Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1141 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1113 |
| Acc36I | ACCTGC | 1 cut(s) | 767 |
| AclWI | GGATC | 1 cut(s) | 319 |
| AcoI | YGGCCR | 1 cut(s) | 361 |
| AcsI | RAATTY | 4 cut(s) | 48, 71, 660, 685 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 727 |
| AjiI | CACGTC | 1 cut(s) | 248 |
| AjnI | CCWGG | 1 cut(s) | 708 |
| AluBI | AGCT | 4 cut(s) | 136, 200, 893, 1067 |
| AluI | AGCT | 4 cut(s) | 136, 200, 893, 1067 |
| Alw21I | GWGCWC | 1 cut(s) | 1069 |
| Alw26I | GTCTC | 2 cut(s) | 214, 582 |
| AlwI | GGATC | 1 cut(s) | 319 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1078 |
| Ama87I | CYCGRG | 1 cut(s) | 795 |
| AoxI | GGCC | 2 cut(s) | 361, 712 |
| ApeKI | GCWGC | 2 cut(s) | 136, 1072 |
| ApoI | RAATTY | 4 cut(s) | 48, 71, 660, 685 |
| AseI | ATTAAT | 1 cut(s) | 171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 3 cut(s) | 712, 756, 1106 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 26, 733, 976 |
| AsuII | TTCGAA | 1 cut(s) | 1124 |
| AvaI | CYCGRG | 1 cut(s) | 795 |
| AvaII | GGWCC | 2 cut(s) | 756, 1106 |
| BalI | TGGCCA | 1 cut(s) | 363 |
| BanII | GRGCYC | 1 cut(s) | 1069 |
| BbsI | GAAGAC | 1 cut(s) | 947 |
| Bbv12I | GWGCWC | 1 cut(s) | 1069 |
| BbvI | GCAGC | 2 cut(s) | 123, 1084 |
| BccI | CCATC | 4 cut(s) | 448, 752, 839, 1000 |
| BciT130I | CCWGG | 1 cut(s) | 710 |
| BclI | TGATCA | 1 cut(s) | 1036 |
| BcoDI | GTCTC | 2 cut(s) | 214, 582 |
| BfuAI | ACCTGC | 1 cut(s) | 767 |
| BisI | GCNGC | 2 cut(s) | 137, 1073 |
| BlpI | GCTNAGC | 1 cut(s) | 1068 |
| BlsI | GCNGC | 2 cut(s) | 138, 1074 |
| Bme1390I | CCNGG | 1 cut(s) | 710 |
| Bme18I | GGWCC | 2 cut(s) | 756, 1106 |
| BmeT110I | CYCGRG | 1 cut(s) | 795 |
| BmgBI | CACGTC | 1 cut(s) | 248 |
| BmgT120I | GGNCC | 3 cut(s) | 712, 756, 1106 |
| BmiI | GGNNCC | 2 cut(s) | 757, 1108 |
| BmrFI | CCNGG | 1 cut(s) | 710 |
| BmsI | GCATC | 2 cut(s) | 500, 928 |
| BpiI | GAAGAC | 1 cut(s) | 947 |
| BpmI | CTGGAG | 1 cut(s) | 1100 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1068 |
| Bpu14I | TTCGAA | 1 cut(s) | 1124 |
| BsaBI | GATNNNNATC | 1 cut(s) | 743 |
| BsaI | GGTCTC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 2 cut(s) | 10, 709 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 727 |
| Bse1I | ACTGG | 2 cut(s) | 666, 1083 |
| Bse8I | GATNNNNATC | 1 cut(s) | 743 |
| BseBI | CCWGG | 1 cut(s) | 710 |
| BseDI | CCNNGG | 2 cut(s) | 10, 709 |
| BseGI | GGATG | 1 cut(s) | 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 743 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BseMII | CTCAG | 3 cut(s) | 540, 1082, 1107 |
| BseNI | ACTGG | 2 cut(s) | 666, 1083 |
| BseRI | GAGGAG | 2 cut(s) | 206, 978 |
| BseXI | GCAGC | 2 cut(s) | 123, 1084 |
| BshFI | GGCC | 2 cut(s) | 363, 714 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1069 |
| BsiHKCI | CYCGRG | 1 cut(s) | 795 |
