237
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 5 cut(s) 693, 1076, 1239, 1266, 1590
SmlI CTYRAG 2 cut(s) 430, 1672
SmoI CTYRAG 2 cut(s) 430, 1672
Sse9I AATT 9 cut(s) 311, 471, 956, 971, 979, 1292, 1380, 1843, 2262
SsiI CCGC 7 cut(s) 156, 670, 1031, 1133, 2199, 2234, 2236
SspMI CTAG 4 cut(s) 1256, 1545, 1794, 1965
SstI GAGCTC 2 cut(s) 417, 744
StyD4I CCNGG 1 cut(s) 1910
StyI CCWWGG 1 cut(s) 1344
TaaI ACNGT 5 cut(s) 326, 1069, 1422, 1493, 1854
TaiI ACGT 4 cut(s) 362, 605, 719, 1660
TaqI TCGA 8 cut(s) 12, 565, 1063, 1230, 1800, 1847, 1899, 2217
TasI AATT 9 cut(s) 311, 471, 956, 971, 979, 1292, 1380, 1843, 2262
TatI WGTACW 2 cut(s) 399, 843
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 6 cut(s) 148, 173, 216, 375, 999, 1813
Tru1I TTAA 7 cut(s) 309, 368, 470, 474, 596, 1013, 1971
Tru9I TTAA 7 cut(s) 309, 368, 470, 474, 596, 1013, 1971
TseFI GTSAC 6 cut(s) 179, 355, 575, 1684, 1703, 2050
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 6 cut(s) 179, 355, 575, 1684, 1703, 2050
TspGWI ACGGA 2 cut(s) 952, 1229
Tth111I GACNNNGTC 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 2276
XapI RAATTY 3 cut(s) 956, 971, 1843
XceI RCATGY 5 cut(s) 663, 703, 1265, 1828, 2069
XcmI CCANNNNNNNNNTGG 2 cut(s) 1119, 1203
XmiI GTMKAC 3 cut(s) 78, 800, 934
XmnI GAANNNNTTC 2 cut(s) 1853, 2087
XspI CTAG 4 cut(s) 1256, 1545, 1794, 1965
ZraI GACGTC 1 cut(s) 1658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.