Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 78 | 2.8e-11 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 215 - 294 | 4.8e-22 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 333 - 390 | 1.5e-12 | GAG-pre-integrase domain |
| rve | PF00665 | 405 - 506 | 8e-14 | Integrase core domain |
| SH3_retrovirus | PF25597 | 580 - 643 | 3.6e-20 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 751 - 995 | 1.1e-80 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 903 |
| Acc65I | GGTACC | 1 cut(s) | 1820 |
| AccB1I | GGYRCC | 2 cut(s) | 1820, 2629 |
| AclWI | GGATC | 2 cut(s) | 921, 2026 |
| AcuI | CTGAAG | 2 cut(s) | 1953, 2957 |
| AfaI | GTAC | 6 cut(s) | 828, 1822, 1845, 2711, 2720, 2974 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 2297, 2872, 2890 |
| AjnI | CCWGG | 5 cut(s) | 829, 939, 1708, 1759, 2639 |
| AleI | CACNNNNGTG | 1 cut(s) | 1631 |
| Alw21I | GWGCWC | 2 cut(s) | 876, 1162 |
| Alw26I | GTCTC | 6 cut(s) | 1085, 2034, 2095, 2405, 2721, 3113 |
| Alw44I | GTGCAC | 1 cut(s) | 1158 |
| AlwI | GGATC | 2 cut(s) | 921, 2026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2060 |
| Ama87I | CYCGRG | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 2637 |
| ApaLI | GTGCAC | 1 cut(s) | 1158 |
| ApeKI | GCWGC | 6 cut(s) | 146, 553, 1117, 2192, 2465, 3101 |
| AseI | ATTAAT | 1 cut(s) | 54 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1185, 2942 |
| Asp718I | GGTACC | 1 cut(s) | 1820 |
| AspA2I | CCTAGG | 1 cut(s) | 2633 |
| AspS9I | GGNCC | 2 cut(s) | 1250, 2637 |
| AsuC2I | CCSGG | 1 cut(s) | 2394 |
| AsuHPI | GGTGA | 7 cut(s) | 86, 386, 2081, 2281, 2314, 2660, 3230 |
| AvaI | CYCGRG | 1 cut(s) | 286 |
| AvaII | GGWCC | 1 cut(s) | 1250 |
| AvrII | CCTAGG | 1 cut(s) | 2633 |
| BaeGI | GKGCMC | 1 cut(s) | 1162 |
| BanI | GGYRCC | 2 cut(s) | 1820, 2629 |
| BbsI | GAAGAC | 2 cut(s) | 1959, 2281 |
| Bbv12I | GWGCWC | 2 cut(s) | 876, 1162 |
| BbvI | GCAGC | 6 cut(s) | 158, 565, 1104, 2179, 2477, 3088 |
| BccI | CCATC | 8 cut(s) | 1099, 1558, 1902, 2018, 2330, 2552, 2759, 3005 |
| BciT130I | CCWGG | 5 cut(s) | 831, 941, 1710, 1761, 2641 |
| BciVI | GTATCC | 2 cut(s) | 2758, 3233 |
| BclI | TGATCA | 2 cut(s) | 777, 2739 |
| BcnI | CCSGG | 1 cut(s) | 2394 |
| BcoDI | GTCTC | 6 cut(s) | 1085, 2034, 2095, 2405, 2721, 3113 |
| BfaI | CTAG | 7 cut(s) | 1878, 2361, 2495, 2634, 3081, 3113, 3256 |
| BfmI | CTRYAG | 3 cut(s) | 741, 1956, 2951 |
| BfuI | GTATCC | 2 cut(s) | 2758, 3233 |
| BglII | AGATCT | 4 cut(s) | 79, 688, 2139, 2842 |
| BisI | GCNGC | 6 cut(s) | 147, 554, 1118, 2193, 2466, 3102 |
| BlnI | CCTAGG | 1 cut(s) | 2633 |
| BlsI | GCNGC | 6 cut(s) | 148, 555, 1119, 2194, 2467, 3103 |
| BmcAI | AGTACT | 1 cut(s) | 2974 |
| Bme1390I | CCNGG | 6 cut(s) | 831, 941, 1710, 1761, 2394, 2641 |
| Bme18I | GGWCC | 1 cut(s) | 1250 |
