FvH4_6g48811

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000154
Physical Location & Seq
Reverse (-)
36679957 .. 36680715
759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48811.t1

Sequence Viewer

Length: 759 bp
ATGTCAAGCCAGTTCGCAATGAAGGATTTGGGTGAGGCGAAGAAAATCTTAGGAATAAAGATTATTCGTGATAAAGTGGCTGGTACTCTGAAGCTTTCACAAGCAGAGTATGTTGAGAAGGTGCTTGGGCGATTTAATATGGATGAATCGAAGCCTGTAGGAACACCGTTGGCGGCTCACTTTAAATTGTCAAGGGAACAATCACCCAAGGGCAAAAAAGAAAAGGAATATATGAAGAATGTACCTTATGCGTCGGCAGTTGGATGCTTAATGTATGCTATGGTGTGTACTAGACCCGATATTGCTCATGCGGTGGGAGTTGTGAGTAGGTACACGAGTAATCCAGGGAAGCAACATTGGGAGGCTGTGAAATGGATCATGAGGTATCTTCGGGGTACTACTAATATGTCTCTTTGTTTTAAGAGAGGTAGTACTGAACTACAAGGGTATGTGGATGCAAACTTGGCAGGATGTAACGATACTTATCGGAGTACTACTGGTTATGTGTATACTGTGGGTGGTGCTGCCATATCTTGGGTCTCAAATTTGCAAGGGCATGTGGTCTTGTCCACAACAGAGCTAGAGTATGTAGCAGTTTTGGAGGCTGGCAAGGAGATGGTGTGGCTAAAGGGTCTGTTGGAAGAATTGGGCAAAATGCCAGAGAATTGTGCGTTGCACTGTGATAGTCAAAGTGCAATTCACCTGGCAAAGAACCCTGCGTTTCATTCAAGGACTAAAGTACTAAACACATTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

253

Amino Acids

27.89

Weight (kDa)

