RchiOBHm_Chr4g0409151

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000154
Physical Location & Seq
Reverse (-)
32399717 .. 32402006
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38021

Sequence Viewer

Length: 2160 bp
ATGGCAGGGGAAGGGAGCAATAGCAATTTTGCTCCACCTAGTATTCCCAAGTTTGATGGAGACTATGATCACTGGAGCATGCTAATGGAGAATCTCTTGCGATCGAAGGAGTATTGGAGCCTTGTTGAGACTGGCTACACAGAGCCTGCTGAGGGAGAAGTCATGACAGCTGCGCAAAGGAAGACATTGGAAGAATTAAAGCTAAAGGACTTCAAGGTCAAGAATTACCTCTTCCAGTCCATCGATAAATCGATTCTGAAAACCATCATTCAGAAGGACACGTCCAAACATTTGTGGGATTCAATGAAGCGTAAATATCAAGGGAATAAGAGGGTGCAGCGATCTCAACTCCAAACTCTTCGTAGAGAATTTGAGATCCTGGAGATGAAGAGTGGTGAATCAGTCACAGACTACTTCTCAAGGGTGATGATGGTGGCCAATGACATGAGGAATTACGGAGAAAATATGCAGGACGTGAAAATTGTCGAGAAAATCTTACGTACTCTCACAGATAAGTTTAACTATATTGTTTGCTCAATAGAAGAGTCGAAAGATATCGACCATCTTTCTGTAGATGAGTTGCAGAGCTCTCTGCTTGTCCATGAGCAGAAGTTTAGAAAAGGCAACAGTGATGAACAAGTTTTGAAAGTCACAAGTGTTGAGAGGCTTGGACCAAACAGGGAAGAAGATGGATTCGAAGGAAGAGGCAGAGGACGTGGGGTTTTCAGAAGTAGAGGAAGAGGGCGAGGTAGACAAAGCTTCAACAAGGCTGTAGTTGAATGCTTTAAATGCCACAAACTAGGGCATTTTCAATATGAATGCCCTAGTTGGGAGAAGCGAGTGAATTATGCAGAGCTTGAGGAGGAAGATGAACTCTTGCTGATGGCTCATGTGGAGAGGAATGACTCCAAGCCTGAAGATGTGTGGTTTCTAGATAGTGGTTGCAGCAATCATATGTGCTGCAACAAGGATTGGTTCACTAACATTGATGAGGAATTCAGGCACTCTGTGAAACTTGGCAACAATGCAAGGATGTCGGTGATGGGCAAGGGAAGCATCAGGTTAAAGGTGGATGGCTTGACTCAGGTAATCAGTGATGTTTACTTTGTTCCTGAGTTAAGAAATAACCTGCTAAGTATAGGACAATTGCAAGAGAAAGGCTTAGCCATTTTGATACAACATGGGGTCTGCAAAATTTATCATTCGAAGAAGGGACTCATTATGCAGACTCCTATGACCGCAAATCGCATGTTTGTACTTTTGGCTAATGTTGTGGTCACAGACTTCTCCACATGTATGCAAGCTTCTTCAGATGACCTATCACACTTATGGCACTGCCGTTACAGTCACCTAAATTACAAGGGACTCAAAACGCTGCATTATAGAAAGATGGTTAAGGGGCTGCCTCAAATCAAAGCTTCTGCAAGGGTTTGTCATGATTGCTTGGTGGGAAAGCAAAGTCGGGATTCAATTCCGAAGAGTAGCCAGTGGAGAGCTTCACAAAGATTACAGTTAGTGCACGCAGACATCTGCGGACCTATTACTCCTACTTCAAACAGTGACAAGAGGTATGTACTGAGTTTTATTGATGATTTCAGCAGAAAGATGTGGGTTTACTTTCTAACCGAGAAGTCACAAGCTTTTACCATGTTCAAAAGATACAAGAGTCTAGTTGAAAAGGAAATTGGTTTCCCTATTTGTTGCTTGAGGACTGACAGAGGCGGAGAATTCACATCCAATGAATTCAACGAATTTTGTCAGTCTAATGGCATCAAACGCCAGCTCACCGCAGCCTACACTCCTCAGCAAAATGGGGTGGCTGAGAGAAGGAACCGGACGGTCATGAATTTAGTGCGTAGCATCTTGTCTGAAAAGAAGATTCCTAAGAGTTTCTGGCCAGAAGCTGTAAATTGGGTCACACATGTTCTTAATCGAAGTCCAACACAAGCTGTTCAAGATGTGACTCCTGAAGAAGCATGGAGCGGAGTCAAACCAAATGTTGGGTATTTCAGAGTCTTTGGCTGCGTTGCTCACGTCCATATTCCAGATGCCAAGAGAACAAAATTAGATGACAAGAGCTGCAAATGTGTTCTTCTTGGTGTGAGTGAAGAAACAAAGGGTTATAGGCTGTACAACCCTCAACAAAGAGGATTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