| BmeT110I | CYCGRG | 1 cut(s) | 286 |
| BmgT120I | GGNCC | 2 cut(s) | 1250, 2637 |
| BmiI | GGNNCC | 5 cut(s) | 1182, 1218, 1822, 2631, 2985 |
| BmrFI | CCNGG | 6 cut(s) | 831, 941, 1710, 1761, 2394, 2641 |
| BmrI | ACTGGG | 2 cut(s) | 1172, 1924 |
| BmsI | GCATC | 2 cut(s) | 175, 2700 |
| BmuI | ACTGGG | 2 cut(s) | 1172, 1924 |
| BpiI | GAAGAC | 2 cut(s) | 1959, 2281 |
| BpmI | CTGGAG | 3 cut(s) | 447, 636, 2037 |
| BpuEI | CTTGAG | 1 cut(s) | 2152 |
| BpuMI | CCSGG | 1 cut(s) | 2394 |
| BsaAI | YACGTR | 1 cut(s) | 125 |
| BsaI | GGTCTC | 2 cut(s) | 2034, 2095 |
| BsaJI | CCNNGG | 6 cut(s) | 287, 1383, 1709, 1760, 2633, 2866 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 2297, 2872, 2890 |
| Bse1I | ACTGG | 7 cut(s) | 270, 430, 592, 1167, 1919, 2466, 2782 |
| Bse3DI | GCAATG | 1 cut(s) | 2226 |
| BseBI | CCWGG | 5 cut(s) | 831, 941, 1710, 1761, 2641 |
| BseDI | CCNNGG | 6 cut(s) | 287, 1383, 1709, 1760, 2633, 2866 |
| BseGI | GGATG | 9 cut(s) | 199, 665, 677, 916, 1246, 2206, 2233, 2341, 2806 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 2297, 2872, 2890 |
| BseMI | GCAATG | 1 cut(s) | 2226 |
| BseMII | CTCAG | 8 cut(s) | 74, 861, 2108, 2111, 2295, 2880, 2990, 3050 |
| BseNI | ACTGG | 7 cut(s) | 270, 430, 592, 1167, 1919, 2466, 2782 |
| BseRI | GAGGAG | 2 cut(s) | 1449, 1452 |
| BseSI | GKGCMC | 1 cut(s) | 1162 |
| BseXI | GCAGC | 6 cut(s) | 158, 565, 1104, 2179, 2477, 3088 |
| BseYI | CCCAGC | 1 cut(s) | 1323 |
| BsgI | GTGCAG | 3 cut(s) | 572, 1046, 2178 |
| BshFI | GGCC | 1 cut(s) | 2639 |
| BshNI | GGYRCC | 2 cut(s) | 1820, 2629 |
| BsiHKAI | GWGCWC | 2 cut(s) | 876, 1162 |
| BsiHKCI | CYCGRG | 1 cut(s) | 286 |
| BsiSI | CCGG | 1 cut(s) | 2394 |
| BslFI | GGGAC | 4 cut(s) | 269, 873, 1925, 3117 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 2297, 2872, 2890 |
| BsmAI | GTCTC | 6 cut(s) | 1085, 2034, 2095, 2405, 2721, 3113 |
| BsmFI | GGGAC | 4 cut(s) | 269, 873, 1925, 3117 |
| BsnI | GGCC | 1 cut(s) | 2639 |
| Bso31I | GGTCTC | 2 cut(s) | 2034, 2095 |
| BsoBI | CYCGRG | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 2 cut(s) | 876, 1162 |
| Bsp1407I | TGTACA | 1 cut(s) | 2709 |
| Bsp19I | CCATGG | 1 cut(s) | 1383 |
| BspANI | GGCC | 1 cut(s) | 2639 |
| BspCNI | CTCAG | 8 cut(s) | 75, 862, 2109, 2110, 2294, 2881, 2991, 3049 |
| BspHI | TCATGA | 1 cut(s) | 2005 |
| BspLI | GGNNCC | 5 cut(s) | 1182, 1218, 1822, 2631, 2985 |
| BspMAI | CTGCAG | 1 cut(s) | 1960 |
| BspPI | GGATC | 2 cut(s) | 921, 2026 |
| BspQI | GCTCTTC | 1 cut(s) | 59 |
| BspT107I | GGYRCC | 2 cut(s) | 1820, 2629 |
| BspTNI | GGTCTC | 2 cut(s) | 2034, 2095 |
| BsrDI | GCAATG | 1 cut(s) | 2226 |
| BsrGI | TGTACA | 1 cut(s) | 2709 |
| BsrI | ACTGG | 7 cut(s) | 270, 430, 592, 1167, 1919, 2466, 2782 |
| BssECI | CCNNGG | 6 cut(s) | 287, 1383, 1709, 1760, 2633, 2866 |