| BslFI | GGGAC | 1 cut(s) | 769 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BsmAI | GTCTC | 2 cut(s) | 214, 582 |
| BsmFI | GGGAC | 1 cut(s) | 769 |
| BsmI | GAATGC | 1 cut(s) | 344 |
| BsnI | GGCC | 2 cut(s) | 363, 714 |
| Bso31I | GGTCTC | 1 cut(s) | 214 |
| BsoBI | CYCGRG | 1 cut(s) | 795 |
| Bsp119I | TTCGAA | 1 cut(s) | 1124 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1069 |
| Bsp143I | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1068 |
| Bsp19I | CCATGG | 1 cut(s) | 10 |
| BspANI | GGCC | 2 cut(s) | 363, 714 |
| BspCNI | CTCAG | 3 cut(s) | 541, 1081, 1106 |
| BspHI | TCATGA | 1 cut(s) | 157 |
| BspLI | GGNNCC | 2 cut(s) | 757, 1108 |
| BspMI | ACCTGC | 1 cut(s) | 767 |
| BspPI | GGATC | 1 cut(s) | 319 |
| BspT104I | TTCGAA | 1 cut(s) | 1124 |
| BspTNI | GGTCTC | 1 cut(s) | 214 |
| BsrI | ACTGG | 2 cut(s) | 666, 1083 |
| BssECI | CCNNGG | 2 cut(s) | 10, 709 |
| BssMI | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| Bst2UI | CCWGG | 1 cut(s) | 710 |
| Bst4CI | ACNGT | 2 cut(s) | 577, 601 |
| Bst6I | CTCTTC | 3 cut(s) | 217, 253, 471 |
| BstBI | TTCGAA | 1 cut(s) | 1124 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 3 cut(s) | 549, 1068, 1093 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstF5I | GGATG | 1 cut(s) | 562 |
| BstKTI | GATC | 4 cut(s) | 59, 314, 741, 1039 |
| BstMAI | GTCTC | 2 cut(s) | 214, 582 |
| BstMBI | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 348, 1064 |
| BstNI | CCWGG | 1 cut(s) | 710 |
| BstNSI | RCATGY | 1 cut(s) | 462 |
| BstSCI | CCNGG | 1 cut(s) | 708 |
| BstV1I | GCAGC | 2 cut(s) | 123, 1084 |
| BstV2I | GAAGAC | 1 cut(s) | 947 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BsuRI | GGCC | 2 cut(s) | 363, 714 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtrI | CACGTC | 1 cut(s) | 248 |
| BtsCI | GGATG | 1 cut(s) | 562 |
| BtsIMutI | CAGTG | 2 cut(s) | 673, 1076 |
| BveI | ACCTGC | 1 cut(s) | 767 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1078 |
| CciI | TCATGA | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 3 cut(s) | 712, 756, 1106 |
| CviAII | CATG | 7 cut(s) | 11, 107, 158, 459, 637, 805, 1059 |
| DdeI | CTNAG | 3 cut(s) | 549, 1068, 1093 |
| DpnI | GATC | 4 cut(s) | 58, 313, 740, 1038 |
| DpnII | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1113 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1113 |
| EaeI | YGGCCR | 1 cut(s) | 361 |
| Eam1104I | CTCTTC | 3 cut(s) | 217, 253, 471 |
| EarI | CTCTTC | 3 cut(s) | 217, 253, 471 |
| Ecl136II | GAGCTC | 1 cut(s) | 1067 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| Eco24I | GRGCYC | 1 cut(s) | 1069 |
| Eco31I | GGTCTC | 1 cut(s) | 214 |
| Eco47I | GGWCC | 2 cut(s) | 756, 1106 |
| Eco53kI | GAGCTC | 1 cut(s) | 1067 |
| Eco88I | CYCGRG | 1 cut(s) | 795 |
| EcoICRI | GAGCTC | 1 cut(s) | 1067 |
| EcoO109I | RGGNCCY | 1 cut(s) | 756 |