719

Amino Acids

82.91

Weight (kDa)

9.01

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 29 - 208 7e-30 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 309 - 387 6.6e-30 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 430 - 486 9e-13 GAG-pre-integrase domain
rve PF00665 501 - 601 1.6e-12 Integrase core domain
SH3_retrovirus PF25597 675 - 716 7.4e-16 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
Acc16I TGCGCA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 1137
AccB7I CCANNNNNTGG 1 cut(s) 2000
AccBSI CCGCTC 1 cut(s) 1983
AccI GTMKAC 1 cut(s) 751
AciI CCGC 5 cut(s) 1239, 1533, 1722, 1788, 1983
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 2 cut(s) 435, 1895
AcsI RAATTY 7 cut(s) 368, 995, 1194, 1727, 1742, 1751, 1846
AcuI CTGAAG 3 cut(s) 936, 1293, 1989
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 4 cut(s) 502, 1257, 1575, 2132
AfiI CCNNNNNNNGG 3 cut(s) 152, 829, 2000
AflIII ACRYGT 3 cut(s) 279, 1292, 1921
AjiI CACGTC 4 cut(s) 282, 475, 716, 2035
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 1668, 1700
Alw21I GWGCWC 2 cut(s) 590, 1521
Alw26I GTCTC 2 cut(s) 54, 122
Alw44I GTGCAC 1 cut(s) 1517
AlwI GGATC 1 cut(s) 370
AlwNI CAGNNNCTG 2 cut(s) 146, 1904
AoxI GGCC 2 cut(s) 435, 1895
ApaLI GTGCAC 1 cut(s) 1517
ApeKI GCWGC 9 cut(s) 170, 337, 945, 960, 1375, 1402, 1790, 2022, 2079
ApoI RAATTY 7 cut(s) 368, 995, 1194, 1727, 1742, 1751, 1846
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 671, 1535
AsuHPI GGTGA 5 cut(s) 407, 436, 1051, 1340, 1777
AsuII TTCGAA 2 cut(s) 696, 1205
AvaII GGWCC 2 cut(s) 671, 1535
BaeGI GKGCMC 1 cut(s) 1521
BaeI ACNNNNGTAYC 2 cut(s) 1651, 1684
BalI TGGCCA 2 cut(s) 437, 1897
BanII GRGCYC 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 1288, 1320
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 590, 1521
BbvCI CCTCAGC 2 cut(s) 150, 1803
BbvI GCAGC 9 cut(s) 157, 349, 947, 957, 1362, 1389, 1802, 2009, 2066
BceAI ACGGC 1 cut(s) 1323
BcgI CGANNNNNNTGC 2 cut(s) 1017, 1051
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 54, 122
BfaI CTAG 5 cut(s) 39, 800, 825, 932, 1670
BfmI CTRYAG 2 cut(s) 570, 771
BfuAI ACCTGC 1 cut(s) 1137
BisI GCNGC 9 cut(s) 171, 338, 946, 961, 1376, 1403, 1791, 2023, 2080
BlpI GCTNAGC 1 cut(s) 1162
BlsI GCNGC 9 cut(s) 172, 339, 947, 962, 1377, 1404, 1792, 2024, 2081
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 2 cut(s) 671, 1535
BmgBI CACGTC 4 cut(s) 282, 475, 716, 2035
BmgT120I GGNCC 2 cut(s) 671, 1535
BmiI GGNNCC 2 cut(s) 119, 1832
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 4 cut(s) 1065, 1779, 1869, 2038
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 2 cut(s) 94, 401
Bpu10I CCTNAGC 2 cut(s) 150, 1803
Bpu1102I GCTNAGC 1 cut(s) 1162
Bpu14I TTCGAA 2 cut(s) 696, 1205
BpuEI CTTGAG 3 cut(s) 403, 878, 1726
Bsa29I ATCGAT 2 cut(s) 243, 251
BsaAI YACGTR 1 cut(s) 500
BsaWI WCCGGW 1 cut(s) 1833
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 829, 2000
Bse1I ACTGG 4 cut(s) 77, 136, 235, 1486