| BssT1I | CCWWGG | 3 cut(s) | 1383, 2633, 2866 |
| Bst2UI | CCWGG | 5 cut(s) | 831, 941, 1710, 1761, 2641 |
| Bst6I | CTCTTC | 4 cut(s) | 59, 2526, 2937, 2998 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2426 |
| BstAUI | TGTACA | 1 cut(s) | 2709 |
| BstBAI | YACGTR | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 1008 |
| BstDSI | CCRYGG | 1 cut(s) | 1383 |
| BstF5I | GGATG | 9 cut(s) | 199, 665, 677, 916, 1246, 2206, 2233, 2341, 2806 |
| BstMAI | GTCTC | 6 cut(s) | 1085, 2034, 2095, 2405, 2721, 3113 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 2426, 2636, 3032 |
| BstNI | CCWGG | 5 cut(s) | 831, 941, 1710, 1761, 2641 |
| BstNSI | RCATGY | 1 cut(s) | 560 |
| BstSCI | CCNGG | 6 cut(s) | 829, 939, 1708, 1759, 2392, 2639 |
| BstSFI | CTRYAG | 3 cut(s) | 741, 1956, 2951 |
| BstSLI | GKGCMC | 1 cut(s) | 1162 |
| BstSNI | TACGTA | 1 cut(s) | 125 |
| BstV1I | GCAGC | 6 cut(s) | 158, 565, 1104, 2179, 2477, 3088 |
| BstV2I | GAAGAC | 2 cut(s) | 1959, 2281 |
| BstX2I | RGATCY | 6 cut(s) | 79, 688, 926, 2018, 2139, 2842 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2867 |
| BstYI | RGATCY | 6 cut(s) | 79, 688, 926, 2018, 2139, 2842 |
| BsuI | GTATCC | 2 cut(s) | 2758, 3233 |
| BsuRI | GGCC | 1 cut(s) | 2639 |
| BtgI | CCRYGG | 1 cut(s) | 1383 |
| BtsCI | GGATG | 9 cut(s) | 199, 665, 677, 916, 1246, 2206, 2233, 2341, 2806 |
| BtsI | GCAGTG | 2 cut(s) | 156, 1671 |
| Cac8I | GCNNGC | 1 cut(s) | 1008 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2060 |
| CciI | TCATGA | 1 cut(s) | 2005 |
| Cfr13I | GGNCC | 2 cut(s) | 1250, 2637 |
| CsiI | ACCWGGT | 2 cut(s) | 829, 939 |
| Csp6I | GTAC | 6 cut(s) | 827, 1821, 1844, 2710, 2719, 2973 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 373, 408 |
| CviAII | CATG | 8 cut(s) | 239, 557, 1384, 1576, 1798, 1901, 2006, 2259 |
| CviQI | GTAC | 6 cut(s) | 827, 1821, 1844, 2710, 2719, 2973 |
| DraI | TTTAAA | 1 cut(s) | 1378 |
| Eam1104I | CTCTTC | 4 cut(s) | 59, 2526, 2937, 2998 |
| EarI | CTCTTC | 4 cut(s) | 59, 2526, 2937, 2998 |
| Eco105I | TACGTA | 1 cut(s) | 125 |
| Eco130I | CCWWGG | 3 cut(s) | 1383, 2633, 2866 |
| Eco31I | GGTCTC | 2 cut(s) | 2034, 2095 |
| Eco47I | GGWCC | 1 cut(s) | 1250 |
| Eco57I | CTGAAG | 2 cut(s) | 1953, 2957 |
| Eco88I | CYCGRG | 1 cut(s) | 286 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2637 |
| EcoRII | CCWGG | 5 cut(s) | 829, 939, 1708, 1759, 2639 |
| EcoT14I | CCWWGG | 3 cut(s) | 1383, 2633, 2866 |
| EcoT22I | ATGCAT | 1 cut(s) | 3129 |
| ErhI | CCWWGG | 3 cut(s) | 1383, 2633, 2866 |
| FaeI | CATG | 8 cut(s) | 242, 560, 1387, 1579, 1801, 1904, 2009, 2262 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 678, 710, 807, 839, 3174, 3206 |
| FaqI | GGGAC | 4 cut(s) | 269, 873, 1925, 3117 |
| FatI | CATG | 8 cut(s) | 238, 556, 1383, 1575, 1797, 1900, 2005, 2258 |
