Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 59 - 209 | 2e-27 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 330 - 410 | 2.2e-25 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 450 - 504 | 2.1e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 519 - 617 | 6.6e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 691 - 755 | 1.7e-28 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 875 - 1119 | 4.4e-87 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2372 |
| Acc16I | TGCGCA | 2 cut(s) | 1238, 1963 |
| Acc36I | ACCTGC | 1 cut(s) | 2372 |
| AccB1I | GGYRCC | 1 cut(s) | 1616 |
| AccBSI | CCGCTC | 1 cut(s) | 514 |
| AccI | GTMKAC | 1 cut(s) | 1844 |
| AccIII | TCCGGA | 1 cut(s) | 2650 |
| AciI | CCGC | 4 cut(s) | 514, 1868, 2408, 2880 |
| AclWI | GGATC | 4 cut(s) | 137, 1262, 2537, 2727 |
| AcsI | RAATTY | 6 cut(s) | 44, 1411, 1426, 1924, 3573, 3795 |
| AcuI | CTGAAG | 3 cut(s) | 270, 365, 4058 |
| AcvI | CACGTG | 1 cut(s) | 695 |
| AdeI | CACNNNGTG | 1 cut(s) | 698 |
| AfaI | GTAC | 7 cut(s) | 113, 992, 1148, 2171, 2699, 3017, 3233 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1106, 1610 |
| AflIII | ACRYGT | 1 cut(s) | 271 |
| AjiI | CACGTC | 1 cut(s) | 2716 |
| AjnI | CCWGG | 2 cut(s) | 145, 2764 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 712, 744, 2236, 2268 |
| Alw21I | GWGCWC | 2 cut(s) | 2640, 3656 |
| Alw26I | GTCTC | 8 cut(s) | 144, 932, 1989, 2343, 2373, 2706, 3294, 3820 |
| AlwI | GGATC | 4 cut(s) | 137, 1262, 2537, 2727 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1952, 2399 |
| Aor13HI | TCCGGA | 1 cut(s) | 2650 |
| AoxI | GGCC | 7 cut(s) | 597, 881, 1180, 1542, 1710, 2429, 3455 |
| ApoI | RAATTY | 6 cut(s) | 44, 1411, 1426, 1924, 3573, 3795 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1614, 1646, 3452, 3484 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 189, 492, 3028 |
| AspLEI | GCGC | 2 cut(s) | 1239, 1964 |
| AsuC2I | CCSGG | 1 cut(s) | 1024 |
| AsuII | TTCGAA | 2 cut(s) | 193, 499 |
| AxyI | CCTNAGG | 1 cut(s) | 3658 |
| BanI | GGYRCC | 1 cut(s) | 1616 |
| BanII | GRGCYC | 2 cut(s) | 220, 2640 |
| BbrPI | CACGTG | 1 cut(s) | 695 |
| BbsI | GAAGAC | 2 cut(s) | 924, 2486 |
| Bbv12I | GWGCWC | 2 cut(s) | 2640, 3656 |
| BbvCI | CCTCAGC | 1 cut(s) | 1851 |
| BceAI | ACGGC | 3 cut(s) | 377, 1876, 3462 |
| BciT130I | CCWGG | 2 cut(s) | 147, 2766 |
| BclI | TGATCA | 2 cut(s) | 126, 306 |
| BcnI | CCSGG | 1 cut(s) | 1024 |
| BcoDI | GTCTC | 8 cut(s) | 144, 932, 1989, 2343, 2373, 2706, 3294, 3820 |
| BfaI | CTAG | 7 cut(s) | 1989, 2357, 2411, 2802, 3006, 3167, 3453 |
| BfmI | CTRYAG | 4 cut(s) | 476, 1243, 2149, 4020 |
| BfuAI | ACCTGC | 1 cut(s) | 2372 |
| BglII | AGATCT | 3 cut(s) | 553, 1119, 4069 |
| BlpI | GCTNAGC | 1 cut(s) | 2400 |
| Bme1390I | CCNGG | 3 cut(s) | 147, 1024, 2766 |
| BmgBI | CACGTC | 1 cut(s) | 2716 |
| BmiI | GGNNCC | 2 cut(s) | 1602, 1618 |
| BmrFI | CCNGG | 3 cut(s) | 147, 1024, 2766 |
| BmrI | ACTGGG | 1 cut(s) | 3637 |
| BmsI | GCATC | 7 cut(s) | 411, 1086, 1248, 1895, 2082, 3203, 3820 |