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 2 cut(s) 243, 251
BseGI GGATG 3 cut(s) 1038, 1078, 1733
BseLI CCNNNNNNNGG 3 cut(s) 152, 829, 2000
BseMII CTCAG 6 cut(s) 141, 1097, 1104, 1568, 1812, 1817
BseNI ACTGG 4 cut(s) 77, 136, 235, 1486
BseRI GAGGAG 2 cut(s) 875, 1791
BseSI GKGCMC 1 cut(s) 1521
BseXI GCAGC 9 cut(s) 157, 349, 947, 957, 1362, 1389, 1802, 2009, 2066
BsgI GTGCAG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 437, 1897
BshVI ATCGAT 2 cut(s) 243, 251
BsiEI CGRYCG 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 590, 1521
BsiSI CCGG 1 cut(s) 1834
BslFI GGGAC 2 cut(s) 1227, 1377
BslI CCNNNNNNNGG 3 cut(s) 152, 829, 2000
BsmAI GTCTC 2 cut(s) 54, 122
BsmFI GGGAC 2 cut(s) 1227, 1377
BsmI GAATGC 2 cut(s) 785, 824
BsnI GGCC 2 cut(s) 437, 1897
Bsp119I TTCGAA 2 cut(s) 696, 1205
Bsp1286I GDGCHC 2 cut(s) 590, 1521
Bsp1407I TGTACA 1 cut(s) 2130
Bsp143I GATC 4 cut(s) 67, 101, 341, 375
Bsp1720I GCTNAGC 1 cut(s) 1162
BspACI CCGC 5 cut(s) 1239, 1533, 1722, 1788, 1983
BspANI GGCC 2 cut(s) 437, 1897
BspCNI CTCAG 6 cut(s) 142, 1096, 1105, 1569, 1813, 1816
BspDI ATCGAT 2 cut(s) 243, 251
BspHI TCATGA 3 cut(s) 162, 1435, 1842
BspLI GGNNCC 2 cut(s) 119, 1832
BspMI ACCTGC 1 cut(s) 1137
BspPI GGATC 1 cut(s) 370
BspT104I TTCGAA 2 cut(s) 696, 1205
BsrBI CCGCTC 1 cut(s) 1983
BsrGI TGTACA 1 cut(s) 2130
BsrI ACTGG 4 cut(s) 77, 136, 235, 1486
BssMI GATC 4 cut(s) 67, 101, 341, 375
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 5 cut(s) 629, 1346, 1512, 1559, 1840
Bst6I CTCTTC 7 cut(s) 236, 363, 383, 537, 697, 733, 1472
BstAUI TGTACA 1 cut(s) 2130
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 2 cut(s) 696, 1205
BstC8I GCNNGC 5 cut(s) 80, 147, 1302, 1521, 1781
BstDEI CTNAG 9 cut(s) 150, 1083, 1113, 1133, 1162, 1577, 1803, 1821, 1884
BstF5I GGATG 3 cut(s) 1038, 1078, 1733
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 4 cut(s) 70, 104, 344, 378
BstMAI GTCTC 2 cut(s) 54, 122
BstMBI GATC 4 cut(s) 67, 101, 341, 375
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 789, 1053, 1776
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 4 cut(s) 82, 1252, 1296, 1925
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 570, 771
BstSLI GKGCMC 1 cut(s) 1521
BstSNI TACGTA 1 cut(s) 500
BstV1I GCAGC 9 cut(s) 157, 349, 947, 957, 1362, 1389, 1802, 2009, 2066
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
Bsu15I ATCGAT 2 cut(s) 243, 251
BsuRI GGCC 2 cut(s) 437, 1897
BsuTUI ATCGAT 2 cut(s) 243, 251
BtrI CACGTC 4 cut(s) 282, 475, 716, 2035
BtsCI GGATG 3 cut(s) 1038, 1078, 1733
BtsI GCAGTG 1 cut(s) 1333
BtsIMutI CAGTG 6 cut(s) 70, 634, 1099, 1333, 1493, 1564
BveI ACCTGC 1 cut(s) 1137
Cac8I GCNNGC 5 cut(s) 80, 147, 1302, 1521, 1781
CaiI CAGNNNCTG 2 cut(s) 146, 1904
CciI TCATGA 3 cut(s) 162, 1435, 1842
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 671, 1535
ClaI ATCGAT 2 cut(s) 243, 251
Csp6I GTAC 4 cut(s) 501, 1256, 1574, 2131
CviQI GTAC 4 cut(s) 501, 1256, 1574, 2131