9.18

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 58 3.3e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AccI GTMKAC 1 cut(s) 509
AciI CCGC 2 cut(s) 173, 311
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 8 cut(s) 85, 243, 289, 332, 397, 433, 493, 741
AfiI CCNNNNNNNGG 1 cut(s) 534
AgsI TTSAA 1 cut(s) 729
AjnI CCWGG 2 cut(s) 343, 702
AluBI AGCT 2 cut(s) 94, 580
AluI AGCT 2 cut(s) 94, 580
Alw26I GTCTC 2 cut(s) 414, 544
AlwI GGATC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 544
AsuHPI GGTGA 3 cut(s) 44, 195, 692
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BauI CACGAG 1 cut(s) 334
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 610
BciT130I CCWGG 2 cut(s) 345, 704
BcoDI GTCTC 2 cut(s) 414, 544
BfaI CTAG 2 cut(s) 291, 581
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 174, 525
BlsI GCNGC 2 cut(s) 175, 526
BmcAI AGTACT 3 cut(s) 433, 493, 741
Bme1390I CCNGG 2 cut(s) 345, 704
BmrFI CCNGG 2 cut(s) 345, 704
BmsI GCATC 2 cut(s) 254, 445
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 2 cut(s) 207, 344
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 10, 502
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 345, 704
BseDI CCNNGG 2 cut(s) 207, 344
BseGI GGATG 4 cut(s) 148, 269, 460, 476
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 10, 502
BseXI GCAGC 1 cut(s) 511
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 2 cut(s) 414, 544
Bso31I GGTCTC 1 cut(s) 544
Bsp143I GATC 1 cut(s) 375
BspACI CCGC 2 cut(s) 173, 311
BspHI TCATGA 1 cut(s) 378
BspPI GGATC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 2 cut(s) 10, 502
BssECI CCNNGG 2 cut(s) 207, 344
BssMI GATC 1 cut(s) 375
BssNAI GTATAC 1 cut(s) 510
BssSI CACGAG 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 345, 704
Bst4CI ACNGT 3 cut(s) 168, 514, 680
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 148, 269, 460, 476
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 2 cut(s) 414, 544
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 2 cut(s) 345, 704
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 343, 702
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 510
BtsCI GGATG 4 cut(s) 148, 269, 460, 476
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 607
CciI TCATGA 1 cut(s) 378
CseI GACGC 1 cut(s) 240
Csp6I GTAC 8 cut(s) 84, 242, 288, 331, 396, 432, 492, 740
CviAII CATG 3 cut(s) 308, 379, 557
CviJI RGCY 9 cut(s) 9, 80, 94, 154, 176, 365, 580, 605, 625
CviKI_1 RGCY 9 cut(s) 9, 80, 94, 154, 176, 365, 580, 605, 625
CviQI GTAC 8 cut(s) 84, 242, 288, 331, 396, 432, 492, 740
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
DraI TTTAAA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 343, 702
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 311, 382, 560
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 3 cut(s) 307, 378, 556
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 2 cut(s) 174, 525
FokI GGATG 4 cut(s) 155, 276, 467, 483
Fsp4HI GCNGC 2 cut(s) 174, 525
FspBI CTAG 2 cut(s) 291, 581
GluI GCNGC 2 cut(s) 174, 525
HgaI GACGC 1 cut(s) 240
Hin1II CATG 3 cut(s) 311, 382, 560
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 146
HphI GGTGA 3 cut(s) 44, 195, 692
Hpy166II GTNNAC 4 cut(s) 288, 333, 510, 570
Hpy188I TCNGA 2 cut(s) 90, 489
Hpy188III TCNNGA 2 cut(s) 68, 379
Hpy8I GTNNAC 4 cut(s) 288, 333, 510, 570
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 16, 112
HpyCH4III ACNGT 3 cut(s) 168, 514, 680
HpyCH4V TGCA 4 cut(s) 458, 550, 676, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 3 cut(s) 311, 382, 560
Kzo9I GATC 1 cut(s) 375
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 2 cut(s) 254, 445
MaeI CTAG 2 cut(s) 291, 581
MaeIII GTNAC 1 cut(s) 473
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 4 cut(s) 52, 247, 380, 653
MluCI AATT 5 cut(s) 185, 544, 644, 664, 696
MmeI TCCRAC 2 cut(s) 241, 618
MnlI CCTC 5 cut(s) 28, 355, 375, 419, 595
MseI TTAA 4 cut(s) 135, 183, 269, 420
MslI CAYNNNNRTG 1 cut(s) 754
MspR9I CCNGG 2 cut(s) 345, 704
MvaI CCWGG 2 cut(s) 345, 704
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 1 cut(s) 375
NlaIII CATG 3 cut(s) 311, 382, 560
NspI RCATGY 1 cut(s) 560
PagI TCATGA 1 cut(s) 378
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 2 cut(s) 175, 526
Psp6I CCWGG 2 cut(s) 343, 702
PspGI CCWGG 2 cut(s) 343, 702
RsaI GTAC 8 cut(s) 85, 243, 289, 332, 397, 433, 493, 741
RsaNI GTAC 8 cut(s) 84, 242, 288, 331, 396, 432, 492, 740
RseI CAYNNNNRTG 1 cut(s) 754
SaqAI TTAA 4 cut(s) 135, 183, 269, 420
SatI GCNGC 2 cut(s) 174, 525
Sau3AI GATC 1 cut(s) 375
ScaI AGTACT 3 cut(s) 433, 493, 741
ScrFI CCNGG 2 cut(s) 345, 704
SetI ASST 8 cut(s) 96, 123, 247, 332, 386, 430, 582, 705
SfaNI GCATC 2 cut(s) 254, 445
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 754
Sse9I AATT 5 cut(s) 185, 544, 644, 664, 696
SsiI CCGC 2 cut(s) 173, 311
SspMI CTAG 2 cut(s) 291, 581
StyD4I CCNGG 2 cut(s) 343, 702
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 168, 514, 680
TaqI TCGA 1 cut(s) 149
TasI AATT 5 cut(s) 185, 544, 644, 664, 696
TatI WGTACW 4 cut(s) 287, 431, 491, 739
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 4 cut(s) 135, 183, 269, 420
Tru9I TTAA 4 cut(s) 135, 183, 269, 420
TscAI CASTG 1 cut(s) 683
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 4 cut(s) 35, 159, 248, 713
TspRI CASTG 1 cut(s) 683
Van91I CCANNNNNTGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 509
XspI CTAG 2 cut(s) 291, 581
ZrmI AGTACT 3 cut(s) 433, 493, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.