| FauNDI | CATATG | 1 cut(s) | 672 |
| FbaI | TGATCA | 2 cut(s) | 777, 2739 |
| Fnu4HI | GCNGC | 6 cut(s) | 147, 554, 1118, 2193, 2466, 3102 |
| FokI | GGATG | 9 cut(s) | 206, 664, 672, 923, 1253, 2213, 2240, 2348, 2813 |
| Fsp4HI | GCNGC | 6 cut(s) | 147, 554, 1118, 2193, 2466, 3102 |
| FspBI | CTAG | 7 cut(s) | 1878, 2361, 2495, 2634, 3081, 3113, 3256 |
| GluI | GCNGC | 6 cut(s) | 147, 554, 1118, 2193, 2466, 3102 |
| GsaI | CCCAGC | 1 cut(s) | 1327 |
| GsuI | CTGGAG | 3 cut(s) | 447, 636, 2037 |
| HaeIII | GGCC | 1 cut(s) | 2639 |
| HapII | CCGG | 1 cut(s) | 2394 |
| Hin1II | CATG | 8 cut(s) | 242, 560, 1387, 1579, 1801, 1904, 2009, 2262 |
| HindIII | AAGCTT | 2 cut(s) | 2205, 2607 |
| HpaII | CCGG | 1 cut(s) | 2394 |
| HphI | GGTGA | 7 cut(s) | 86, 386, 2081, 2281, 2314, 2660, 3230 |
| Hpy166II | GTNNAC | 6 cut(s) | 122, 562, 1160, 1624, 2593, 2712 |
| Hpy8I | GTNNAC | 6 cut(s) | 122, 562, 1160, 1624, 2593, 2712 |
| HpyAV | CCTTC | 7 cut(s) | 755, 760, 1306, 1720, 2009, 2218, 3215 |
| HpyCH4IV | ACGT | 1 cut(s) | 124 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 2426, 2636, 3032 |
| HpySE526I | ACGT | 1 cut(s) | 124 |
| Hsp92II | CATG | 8 cut(s) | 242, 560, 1387, 1579, 1801, 1904, 2009, 2262 |
| KpnI | GGTACC | 1 cut(s) | 1824 |
| Ksp22I | TGATCA | 2 cut(s) | 777, 2739 |
| LguI | GCTCTTC | 1 cut(s) | 59 |
| LmnI | GCTCC | 2 cut(s) | 381, 1003 |
| Lsp1109I | GCAGC | 6 cut(s) | 158, 565, 1104, 2179, 2477, 3088 |
| LweI | GCATC | 2 cut(s) | 175, 2700 |
| MabI | ACCWGGT | 2 cut(s) | 829, 939 |
| MaeI | CTAG | 7 cut(s) | 1878, 2361, 2495, 2634, 3081, 3113, 3256 |
| MaeII | ACGT | 1 cut(s) | 124 |
| MaeIII | GTNAC | 9 cut(s) | 320, 365, 494, 503, 665, 878, 1089, 2153, 3251 |
| MfeI | CAATTG | 2 cut(s) | 1503, 1554 |
| MflI | RGATCY | 6 cut(s) | 79, 688, 926, 2018, 2139, 2842 |
| MhlI | GDGCHC | 2 cut(s) | 876, 1162 |
| MlyI | GAGTC | 3 cut(s) | 1105, 1660, 1973 |
| MmeI | TCCRAC | 2 cut(s) | 210, 1956 |
| Mph1103I | ATGCAT | 1 cut(s) | 3129 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1185, 2942 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1239, 1631 |
| MspI | CCGG | 1 cut(s) | 2394 |
| MspR9I | CCNGG | 6 cut(s) | 831, 941, 1710, 1761, 2394, 2641 |
| MunI | CAATTG | 2 cut(s) | 1503, 1554 |
| MvaI | CCWGG | 5 cut(s) | 831, 941, 1710, 1761, 2641 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 2426, 2636, 3032 |
| NciI | CCSGG | 1 cut(s) | 2394 |
| NcoI | CCATGG | 1 cut(s) | 1383 |
| NdeI | CATATG | 1 cut(s) | 672 |
| NlaIII | CATG | 8 cut(s) | 242, 560, 1387, 1579, 1801, 1904, 2009, 2262 |
| NlaIV | GGNNCC | 5 cut(s) | 1182, 1218, 1822, 2631, 2985 |
| NmuCI | GTSAC | 3 cut(s) | 494, 2153, 3251 |
| NsiI | ATGCAT | 1 cut(s) | 3129 |
| NspI | RCATGY | 1 cut(s) | 560 |
| OliI | CACNNNNGTG | 1 cut(s) | 1631 |
