gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 3 - 182 | 4.8e-28 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 603 |
| Acc36I | ACCTGC | 1 cut(s) | 603 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 74 |
| AciI | CCGC | 1 cut(s) | 283 |
| AcoI | YGGCCR | 1 cut(s) | 357 |
| AcsI | RAATTY | 1 cut(s) | 236 |
| AcuI | CTGAAG | 1 cut(s) | 521 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AgsI | TTSAA | 3 cut(s) | 121, 242, 296 |
| AluBI | AGCT | 6 cut(s) | 74, 124, 278, 487, 535, 576 |
| AluI | AGCT | 6 cut(s) | 74, 124, 278, 487, 535, 576 |
| Alw26I | GTCTC | 3 cut(s) | 44, 176, 535 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| AoxI | GGCC | 1 cut(s) | 357 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| ApoI | RAATTY | 1 cut(s) | 236 |
| AsuHPI | GGTGA | 3 cut(s) | 151, 268, 566 |
| AsuII | TTCGAA | 1 cut(s) | 592 |
| BalI | TGGCCA | 1 cut(s) | 359 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 428, 460 |
| BbvI | GCAGC | 1 cut(s) | 83 |
| BccI | CCATC | 1 cut(s) | 500 |
| BciVI | GTATCC | 1 cut(s) | 193 |
| BcoDI | GTCTC | 3 cut(s) | 44, 176, 535 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BfuAI | ACCTGC | 1 cut(s) | 603 |
| BfuI | GTATCC | 1 cut(s) | 193 |
| BglII | AGATCT | 1 cut(s) | 213 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmsI | GCATC | 1 cut(s) | 378 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| Bpu14I | TTCGAA | 1 cut(s) | 592 |
| Bsa29I | ATCGAT | 2 cut(s) | 480, 495 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| Bse1I | ACTGG | 2 cut(s) | 41, 58 |
| BseCI | ATCGAT | 2 cut(s) | 480, 495 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMII | CTCAG | 2 cut(s) | 321, 433 |
| BseNI | ACTGG | 2 cut(s) | 41, 58 |
| BseXI | GCAGC | 1 cut(s) | 83 |
| BsgI | GTGCAG | 1 cut(s) | 121 |
| Bsh1285I | CGRYCG | 1 cut(s) | 462 |
| BshFI | GGCC | 1 cut(s) | 359 |
| BshVI | ATCGAT | 2 cut(s) | 480, 495 |
| BsiEI | CGRYCG | 1 cut(s) | 462 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 3 cut(s) | 44, 176, 535 |
| BsnI | GGCC | 1 cut(s) | 359 |
| Bsp119I | TTCGAA | 1 cut(s) | 592 |
| Bsp143I | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| BspACI | CCGC | 1 cut(s) | 283 |
| BspANI | GGCC | 1 cut(s) | 359 |
| BspCNI | CTCAG | 2 cut(s) | 322, 432 |
| BspDI | ATCGAT | 2 cut(s) | 480, 495 |
| BspHI | TCATGA | 1 cut(s) | 523 |
| BspMI | ACCTGC | 1 cut(s) | 603 |
| BspT104I | TTCGAA | 1 cut(s) | 592 |
| BsrI | ACTGG | 2 cut(s) | 41, 58 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 3 cut(s) | 99, 403, 546 |
| Bst6I | CTCTTC | 1 cut(s) | 108 |
| BstBI | TTCGAA | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 3 cut(s) | 69, 276, 574 |
| BstDEI | CTNAG | 4 cut(s) | 301, 330, 419, 599 |
| BstF5I | GGATG | 1 cut(s) | 414 |
| BstKTI | GATC | 7 cut(s) | 169, 216, 266, 425, 462, 484, 564 |
| BstMAI | GTCTC | 3 cut(s) | 44, 176, 535 |
| BstMBI | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| BstMCI | CGRYCG | 1 cut(s) | 462 |
| BstV1I | GCAGC | 1 cut(s) | 83 |
| BstX2I | RGATCY | 1 cut(s) | 213 |
| BstYI | RGATCY | 1 cut(s) | 213 |
| Bsu15I | ATCGAT | 2 cut(s) | 480, 495 |
| BsuI | GTATCC | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 359 |
| BsuTUI | ATCGAT | 2 cut(s) | 480, 495 |
| BtsCI | GGATG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 2 cut(s) | 104, 551 |
| BveI | ACCTGC | 1 cut(s) | 603 |
| Cac8I | GCNNGC | 3 cut(s) | 69, 276, 574 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| CciI | TCATGA | 1 cut(s) | 523 |
| ClaI | ATCGAT | 2 cut(s) | 480, 495 |
| CseI | GACGC | 1 cut(s) | 101 |
| CviAII | CATG | 1 cut(s) | 524 |
| DdeI | CTNAG | 4 cut(s) | 301, 330, 419, 599 |
| DpnI | GATC | 7 cut(s) | 168, 215, 265, 424, 461, 483, 563 |