DdeI CTNAG 9 cut(s) 150, 1083, 1113, 1133, 1162, 1577, 1803, 1821, 1884
DpnI GATC 4 cut(s) 69, 103, 343, 377
DpnII GATC 4 cut(s) 67, 101, 341, 375
DraI TTTAAA 1 cut(s) 787
DraIII CACNNNGTG 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 2 cut(s) 435, 1895
Eam1104I CTCTTC 7 cut(s) 236, 363, 383, 537, 697, 733, 1472
EarI CTCTTC 7 cut(s) 236, 363, 383, 537, 697, 733, 1472
EciI GGCGGA 1 cut(s) 1737
Ecl136II GAGCTC 1 cut(s) 588
Eco105I TACGTA 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 590
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 671, 1535
Eco53kI GAGCTC 1 cut(s) 588
Eco57I CTGAAG 3 cut(s) 936, 1293, 1989
EcoICRI GAGCTC 1 cut(s) 588
EcoRI GAATTC 3 cut(s) 995, 1727, 1742
EcoRII CCWGG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 590
FaqI GGGAC 2 cut(s) 1227, 1377
FauNDI CATATG 1 cut(s) 954
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 9 cut(s) 171, 338, 946, 961, 1376, 1403, 1791, 2023, 2080
FokI GGATG 3 cut(s) 1045, 1085, 1720
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 9 cut(s) 171, 338, 946, 961, 1376, 1403, 1791, 2023, 2080
FspBI CTAG 5 cut(s) 39, 800, 825, 932, 1670
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 1 cut(s) 174
GluI GCNGC 9 cut(s) 171, 338, 946, 961, 1376, 1403, 1791, 2023, 2080
GsuI CTGGAG 2 cut(s) 94, 401
HaeIII GGCC 2 cut(s) 437, 1897
HapII CCGG 1 cut(s) 1834
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 4 cut(s) 757, 1302, 1416, 1638
HpaII CCGG 1 cut(s) 1834
HphI GGTGA 5 cut(s) 407, 436, 1051, 1340, 1777
Hpy166II GTNNAC 5 cut(s) 752, 978, 1102, 1519, 1615
Hpy188I TCNGA 7 cut(s) 258, 273, 728, 1312, 1476, 1870, 2012
Hpy8I GTNNAC 5 cut(s) 752, 978, 1102, 1519, 1615
HpyAV CCTTC 6 cut(s) 5, 100, 268, 692, 1204, 1821
HpyCH4III ACNGT 5 cut(s) 629, 1346, 1512, 1559, 1840
HpyCH4IV ACGT 5 cut(s) 281, 474, 499, 715, 2034
HpyF10VI GCNNNNNNNGC 3 cut(s) 789, 1053, 1776
HpyF3I CTNAG 9 cut(s) 150, 1083, 1113, 1133, 1162, 1577, 1803, 1821, 1884
HpySE526I ACGT 5 cut(s) 281, 474, 499, 715, 2034
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 101, 341, 375
LmnI GCTCC 5 cut(s) 15, 37, 75, 117, 1980
Lsp1109I GCAGC 9 cut(s) 157, 349, 947, 957, 1362, 1389, 1802, 2009, 2066
LweI GCATC 4 cut(s) 1065, 1779, 1869, 2038
MaeI CTAG 5 cut(s) 39, 800, 825, 932, 1670
MaeII ACGT 5 cut(s) 281, 474, 499, 715, 2034
MaeIII GTNAC 9 cut(s) 403, 649, 1276, 1340, 1346, 1559, 1632, 1915, 1960
MalI GATC 4 cut(s) 69, 103, 343, 377
MbiI CCGCTC 1 cut(s) 1983
MboI GATC 4 cut(s) 67, 101, 341, 375
MfeI CAATTG 1 cut(s) 1145
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 590, 1521
MlsI TGGCCA 2 cut(s) 437, 1897
MluNI TGGCCA 2 cut(s) 437, 1897
MmeI TCCRAC 1 cut(s) 1964
Mox20I TGGCCA 2 cut(s) 437, 1897
MscI TGGCCA 2 cut(s) 437, 1897
MseI TTAA 7 cut(s) 197, 519, 786, 1064, 1118, 1395, 1929
MslI CAYNNNNRTG 3 cut(s) 83, 1295, 1327
Msp20I TGGCCA 2 cut(s) 437, 1897
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 1834
MspR9I CCNGG 1 cut(s) 380
MunI CAATTG 1 cut(s) 1145
Mva1269I GAATGC 2 cut(s) 785, 824
