transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 158 | 1.7e-43 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AclWI | GGATC | 1 cut(s) | 71 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcuI | CTGAAG | 2 cut(s) | 273, 492 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AflII | CTTAAG | 1 cut(s) | 107 |
| AgsI | TTSAA | 6 cut(s) | 38, 56, 201, 285, 305, 338 |
| AluBI | AGCT | 4 cut(s) | 116, 146, 476, 544 |
| AluI | AGCT | 4 cut(s) | 116, 146, 476, 544 |
| Alw26I | GTCTC | 2 cut(s) | 151, 407 |
| AlwI | GGATC | 1 cut(s) | 71 |
| ApeKI | GCWGC | 1 cut(s) | 461 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 260, 292 |
| AsuNHI | GCTAGC | 1 cut(s) | 493 |
| AxyI | CCTNAGG | 1 cut(s) | 551 |
| BbvI | GCAGC | 1 cut(s) | 448 |
| BccI | CCATC | 2 cut(s) | 93, 392 |
| BcoDI | GTCTC | 2 cut(s) | 151, 407 |
| BfaI | CTAG | 3 cut(s) | 141, 494, 533 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BfrI | CTTAAG | 1 cut(s) | 107 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BisI | GCNGC | 1 cut(s) | 462 |
| BlsI | GCNGC | 1 cut(s) | 463 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BmtI | GCTAGC | 1 cut(s) | 497 |
| BpuEI | CTTGAG | 1 cut(s) | 237 |
| BsaI | GGTCTC | 1 cut(s) | 407 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 385, 415 |
| Bse21I | CCTNAGG | 1 cut(s) | 551 |
| BseGI | GGATG | 4 cut(s) | 10, 85, 271, 463 |
| BseXI | GCAGC | 1 cut(s) | 448 |
| BsmAI | GTCTC | 2 cut(s) | 151, 407 |
| Bso31I | GGTCTC | 1 cut(s) | 407 |
| Bsp143I | GATC | 1 cut(s) | 76 |
| BspHI | TCATGA | 1 cut(s) | 321 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspOI | GCTAGC | 1 cut(s) | 497 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BspTI | CTTAAG | 1 cut(s) | 107 |
| BspTNI | GGTCTC | 1 cut(s) | 407 |
| BssMI | GATC | 1 cut(s) | 76 |
| BstAFI | CTTAAG | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 1 cut(s) | 551 |
| BstF5I | GGATG | 4 cut(s) | 10, 85, 271, 463 |
| BstKTI | GATC | 1 cut(s) | 79 |
| BstMAI | GTCTC | 2 cut(s) | 151, 407 |
| BstMBI | GATC | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 467 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 1 cut(s) | 448 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| Bsu36I | CCTNAGG | 1 cut(s) | 551 |
| BtsCI | GGATG | 4 cut(s) | 10, 85, 271, 463 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 1 cut(s) | 495 |
| CciI | TCATGA | 1 cut(s) | 321 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CviAII | CATG | 2 cut(s) | 95, 322 |
| CviJI | RGCY | 8 cut(s) | 116, 127, 137, 146, 186, 453, 476, 544 |
| CviKI_1 | RGCY | 8 cut(s) | 116, 127, 137, 146, 186, 453, 476, 544 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DdeI | CTNAG | 1 cut(s) | 551 |
| DpnI | GATC | 1 cut(s) | 78 |
| DpnII | GATC | 1 cut(s) | 76 |
| DraI | TTTAAA | 1 cut(s) | 24 |
| Eco31I | GGTCTC | 1 cut(s) | 407 |
| Eco32I | GATATC | 1 cut(s) | 538 |
| Eco57I | CTGAAG | 2 cut(s) | 273, 492 |
| Eco81I | CCTNAGG | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 308 |
| EcoRV | GATATC | 1 cut(s) | 538 |
| FaeI | CATG | 2 cut(s) | 98, 325 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 437, 469 |
| FatI | CATG | 2 cut(s) | 94, 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 462 |
| FokI | GGATG | 4 cut(s) | 17, 72, 278, 470 |
| Fsp4HI | GCNGC | 1 cut(s) | 462 |
| FspBI | CTAG | 3 cut(s) | 141, 494, 533 |
| GluI | GCNGC | 1 cut(s) | 462 |
| Hin1II | CATG | 2 cut(s) | 98, 325 |
| HindIII | AAGCTT | 1 cut(s) | 474 |
| HinfI | GANTC | 3 cut(s) | 69, 293, 556 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 89, 322 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 379 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 467 |
| HpyF3I | CTNAG | 1 cut(s) | 551 |
| Hsp92II | CATG | 2 cut(s) | 98, 325 |
| Kzo9I | GATC | 1 cut(s) | 76 |
| LpnPI | CCDG | 2 cut(s) | 51, 75 |
| Lsp1109I | GCAGC | 1 cut(s) | 448 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 3 cut(s) | 141, 494, 533 |
| MalI | GATC | 1 cut(s) | 78 |
| MboI | GATC | 1 cut(s) | 76 |
| MboII | GAAGA | 3 cut(s) | 26, 53, 317 |
| MfeI | CAATTG | 1 cut(s) | 201 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MluCI | AATT | 5 cut(s) | 201, 243, 308, 356, 361 |
| MmeI | TCCRAC | 1 cut(s) | 409 |
| MnlI | CCTC | 2 cut(s) | 175, 188 |
| MseI | TTAA | 4 cut(s) | 23, 108, 242, 359 |
| MspCI | CTTAAG | 1 cut(s) | 107 |
| MunI | CAATTG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 467 |
| NdeII | GATC | 1 cut(s) | 76 |
| NheI | GCTAGC | 1 cut(s) | 493 |
| NlaIII | CATG | 2 cut(s) | 98, 325 |
| PagI | TCATGA | 1 cut(s) | 321 |
| PfeI | GAWTC | 3 cut(s) | 69, 293, 556 |
| PkrI | GCNGC | 1 cut(s) | 463 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| SaqAI | TTAA | 4 cut(s) | 23, 108, 242, 359 |
| SatI | GCNGC | 1 cut(s) | 462 |
| Sau3AI | GATC | 1 cut(s) | 76 |
| SbfI | CCTGCAGG | 1 cut(s) | 67 |
| SdaI | CCTGCAGG | 1 cut(s) | 67 |
| SetI | ASST | 8 cut(s) | 64, 118, 148, 199, 438, 478, 488, 546 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SmlI | CTYRAG | 2 cut(s) | 107, 252 |
| SmoI | CTYRAG | 2 cut(s) | 107, 252 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 67 |
| Sse9I | AATT | 5 cut(s) | 201, 243, 308, 356, 361 |
| SspMI | CTAG | 3 cut(s) | 141, 494, 533 |
| TasI | AATT | 5 cut(s) | 201, 243, 308, 356, 361 |
| TfiI | GAWTC | 3 cut(s) | 69, 293, 556 |
| Tru1I | TTAA | 4 cut(s) | 23, 108, 242, 359 |
| Tru9I | TTAA | 4 cut(s) | 23, 108, 242, 359 |
| TseI | GCWGC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 3 cut(s) | 61, 285, 338 |
| Vha464I | CTTAAG | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XspI | CTAG | 3 cut(s) | 141, 494, 533 |