| DpnII | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| EaeI | YGGCCR | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 108 |
| EarI | CTCTTC | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco57I | CTGAAG | 1 cut(s) | 521 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 1 cut(s) | 527 |
| FaiI | YATR | 3 cut(s) | 60, 227, 525 |
| FatI | CATG | 1 cut(s) | 523 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FokI | GGATG | 1 cut(s) | 401 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GluI | GCNGC | 1 cut(s) | 72 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 359 |
| HgaI | GACGC | 1 cut(s) | 101 |
| Hin1II | CATG | 1 cut(s) | 527 |
| HindIII | AAGCTT | 1 cut(s) | 533 |
| HinfI | GANTC | 2 cut(s) | 221, 467 |
| HphI | GGTGA | 3 cut(s) | 151, 268, 566 |
| Hpy188I | TCNGA | 2 cut(s) | 422, 540 |
| Hpy188III | TCNNGA | 2 cut(s) | 342, 524 |
| Hpy99I | CGWCG | 1 cut(s) | 452 |
| HpyAV | CCTTC | 5 cut(s) | 29, 190, 236, 314, 602 |
| HpyCH4III | ACNGT | 3 cut(s) | 99, 403, 546 |
| HpyCH4IV | ACGT | 1 cut(s) | 447 |
| HpyCH4V | TGCA | 7 cut(s) | 102, 251, 274, 391, 505, 549, 572 |
| HpyF3I | CTNAG | 4 cut(s) | 301, 330, 419, 599 |
| HpySE526I | ACGT | 1 cut(s) | 447 |
| Hsp92II | CATG | 1 cut(s) | 527 |
| Kzo9I | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| LmnI | GCTCC | 2 cut(s) | 82, 129 |
| LpnPI | CCDG | 8 cut(s) | 22, 39, 60, 81, 88, 143, 202, 598 |
| Lsp1109I | GCAGC | 1 cut(s) | 83 |
| LweI | GCATC | 1 cut(s) | 378 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeII | ACGT | 1 cut(s) | 447 |
| MaeIII | GTNAC | 2 cut(s) | 325, 397 |
| MalI | GATC | 7 cut(s) | 168, 215, 265, 424, 461, 483, 563 |
| MboI | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| MboII | GAAGA | 3 cut(s) | 125, 244, 476 |
| MfeI | CAATTG | 1 cut(s) | 162 |
| MflI | RGATCY | 1 cut(s) | 213 |
| MlsI | TGGCCA | 1 cut(s) | 359 |
| MluCI | AATT | 2 cut(s) | 162, 236 |
| MluNI | TGGCCA | 1 cut(s) | 359 |
| MlyI | GAGTC | 1 cut(s) | 230 |
| MnlI | CCTC | 4 cut(s) | 99, 214, 363, 428 |
| Mox20I | TGGCCA | 1 cut(s) | 359 |
| MscI | TGGCCA | 1 cut(s) | 359 |
| MseI | TTAA | 3 cut(s) | 5, 44, 441 |
| Msp20I | TGGCCA | 1 cut(s) | 359 |
| MspA1I | CMGCKG | 1 cut(s) | 74 |
| MunI | CAATTG | 1 cut(s) | 162 |
| NdeII | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| NlaIII | CATG | 1 cut(s) | 527 |
| NspV | TTCGAA | 1 cut(s) | 592 |
| PagI | TCATGA | 1 cut(s) | 523 |
| PaqCI | CACCTGC | 1 cut(s) | 603 |
| PfeI | GAWTC | 1 cut(s) | 467 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 74 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| Ple19I | CGATCG | 1 cut(s) | 462 |
| PleI | GAGTC | 1 cut(s) | 229 |
| PpsI | GAGTC | 1 cut(s) | 229 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 213 |
| PvuI | CGATCG | 1 cut(s) | 462 |
| PvuII | CAGCTG | 1 cut(s) | 74 |
| SaqAI | TTAA | 3 cut(s) | 5, 44, 441 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 7 cut(s) | 166, 213, 263, 422, 459, 481, 561 |
| SchI | GAGTC | 1 cut(s) | 230 |
| SfaNI | GCATC | 1 cut(s) | 378 |
| SfuI | TTCGAA | 1 cut(s) | 592 |
| Sse9I | AATT | 2 cut(s) | 162, 236 |
| SsiI | CCGC | 1 cut(s) | 283 |
| SspI | AATATT | 1 cut(s) | 177 |
| SspMI | CTAG | 1 cut(s) | 110 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 3 cut(s) | 99, 403, 546 |
| TaiI | ACGT | 1 cut(s) | 450 |
| TaqI | TCGA | 7 cut(s) | 169, 341, 458, 462, 480, 495, 592 |
| TasI | AATT | 2 cut(s) | 162, 236 |
| TfiI | GAWTC | 1 cut(s) | 467 |
| Tru1I | TTAA | 3 cut(s) | 5, 44, 441 |
| Tru9I | TTAA | 3 cut(s) | 5, 44, 441 |
| TscAI | CASTG | 2 cut(s) | 104, 551 |
| TseI | GCWGC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 1 cut(s) | 512 |
| TspRI | CASTG | 2 cut(s) | 104, 551 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 74 |
| XapI | RAATTY | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 110 |