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 789, 1053, 1776
NdeI CATATG 1 cut(s) 954
NdeII GATC 4 cut(s) 67, 101, 341, 375
NlaIV GGNNCC 2 cut(s) 119, 1832
NmuCI GTSAC 8 cut(s) 403, 649, 1276, 1346, 1559, 1632, 1915, 1960
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 4 cut(s) 82, 1252, 1296, 1925
NspV TTCGAA 2 cut(s) 696, 1205
PaeI GCATGC 1 cut(s) 82
PagI TCATGA 3 cut(s) 162, 1435, 1842
PciI ACATGT 2 cut(s) 1292, 1921
PctI GAATGC 2 cut(s) 785, 824
PfeI GAWTC 7 cut(s) 91, 253, 299, 398, 693, 1466, 1879
PflMI CCANNNNNTGG 1 cut(s) 2000
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 9 cut(s) 172, 339, 947, 962, 1377, 1404, 1792, 2024, 2081
Ple19I CGATCG 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 500
PscI ACATGT 2 cut(s) 1292, 1921
Psp124BI GAGCTC 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 119, 1832
PspPI GGNCC 2 cut(s) 671, 1535
PstNI CAGNNNCTG 2 cut(s) 146, 1904
PsuI RGATCY 1 cut(s) 375
PvuI CGATCG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 4 cut(s) 502, 1257, 1575, 2132
RsaNI GTAC 4 cut(s) 501, 1256, 1574, 2131
RseI CAYNNNNRTG 3 cut(s) 83, 1295, 1327
SacI GAGCTC 1 cut(s) 590
SaqAI TTAA 7 cut(s) 197, 519, 786, 1064, 1118, 1395, 1929
SatI GCNGC 9 cut(s) 171, 338, 946, 961, 1376, 1403, 1791, 2023, 2080
Sau3AI GATC 4 cut(s) 67, 101, 341, 375
Sau96I GGNCC 2 cut(s) 671, 1535
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 590, 1521
SfaNI GCATC 4 cut(s) 1065, 1779, 1869, 2038
SfcI CTRYAG 2 cut(s) 570, 771
SfuI TTCGAA 2 cut(s) 696, 1205
SinI GGWCC 2 cut(s) 671, 1535
SmiMI CAYNNNNRTG 3 cut(s) 83, 1295, 1327
SmlI CTYRAG 3 cut(s) 418, 857, 1705
SmoI CTYRAG 3 cut(s) 418, 857, 1705
SnaBI TACGTA 1 cut(s) 500
SphI GCATGC 1 cut(s) 82
SsiI CCGC 5 cut(s) 1239, 1533, 1722, 1788, 1983
SspMI CTAG 5 cut(s) 39, 800, 825, 932, 1670
SstI GAGCTC 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 5 cut(s) 629, 1346, 1512, 1559, 1840
TaiI ACGT 5 cut(s) 284, 477, 502, 718, 2037
TaqI TCGA 9 cut(s) 104, 243, 251, 486, 548, 558, 696, 1205, 1933
TatI WGTACW 3 cut(s) 1255, 1573, 2130
TfiI GAWTC 7 cut(s) 91, 253, 299, 398, 693, 1466, 1879
Tru1I TTAA 7 cut(s) 197, 519, 786, 1064, 1118, 1395, 1929
Tru9I TTAA 7 cut(s) 197, 519, 786, 1064, 1118, 1395, 1929
TscAI CASTG 6 cut(s) 77, 634, 1099, 1340, 1493, 1564
TseFI GTSAC 8 cut(s) 403, 649, 1276, 1346, 1559, 1632, 1915, 1960
TseI GCWGC 9 cut(s) 170, 337, 945, 960, 1375, 1402, 1790, 2022, 2079
Tsp45I GTSAC 8 cut(s) 403, 649, 1276, 1346, 1559, 1632, 1915, 1960
TspDTI ATGAA 7 cut(s) 320, 401, 648, 831, 885, 1755, 1859
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 6 cut(s) 77, 634, 1099, 1340, 1493, 1564
Van91I CCANNNNNTGG 1 cut(s) 2000
VneI GTGCAC 1 cut(s) 1517
VpaK11BI GGWCC 2 cut(s) 671, 1535
XapI RAATTY 7 cut(s) 368, 995, 1194, 1727, 1742, 1751, 1846
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 4 cut(s) 82, 1252, 1296, 1925
XmiI GTMKAC 1 cut(s) 751
XspI CTAG 5 cut(s) 39, 800, 825, 932, 1670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.