| EcoRII | CCWGG | 1 cut(s) | 708 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| EcoT22I | ATGCAT | 1 cut(s) | 66 |
| EcoT38I | GRGCYC | 1 cut(s) | 1069 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 7 cut(s) | 14, 110, 161, 462, 640, 808, 1062 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1105, 1137 |
| FaqI | GGGAC | 1 cut(s) | 769 |
| FatI | CATG | 7 cut(s) | 10, 106, 157, 458, 636, 804, 1058 |
| FauNDI | CATATG | 1 cut(s) | 522 |
| FbaI | TGATCA | 1 cut(s) | 1036 |
| Fnu4HI | GCNGC | 2 cut(s) | 137, 1073 |
| FokI | GGATG | 1 cut(s) | 569 |
| FriOI | GRGCYC | 1 cut(s) | 1069 |
| Fsp4HI | GCNGC | 2 cut(s) | 137, 1073 |
| GluI | GCNGC | 2 cut(s) | 137, 1073 |
| GsuI | CTGGAG | 1 cut(s) | 1100 |
| HaeIII | GGCC | 2 cut(s) | 363, 714 |
| Hin1II | CATG | 7 cut(s) | 14, 110, 161, 462, 640, 808, 1062 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| HinfI | GANTC | 8 cut(s) | 6, 101, 273, 479, 503, 560, 773, 853 |
| HphI | GGTGA | 4 cut(s) | 25, 26, 733, 976 |
| Hpy166II | GTNNAC | 2 cut(s) | 802, 1106 |
| Hpy188I | TCNGA | 5 cut(s) | 376, 550, 778, 852, 1096 |
| Hpy188III | TCNNGA | 3 cut(s) | 158, 288, 507 |
| Hpy8I | GTNNAC | 2 cut(s) | 802, 1106 |
| HpyAV | CCTTC | 2 cut(s) | 199, 721 |
| HpyCH4III | ACNGT | 2 cut(s) | 577, 601 |
| HpyCH4IV | ACGT | 2 cut(s) | 247, 1033 |
| HpyCH4V | TGCA | 5 cut(s) | 64, 139, 513, 875, 949 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 348, 1064 |
| HpyF3I | CTNAG | 3 cut(s) | 549, 1068, 1093 |
| HpySE526I | ACGT | 2 cut(s) | 247, 1033 |
| Hsp92II | CATG | 7 cut(s) | 14, 110, 161, 462, 640, 808, 1062 |
| Ksp22I | TGATCA | 1 cut(s) | 1036 |
| Kzo9I | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| LmnI | GCTCC | 2 cut(s) | 193, 991 |
| LpnPI | CCDG | 9 cut(s) | 301, 340, 386, 679, 695, 722, 772, 954, 1064 |
| Lsp1109I | GCAGC | 2 cut(s) | 123, 1084 |
| LweI | GCATC | 2 cut(s) | 500, 928 |
| MaeII | ACGT | 2 cut(s) | 247, 1033 |
| MaeIII | GTNAC | 4 cut(s) | 14, 31, 695, 964 |
| MalI | GATC | 4 cut(s) | 58, 313, 740, 1038 |
| MboI | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| MfeI | CAATTG | 2 cut(s) | 225, 346 |
| MhlI | GDGCHC | 1 cut(s) | 1069 |
| MlsI | TGGCCA | 1 cut(s) | 363 |
| MluNI | TGGCCA | 1 cut(s) | 363 |
| MlyI | GAGTC | 2 cut(s) | 488, 569 |
| MmeI | TCCRAC | 3 cut(s) | 240, 534, 1142 |
| Mox20I | TGGCCA | 1 cut(s) | 363 |
| Mph1103I | ATGCAT | 1 cut(s) | 66 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 363 |
| MseI | TTAA | 4 cut(s) | 171, 924, 930, 1085 |
| MslI | CAYNNNNRTG | 2 cut(s) | 357, 525 |
| Msp20I | TGGCCA | 1 cut(s) | 363 |
| MspR9I | CCNGG | 1 cut(s) | 710 |
| MunI | CAATTG | 2 cut(s) | 225, 346 |
| Mva1269I | GAATGC | 1 cut(s) | 344 |
| MvaI | CCWGG | 1 cut(s) | 710 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 348, 1064 |
| NcoI | CCATGG | 1 cut(s) | 10 |
| NdeI | CATATG | 1 cut(s) | 522 |
