regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 300 - 371 | 9.7e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 87 |
| AatII | GACGTC | 2 cut(s) | 585, 604 |
| Acc36I | ACCTGC | 1 cut(s) | 701 |
| Acc65I | GGTACC | 1 cut(s) | 426 |
| AccB1I | GGYRCC | 1 cut(s) | 426 |
| AccI | GTMKAC | 2 cut(s) | 561, 933 |
| AccII | CGCG | 1 cut(s) | 701 |
| AccIII | TCCGGA | 1 cut(s) | 1049 |
| AciI | CCGC | 8 cut(s) | 678, 701, 781, 856, 912, 922, 977, 1011 |
| AclWI | GGATC | 1 cut(s) | 887 |
| AcsI | RAATTY | 1 cut(s) | 319 |
| AcyI | GRCGYC | 2 cut(s) | 582, 601 |
| AfaI | GTAC | 5 cut(s) | 64, 163, 428, 576, 806 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 837 |
| AgsI | TTSAA | 2 cut(s) | 58, 940 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 557 |
| AjnI | CCWGG | 4 cut(s) | 807, 858, 1075, 1083 |
| AluBI | AGCT | 4 cut(s) | 338, 742, 835, 997 |
| AluI | AGCT | 4 cut(s) | 338, 742, 835, 997 |
| Alw26I | GTCTC | 1 cut(s) | 235 |
| AlwI | GGATC | 1 cut(s) | 887 |
| Aor13HI | TCCGGA | 1 cut(s) | 1049 |
| AoxI | GGCC | 1 cut(s) | 1114 |
| ApeKI | GCWGC | 2 cut(s) | 220, 544 |
| ApoI | RAATTY | 1 cut(s) | 319 |
| Asp718I | GGTACC | 1 cut(s) | 426 |
| AsuHPI | GGTGA | 1 cut(s) | 1093 |
| BanI | GGYRCC | 1 cut(s) | 426 |
| BbvI | GCAGC | 2 cut(s) | 232, 531 |
| BccI | CCATC | 6 cut(s) | 178, 377, 449, 755, 776, 1030 |
| BceAI | ACGGC | 1 cut(s) | 665 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 242, 276 |
| BciT130I | CCWGG | 4 cut(s) | 809, 860, 1077, 1085 |
| BcoDI | GTCTC | 1 cut(s) | 235 |
| BfaI | CTAG | 1 cut(s) | 998 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfuAI | ACCTGC | 1 cut(s) | 701 |
| BisI | GCNGC | 4 cut(s) | 221, 545, 678, 913 |
| BlsI | GCNGC | 4 cut(s) | 222, 546, 679, 914 |
| BmcAI | AGTACT | 1 cut(s) | 163 |
| Bme1390I | CCNGG | 4 cut(s) | 809, 860, 1077, 1085 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 557 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmrFI | CCNGG | 4 cut(s) | 809, 860, 1077, 1085 |
| BmrI | ACTGGG | 1 cut(s) | 868 |
| BmsI | GCATC | 5 cut(s) | 16, 278, 468, 994, 1059 |
| BmuI | ACTGGG | 1 cut(s) | 868 |
| BpuEI | CTTGAG | 2 cut(s) | 312, 506 |
| BsaHI | GRCGYC | 2 cut(s) | 582, 601 |
| BsaJI | CCNNGG | 1 cut(s) | 1075 |
| BsaWI | WCCGGW | 2 cut(s) | 388, 1049 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 810, 840, 1031, 1061 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 837 |
| Bse1I | ACTGG | 1 cut(s) | 874 |
| Bse3DI | GCAATG | 1 cut(s) | 258 |
| BseAI | TCCGGA | 1 cut(s) | 1049 |
| BseBI | CCWGG | 4 cut(s) | 809, 860, 1077, 1085 |
| BseDI | CCNNGG | 1 cut(s) | 1075 |
| BseGI | GGATG | 7 cut(s) | 7, 24, 148, 460, 852, 930, 1074 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 837 |
| BseMI | GCAATG | 1 cut(s) | 258 |
| BseMII | CTCAG | 3 cut(s) | 6, 714, 1042 |
