FvH4_1g19622

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000154
Physical Location & Seq
Forward (+)
11852786 .. 11854108
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19622.t1

Sequence Viewer

Length: 504 bp
ATGGAGTTATGTACAAGAGGAATGGGAGTGAGAAGCTTGAAGCATACTCGGACAGTGATTATGCAGGAGATTTGGATGATCGTAGGAGCACGTCAGGATATGCCTTCATGCTTAGCAGTGGTGCAGTTTCATGGTCTTCCAAAAAAGCAGTCAGTTGTCACTTTATCAACCACAGAGGCCAAGTTTATTTCTGCAGCAGCTTGTGCTTGTCAAGCCATATGGATGCGTAGAGTTCTAGAGAAACTTGGCCATGTTCAGAGAGAGGGTACTATTATATATTGTGACAACAGCTCAGCTATAAAGCTATCAAGAAATCCGGTGTTGCACGGGAGGAGCAAACATATAGACGTACGGTTCCATTTTCTTCGAGATCTCACAAAGGAAGGAGCTGTCAAGTTAGTTCATTGTAGTTCTCAAGCTCAAGTTGCTGATATTATGACGAAGCCACTGAAGCTAGAGTCCTTTGAGAAGCTGCGTGGGGAGTGTGTAAGATGCCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.81

Weight (kDa)

9.58

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 3 cut(s) 13, 268, 351
AgsI TTSAA 1 cut(s) 40
AjiI CACGTC 1 cut(s) 92
AluBI AGCT 9 cut(s) 36, 200, 291, 296, 304, 389, 419, 454, 472
AluI AGCT 9 cut(s) 36, 200, 291, 296, 304, 389, 419, 454, 472
Alw21I GWGCWC 1 cut(s) 91
AoxI GGCC 2 cut(s) 177, 247
ApeKI GCWGC 3 cut(s) 194, 197, 472
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
BalI TGGCCA 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 206, 209, 459
BfaI CTAG 2 cut(s) 236, 455
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 370
BisI GCNGC 3 cut(s) 195, 198, 473
BlpI GCTNAGC 2 cut(s) 112, 292
BlsI GCNGC 3 cut(s) 196, 199, 474
BmgBI CACGTC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 356
BmsI GCATC 2 cut(s) 213, 482
BpiI GAAGAC 1 cut(s) 128
Bpu1102I GCTNAGC 2 cut(s) 112, 292
BpuEI CTTGAG 2 cut(s) 399, 405
BsaWI WCCGGW 1 cut(s) 316
BseGI GGATG 2 cut(s) 81, 228
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 3 cut(s) 206, 209, 459
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 2 cut(s) 179, 249
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 317
BsiWI CGTACG 1 cut(s) 349
BsnI GGCC 2 cut(s) 179, 249
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 78, 370
Bsp1720I GCTNAGC 2 cut(s) 112, 292
BspANI GGCC 2 cut(s) 179, 249
BspCNI CTCAG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 11
BssMI GATC 2 cut(s) 78, 370
Bst4CI ACNGT 2 cut(s) 55, 354
BstAPI GCANNNNNTGC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 112, 292
BstF5I GGATG 2 cut(s) 81, 228
BstKTI GATC 2 cut(s) 81, 373
BstMBI GATC 2 cut(s) 78, 370
BstMWI GCNNNNNNNGC 4 cut(s) 203, 212, 425, 451
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 206, 209, 459
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 2 cut(s) 179, 249
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 81, 228
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 60, 123, 446
Csp6I GTAC 3 cut(s) 12, 267, 350
CviAII CATG 3 cut(s) 108, 131, 251
CviQI GTAC 3 cut(s) 12, 267, 350
DdeI CTNAG 2 cut(s) 112, 292
DpnI GATC 2 cut(s) 80, 372
DpnII GATC 2 cut(s) 78, 370
EaeI YGGCCR 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 470
FaeI CATG 3 cut(s) 111, 134, 254
FatI CATG 3 cut(s) 107, 130, 250
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 3 cut(s) 195, 198, 473
FokI GGATG 2 cut(s) 88, 235
Fsp4HI GCNGC 3 cut(s) 195, 198, 473
FspBI CTAG 2 cut(s) 236, 455
GluI GCNGC 3 cut(s) 195, 198, 473
HaeIII GGCC 2 cut(s) 179, 249
HapII CCGG 1 cut(s) 317
Hin1II CATG 3 cut(s) 111, 134, 254
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 458
HpaII CCGG 1 cut(s) 317
Hpy188I TCNGA 2 cut(s) 51, 258
Hpy188III TCNNGA 4 cut(s) 95, 236, 309, 368
HpyAV CCTTC 2 cut(s) 114, 377
HpyCH4III ACNGT 2 cut(s) 55, 354
HpyCH4IV ACGT 2 cut(s) 91, 348
HpyCH4V TGCA 4 cut(s) 64, 124, 194, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 212, 425, 451
HpyF3I CTNAG 2 cut(s) 112, 292
HpySE526I ACGT 2 cut(s) 91, 348
Hsp92II CATG 3 cut(s) 111, 134, 254
Kzo9I GATC 2 cut(s) 78, 370
LmnI GCTCC 3 cut(s) 86, 333, 386
LpnPI CCDG 3 cut(s) 50, 80, 330
Lsp1109I GCAGC 3 cut(s) 206, 209, 459
LweI GCATC 2 cut(s) 213, 482
MaeI CTAG 2 cut(s) 236, 455
MaeII ACGT 2 cut(s) 91, 348
MaeIII GTNAC 2 cut(s) 157, 281
MalI GATC 2 cut(s) 80, 372
MboI GATC 2 cut(s) 78, 370
MboII GAAGA 2 cut(s) 128, 356
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 4 cut(s) 11, 169, 256, 324
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 502
MslI CAYNNNNRTG 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 203, 212, 425, 451
NdeI CATATG 1 cut(s) 218
NdeII GATC 2 cut(s) 78, 370
NlaIII CATG 3 cut(s) 111, 134, 254
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 157, 281
Pfl23II CGTACG 1 cut(s) 349
PkrI GCNGC 3 cut(s) 196, 199, 474
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspLI CGTACG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 3 cut(s) 13, 268, 351
RsaNI GTAC 3 cut(s) 12, 267, 350
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 3 cut(s) 195, 198, 473
Sau3AI GATC 2 cut(s) 78, 370
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 2 cut(s) 213, 482
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 414, 420
SmoI CTYRAG 2 cut(s) 414, 420
SspMI CTAG 2 cut(s) 236, 455
TaaI ACNGT 2 cut(s) 55, 354
TaiI ACGT 2 cut(s) 94, 351
TaqI TCGA 1 cut(s) 367
TatI WGTACW 1 cut(s) 11
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 3 cut(s) 60, 123, 453
TseFI GTSAC 2 cut(s) 157, 281
TseI GCWGC 3 cut(s) 194, 197, 472
Tsp45I GTSAC 2 cut(s) 157, 281
TspDTI ATGAA 3 cut(s) 96, 119, 392
TspRI CASTG 3 cut(s) 60, 123, 453
XbaI TCTAGA 1 cut(s) 235
XspI CTAG 2 cut(s) 236, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.