| NdeII | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| NlaIII | CATG | 7 cut(s) | 14, 110, 161, 462, 640, 808, 1062 |
| NlaIV | GGNNCC | 2 cut(s) | 757, 1108 |
| NmuCI | GTSAC | 3 cut(s) | 14, 31, 964 |
| NsiI | ATGCAT | 1 cut(s) | 66 |
| NspI | RCATGY | 1 cut(s) | 462 |
| NspV | TTCGAA | 1 cut(s) | 1124 |
| PaeR7I | CTCGAG | 1 cut(s) | 795 |
| PagI | TCATGA | 1 cut(s) | 157 |
| PctI | GAATGC | 1 cut(s) | 344 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 6 cut(s) | 6, 101, 273, 503, 773, 853 |
| PflFI | GACNNNGTC | 1 cut(s) | 249 |
| PkrI | GCNGC | 2 cut(s) | 138, 1074 |
| PleI | GAGTC | 2 cut(s) | 487, 568 |
| PpsI | GAGTC | 2 cut(s) | 487, 568 |
| PpuMI | RGGWCCY | 1 cut(s) | 756 |
| PshBI | ATTAAT | 1 cut(s) | 171 |
| PsiI | TTATAA | 1 cut(s) | 1141 |
| Psp124BI | GAGCTC | 1 cut(s) | 1069 |
| Psp5II | RGGWCCY | 1 cut(s) | 756 |
| Psp6I | CCWGG | 1 cut(s) | 708 |
| PspGI | CCWGG | 1 cut(s) | 708 |
| PspN4I | GGNNCC | 2 cut(s) | 757, 1108 |
| PspPI | GGNCC | 3 cut(s) | 712, 756, 1106 |
| PspPPI | RGGWCCY | 1 cut(s) | 756 |
| PspXI | VCTCGAGB | 1 cut(s) | 795 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1078 |
| PsyI | GACNNNGTC | 1 cut(s) | 249 |
| RseI | CAYNNNNRTG | 2 cut(s) | 357, 525 |
| SacI | GAGCTC | 1 cut(s) | 1069 |
| SaqAI | TTAA | 4 cut(s) | 171, 924, 930, 1085 |
| SatI | GCNGC | 2 cut(s) | 137, 1073 |
| Sau3AI | GATC | 4 cut(s) | 56, 311, 738, 1036 |
| Sau96I | GGNCC | 3 cut(s) | 712, 756, 1106 |
| SchI | GAGTC | 2 cut(s) | 488, 569 |
| ScrFI | CCNGG | 1 cut(s) | 710 |
| SduI | GDGCHC | 1 cut(s) | 1069 |
| SfaNI | GCATC | 2 cut(s) | 500, 928 |
| Sfr274I | CTCGAG | 1 cut(s) | 795 |
| SfuI | TTCGAA | 1 cut(s) | 1124 |
| SinI | GGWCC | 2 cut(s) | 756, 1106 |
| SlaI | CTCGAG | 1 cut(s) | 795 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 357, 525 |
| SmlI | CTYRAG | 1 cut(s) | 795 |
| SmoI | CTYRAG | 1 cut(s) | 795 |
| SspI | AATATT | 1 cut(s) | 334 |
| SstI | GAGCTC | 1 cut(s) | 1069 |
| StyD4I | CCNGG | 1 cut(s) | 708 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaaI | ACNGT | 2 cut(s) | 577, 601 |
| TaiI | ACGT | 2 cut(s) | 250, 1036 |
| TaqI | TCGA | 6 cut(s) | 55, 92, 125, 796, 910, 1124 |
| TfiI | GAWTC | 6 cut(s) | 6, 101, 273, 503, 773, 853 |
| Tru1I | TTAA | 4 cut(s) | 171, 924, 930, 1085 |
| Tru9I | TTAA | 4 cut(s) | 171, 924, 930, 1085 |
| TscAI | CASTG | 2 cut(s) | 673, 1083 |
| TseFI | GTSAC | 3 cut(s) | 14, 31, 964 |
| TseI | GCWGC | 2 cut(s) | 136, 1072 |
| Tsp45I | GTSAC | 3 cut(s) | 14, 31, 964 |
| TspDTI | ATGAA | 3 cut(s) | 132, 146, 653 |
| TspRI | CASTG | 2 cut(s) | 673, 1083 |
| Tth111I | GACNNNGTC | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 2 cut(s) | 756, 1106 |
| VspI | ATTAAT | 1 cut(s) | 171 |
| XapI | RAATTY | 4 cut(s) | 48, 71, 660, 685 |
| XceI | RCATGY | 1 cut(s) | 462 |
| XhoI | CTCGAG | 1 cut(s) | 795 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| Zsp2I | ATGCAT | 1 cut(s) | 66 |