| BseNI | ACTGG | 1 cut(s) | 874 |
| BseXI | GCAGC | 2 cut(s) | 232, 531 |
| BseYI | CCCAGC | 2 cut(s) | 137, 908 |
| Bsh1236I | CGCG | 1 cut(s) | 701 |
| BshFI | GGCC | 1 cut(s) | 1116 |
| BshNI | GGYRCC | 1 cut(s) | 426 |
| BsiSI | CCGG | 4 cut(s) | 264, 389, 1014, 1050 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 837 |
| BsmAI | GTCTC | 1 cut(s) | 235 |
| BsmI | GAATGC | 2 cut(s) | 309, 1094 |
| BsnI | GGCC | 1 cut(s) | 1116 |
| Bsp13I | TCCGGA | 1 cut(s) | 1049 |
| Bsp143I | GATC | 3 cut(s) | 490, 726, 879 |
| BspACI | CCGC | 8 cut(s) | 678, 701, 781, 856, 912, 922, 977, 1011 |
| BspANI | GGCC | 1 cut(s) | 1116 |
| BspCNI | CTCAG | 3 cut(s) | 7, 715, 1041 |
| BspEI | TCCGGA | 1 cut(s) | 1049 |
| BspFNI | CGCG | 1 cut(s) | 701 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspMI | ACCTGC | 1 cut(s) | 701 |
| BspPI | GGATC | 1 cut(s) | 887 |
| BspT107I | GGYRCC | 1 cut(s) | 426 |
| BsrDI | GCAATG | 1 cut(s) | 258 |
| BsrI | ACTGG | 1 cut(s) | 874 |
| BssECI | CCNNGG | 1 cut(s) | 1075 |
| BssMI | GATC | 3 cut(s) | 490, 726, 879 |
| BssNI | GRCGYC | 2 cut(s) | 582, 601 |
| Bst2UI | CCWGG | 4 cut(s) | 809, 860, 1077, 1085 |
| Bst6I | CTCTTC | 1 cut(s) | 816 |
| BstACI | GRCGYC | 2 cut(s) | 582, 601 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 275 |
| BstC8I | GCNNGC | 1 cut(s) | 958 |
| BstDEI | CTNAG | 3 cut(s) | 15, 723, 1028 |
| BstF5I | GGATG | 7 cut(s) | 7, 24, 148, 460, 852, 930, 1074 |
| BstFNI | CGCG | 1 cut(s) | 701 |
| BstKTI | GATC | 3 cut(s) | 493, 729, 882 |
| BstMAI | GTCTC | 1 cut(s) | 235 |
| BstMBI | GATC | 3 cut(s) | 490, 726, 879 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 686, 707 |
| BstNI | CCWGG | 4 cut(s) | 809, 860, 1077, 1085 |
| BstNSI | RCATGY | 1 cut(s) | 960 |
| BstSCI | CCNGG | 4 cut(s) | 807, 858, 1075, 1083 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstUI | CGCG | 1 cut(s) | 701 |
| BstV1I | GCAGC | 2 cut(s) | 232, 531 |
| BstX2I | RGATCY | 1 cut(s) | 879 |
| BstYI | RGATCY | 1 cut(s) | 879 |
| BsuRI | GGCC | 1 cut(s) | 1116 |
| BtsCI | GGATG | 7 cut(s) | 7, 24, 148, 460, 852, 930, 1074 |
| BtsIMutI | CAGTG | 1 cut(s) | 881 |
| BveI | ACCTGC | 1 cut(s) | 701 |
| Cac8I | GCNNGC | 1 cut(s) | 958 |
| CseI | GACGC | 1 cut(s) | 1049 |
| Csp6I | GTAC | 5 cut(s) | 63, 162, 427, 575, 805 |
| CviAII | CATG | 5 cut(s) | 273, 398, 706, 957, 1019 |
| CviQI | GTAC | 5 cut(s) | 63, 162, 427, 575, 805 |
| DdeI | CTNAG | 3 cut(s) | 15, 723, 1028 |
| DpnI | GATC | 3 cut(s) | 492, 728, 881 |
| DpnII | GATC | 3 cut(s) | 490, 726, 879 |
| DriI | GACNNNNNGTC | 1 cut(s) | 557 |
| Eam1104I | CTCTTC | 1 cut(s) | 816 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 816 |
| EciI | GGCGGA | 2 cut(s) | 845, 937 |
| Eco147I | AGGCCT | 1 cut(s) | 1116 |
| Eco32I | GATATC | 1 cut(s) | 505 |
| EcoRII | CCWGG | 4 cut(s) | 807, 858, 1075, 1083 |