| PagI | TCATGA | 1 cut(s) | 2005 |
| PciSI | GCTCTTC | 1 cut(s) | 59 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1185, 2942 |
| PfeI | GAWTC | 8 cut(s) | 14, 396, 1196, 1765, 1849, 2000, 2072, 2177 |
| PkrI | GCNGC | 6 cut(s) | 148, 555, 1119, 2194, 2467, 3103 |
| PleI | GAGTC | 3 cut(s) | 1104, 1659, 1972 |
| PpsI | GAGTC | 3 cut(s) | 1104, 1659, 1972 |
| Ppu21I | YACGTR | 1 cut(s) | 125 |
| PshBI | ATTAAT | 1 cut(s) | 54 |
| PsiI | TTATAA | 1 cut(s) | 903 |
| Psp6I | CCWGG | 5 cut(s) | 829, 939, 1708, 1759, 2639 |
| PspFI | CCCAGC | 1 cut(s) | 1323 |
| PspGI | CCWGG | 5 cut(s) | 829, 939, 1708, 1759, 2639 |
| PspN4I | GGNNCC | 5 cut(s) | 1182, 1218, 1822, 2631, 2985 |
| PspPI | GGNCC | 2 cut(s) | 1250, 2637 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2440, 2472 |
| PstI | CTGCAG | 1 cut(s) | 1960 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2060 |
| PsuI | RGATCY | 6 cut(s) | 79, 688, 926, 2018, 2139, 2842 |
| RsaI | GTAC | 6 cut(s) | 828, 1822, 1845, 2711, 2720, 2974 |
| RsaNI | GTAC | 6 cut(s) | 827, 1821, 1844, 2710, 2719, 2973 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1239, 1631 |
| SapI | GCTCTTC | 1 cut(s) | 59 |
| SatI | GCNGC | 6 cut(s) | 147, 554, 1118, 2193, 2466, 3102 |
| Sau96I | GGNCC | 2 cut(s) | 1250, 2637 |
| ScaI | AGTACT | 1 cut(s) | 2974 |
| SchI | GAGTC | 3 cut(s) | 1105, 1660, 1973 |
| ScrFI | CCNGG | 6 cut(s) | 831, 941, 1710, 1761, 2394, 2641 |
| SduI | GDGCHC | 2 cut(s) | 876, 1162 |
| SexAI | ACCWGGT | 2 cut(s) | 829, 939 |
| SfaNI | GCATC | 2 cut(s) | 175, 2700 |
| SfcI | CTRYAG | 3 cut(s) | 741, 1956, 2951 |
| SinI | GGWCC | 1 cut(s) | 1250 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1239, 1631 |
| SmlI | CTYRAG | 1 cut(s) | 2131 |
| SmoI | CTYRAG | 1 cut(s) | 2131 |
| SnaBI | TACGTA | 1 cut(s) | 125 |
| SspMI | CTAG | 7 cut(s) | 1878, 2361, 2495, 2634, 3081, 3113, 3256 |
| StyD4I | CCNGG | 6 cut(s) | 829, 939, 1708, 1759, 2392, 2639 |
| StyI | CCWWGG | 3 cut(s) | 1383, 2633, 2866 |
| TaiI | ACGT | 1 cut(s) | 127 |
| TaqI | TCGA | 3 cut(s) | 799, 918, 2244 |
| TaqII | GACCGA | 1 cut(s) | 1049 |
| TatI | WGTACW | 3 cut(s) | 2709, 2718, 2972 |
| TfiI | GAWTC | 8 cut(s) | 14, 396, 1196, 1765, 1849, 2000, 2072, 2177 |
| TseFI | GTSAC | 3 cut(s) | 494, 2153, 3251 |
| TseI | GCWGC | 6 cut(s) | 146, 553, 1117, 2192, 2465, 3101 |
| Tsp45I | GTSAC | 3 cut(s) | 494, 2153, 3251 |
| VneI | GTGCAC | 1 cut(s) | 1158 |
| VpaK11BI | GGWCC | 1 cut(s) | 1250 |
| VspI | ATTAAT | 1 cut(s) | 54 |
| XbaI | TCTAGA | 1 cut(s) | 1877 |
| XceI | RCATGY | 1 cut(s) | 560 |
| XmaJI | CCTAGG | 1 cut(s) | 2633 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1185, 2942 |
| XspI | CTAG | 7 cut(s) | 1878, 2361, 2495, 2634, 3081, 3113, 3256 |
| ZrmI | AGTACT | 1 cut(s) | 2974 |
| Zsp2I | ATGCAT | 1 cut(s) | 3129 |