| EcoRV | GATATC | 1 cut(s) | 505 |
| FaeI | CATG | 5 cut(s) | 276, 401, 709, 960, 1022 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 148, 180 |
| FatI | CATG | 5 cut(s) | 272, 397, 705, 956, 1018 |
| FauI | CCCGC | 1 cut(s) | 984 |
| FblI | GTMKAC | 2 cut(s) | 561, 933 |
| Fnu4HI | GCNGC | 4 cut(s) | 221, 545, 678, 913 |
| FokI | GGATG | 6 cut(s) | 11, 155, 467, 839, 937, 1081 |
| Fsp4HI | GCNGC | 4 cut(s) | 221, 545, 678, 913 |
| FspBI | CTAG | 1 cut(s) | 998 |
| GluI | GCNGC | 4 cut(s) | 221, 545, 678, 913 |
| GsaI | CCCAGC | 2 cut(s) | 141, 912 |
| HaeIII | GGCC | 1 cut(s) | 1116 |
| HapII | CCGG | 4 cut(s) | 264, 389, 1014, 1050 |
| HgaI | GACGC | 1 cut(s) | 1049 |
| Hin1I | GRCGYC | 2 cut(s) | 582, 601 |
| Hin1II | CATG | 5 cut(s) | 276, 401, 709, 960, 1022 |
| HincII | GTYRAC | 3 cut(s) | 240, 562, 934 |
| HindII | GTYRAC | 3 cut(s) | 240, 562, 934 |
| HinfI | GANTC | 4 cut(s) | 385, 472, 590, 849 |
| HpaII | CCGG | 4 cut(s) | 264, 389, 1014, 1050 |
| HphI | GGTGA | 1 cut(s) | 1093 |
| Hpy166II | GTNNAC | 5 cut(s) | 120, 240, 562, 577, 934 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 495, 599 |
| Hpy188III | TCNNGA | 3 cut(s) | 722, 901, 1050 |
| Hpy8I | GTNNAC | 5 cut(s) | 120, 240, 562, 577, 934 |
| Hpy99I | CGWCG | 2 cut(s) | 584, 606 |
| HpyAV | CCTTC | 3 cut(s) | 85, 619, 1108 |
| HpyCH4IV | ACGT | 3 cut(s) | 573, 582, 601 |
| HpyCH4V | TGCA | 6 cut(s) | 35, 344, 689, 1007, 1072, 1092 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 686, 707 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 723, 1028 |
| HpySE526I | ACGT | 3 cut(s) | 573, 582, 601 |
| Hsp92I | GRCGYC | 2 cut(s) | 582, 601 |
| Hsp92II | CATG | 5 cut(s) | 276, 401, 709, 960, 1022 |
| Kpn2I | TCCGGA | 1 cut(s) | 1049 |
| KpnI | GGTACC | 1 cut(s) | 430 |
| Kzo9I | GATC | 3 cut(s) | 490, 726, 879 |
| LmnI | GCTCC | 3 cut(s) | 4, 266, 405 |
| Lsp1109I | GCAGC | 2 cut(s) | 232, 531 |
| LweI | GCATC | 5 cut(s) | 16, 278, 468, 994, 1059 |
| MaeI | CTAG | 1 cut(s) | 998 |
| MaeII | ACGT | 3 cut(s) | 573, 582, 601 |
| MaeIII | GTNAC | 3 cut(s) | 45, 353, 393 |
| MalI | GATC | 3 cut(s) | 492, 728, 881 |
| MboI | GATC | 3 cut(s) | 490, 726, 879 |
| MboII | GAAGA | 2 cut(s) | 500, 833 |
| MfeI | CAATTG | 1 cut(s) | 66 |
| MflI | RGATCY | 1 cut(s) | 879 |
| MluCI | AATT | 5 cut(s) | 66, 314, 319, 659, 886 |
| MlyI | GAGTC | 1 cut(s) | 584 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MroI | TCCGGA | 1 cut(s) | 1049 |
| MseI | TTAA | 2 cut(s) | 296, 317 |
| MslI | CAYNNNNRTG | 1 cut(s) | 417 |
| MspA1I | CMGCKG | 1 cut(s) | 912 |
| MspI | CCGG | 4 cut(s) | 264, 389, 1014, 1050 |
| MspR9I | CCNGG | 4 cut(s) | 809, 860, 1077, 1085 |
| MunI | CAATTG | 1 cut(s) | 66 |
| Mva1269I | GAATGC | 2 cut(s) | 309, 1094 |
| MvaI | CCWGG | 4 cut(s) | 809, 860, 1077, 1085 |
| MvnI | CGCG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 686, 707 |
| NdeII | GATC | 3 cut(s) | 490, 726, 879 |
| NlaIII | CATG | 5 cut(s) | 276, 401, 709, 960, 1022 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NmeAIII | GCCGAG | 1 cut(s) | 277 |
| NmuCI | GTSAC | 1 cut(s) | 353 |
| NspI | RCATGY | 1 cut(s) | 960 |
| PaeI | GCATGC | 1 cut(s) | 960 |
| PceI | AGGCCT | 1 cut(s) | 1116 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 579 |
| PctI | GAATGC | 2 cut(s) | 309, 1094 |
| PfeI | GAWTC | 3 cut(s) | 385, 472, 849 |
| PflFI | GACNNNGTC | 1 cut(s) | 593 |
| PkrI | GCNGC | 4 cut(s) | 222, 546, 679, 914 |
| PleI | GAGTC | 1 cut(s) | 584 |
| PpsI | GAGTC | 1 cut(s) | 584 |
| PsiI | TTATAA | 1 cut(s) | 87 |
| Psp6I | CCWGG | 4 cut(s) | 807, 858, 1075, 1083 |
| PspFI | CCCAGC | 2 cut(s) | 137, 908 |
| PspGI | CCWGG | 4 cut(s) | 807, 858, 1075, 1083 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PsuI | RGATCY | 1 cut(s) | 879 |
| PsyI | GACNNNGTC | 1 cut(s) | 593 |
| RsaI | GTAC | 5 cut(s) | 64, 163, 428, 576, 806 |
| RsaNI | GTAC | 5 cut(s) | 63, 162, 427, 575, 805 |
| RseI | CAYNNNNRTG | 1 cut(s) | 417 |
| SalI | GTCGAC | 2 cut(s) | 560, 932 |
| SaqAI | TTAA | 2 cut(s) | 296, 317 |
| SatI | GCNGC | 4 cut(s) | 221, 545, 678, 913 |
| Sau3AI | GATC | 3 cut(s) | 490, 726, 879 |
| ScaI | AGTACT | 1 cut(s) | 163 |
| SchI | GAGTC | 1 cut(s) | 584 |
| ScrFI | CCNGG | 4 cut(s) | 809, 860, 1077, 1085 |
| SfaNI | GCATC | 5 cut(s) | 16, 278, 468, 994, 1059 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 417 |
| SmlI | CTYRAG | 2 cut(s) | 327, 521 |
| SmoI | CTYRAG | 2 cut(s) | 327, 521 |
| SphI | GCATGC | 1 cut(s) | 960 |
| Sse9I | AATT | 5 cut(s) | 66, 314, 319, 659, 886 |
| SseBI | AGGCCT | 1 cut(s) | 1116 |
| SsiI | CCGC | 8 cut(s) | 678, 701, 781, 856, 912, 922, 977, 1011 |
| SspMI | CTAG | 1 cut(s) | 998 |
| StuI | AGGCCT | 1 cut(s) | 1116 |
| StyD4I | CCNGG | 4 cut(s) | 807, 858, 1075, 1083 |
| TaiI | ACGT | 3 cut(s) | 576, 585, 604 |
| TaqI | TCGA | 4 cut(s) | 283, 561, 933, 1002 |
| TasI | AATT | 5 cut(s) | 66, 314, 319, 659, 886 |
| TatI | WGTACW | 1 cut(s) | 161 |
| TauI | GCSGC | 2 cut(s) | 680, 915 |
| TfiI | GAWTC | 3 cut(s) | 385, 472, 849 |
| Tru1I | TTAA | 2 cut(s) | 296, 317 |
| Tru9I | TTAA | 2 cut(s) | 296, 317 |
| TscAI | CASTG | 1 cut(s) | 881 |
| TseFI | GTSAC | 1 cut(s) | 353 |
| TseI | GCWGC | 2 cut(s) | 220, 544 |
| Tsp45I | GTSAC | 1 cut(s) | 353 |
| TspDTI | ATGAA | 6 cut(s) | 247, 464, 634, 638, 841, 1035 |
| TspRI | CASTG | 1 cut(s) | 881 |
| Tth111I | GACNNNGTC | 1 cut(s) | 593 |
| XapI | RAATTY | 1 cut(s) | 319 |
| XceI | RCATGY | 1 cut(s) | 960 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 892 |
| XmiI | GTMKAC | 2 cut(s) | 561, 933 |
| XspI | CTAG | 1 cut(s) | 998 |
| ZraI | GACGTC | 2 cut(s) | 583, 602 |
| ZrmI | AGTACT | 1 cut(s) | 163 |