| BmuI | ACTGGG | 1 cut(s) | 3637 |
| BpiI | GAAGAC | 2 cut(s) | 924, 2486 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 692, 724, 1589, 1621, 3291, 3323 |
| BpmI | CTGGAG | 4 cut(s) | 2325, 2355, 3318, 3999 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1851 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2400 |
| Bpu14I | TTCGAA | 2 cut(s) | 193, 499 |
| BpuEI | CTTGAG | 6 cut(s) | 895, 1567, 1586, 1825, 2921, 3293 |
| BpuMI | CCSGG | 1 cut(s) | 1024 |
| Bsa29I | ATCGAT | 1 cut(s) | 1641 |
| BsaAI | YACGTR | 1 cut(s) | 695 |
| BsaBI | GATNNNNATC | 2 cut(s) | 125, 2541 |
| BsaI | GGTCTC | 3 cut(s) | 144, 1989, 3820 |
| BsaWI | WCCGGW | 3 cut(s) | 2185, 2650, 3349 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1106, 1610 |
| Bse1I | ACTGG | 7 cut(s) | 35, 826, 1100, 2005, 3154, 3632, 3881 |
| Bse21I | CCTNAGG | 1 cut(s) | 3658 |
| Bse3DI | GCAATG | 2 cut(s) | 647, 969 |
| Bse8I | GATNNNNATC | 2 cut(s) | 125, 2541 |
| BseAI | TCCGGA | 1 cut(s) | 2650 |
| BseBI | CCWGG | 2 cut(s) | 147, 2766 |
| BseCI | ATCGAT | 1 cut(s) | 1641 |
| BseGI | GGATG | 8 cut(s) | 580, 1101, 1149, 2299, 2602, 2875, 3701, 4059 |
| BseJI | GATNNNNATC | 2 cut(s) | 125, 2541 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1106, 1610 |
| BseMI | GCAATG | 2 cut(s) | 647, 969 |
| BseNI | ACTGG | 7 cut(s) | 35, 826, 1100, 2005, 3154, 3632, 3881 |
| BseRI | GAGGAG | 6 cut(s) | 557, 950, 1263, 2503, 2918, 3495 |
| BshFI | GGCC | 7 cut(s) | 599, 883, 1182, 1544, 1712, 2431, 3457 |
| BshNI | GGYRCC | 1 cut(s) | 1616 |
| BshVI | ATCGAT | 1 cut(s) | 1641 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2640, 3656 |
| BsiSI | CCGG | 5 cut(s) | 884, 1023, 2186, 2651, 3350 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1106, 1610 |
| BsmAI | GTCTC | 8 cut(s) | 144, 932, 1989, 2343, 2373, 2706, 3294, 3820 |
| BsmBI | CGTCTC | 1 cut(s) | 2706 |
| BsmI | GAATGC | 1 cut(s) | 1090 |
| BsnI | GGCC | 7 cut(s) | 599, 883, 1182, 1544, 1712, 2431, 3457 |
| Bso31I | GGTCTC | 3 cut(s) | 144, 1989, 3820 |
| Bsp119I | TTCGAA | 2 cut(s) | 193, 499 |
| Bsp1286I | GDGCHC | 3 cut(s) | 220, 2640, 3656 |
| Bsp13I | TCCGGA | 1 cut(s) | 2650 |
| Bsp1407I | TGTACA | 1 cut(s) | 1146 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2400 |
| BspACI | CCGC | 4 cut(s) | 514, 1868, 2408, 2880 |
| BspANI | GGCC | 7 cut(s) | 599, 883, 1182, 1544, 1712, 2431, 3457 |
| BspDI | ATCGAT | 1 cut(s) | 1641 |
| BspEI | TCCGGA | 1 cut(s) | 2650 |
| BspHI | TCATGA | 1 cut(s) | 3342 |
| BspLI | GGNNCC | 2 cut(s) | 1602, 1618 |
| BspMAI | CTGCAG | 2 cut(s) | 480, 4024 |
| BspMI | ACCTGC | 1 cut(s) | 2372 |
| BspPI | GGATC | 4 cut(s) | 137, 1262, 2537, 2727 |
| BspT104I | TTCGAA | 2 cut(s) | 193, 499 |
| BspT107I | GGYRCC | 1 cut(s) | 1616 |
| BspTNI | GGTCTC | 3 cut(s) | 144, 1989, 3820 |
| BsrBI | CCGCTC | 1 cut(s) | 514 |
| BsrDI | GCAATG | 2 cut(s) | 647, 969 |
| BsrGI | TGTACA | 1 cut(s) | 1146 |
| BsrI | ACTGG | 7 cut(s) | 35, 826, 1100, 2005, 3154, 3632, 3881 |
| BssNAI | GTATAC | 1 cut(s) | 1845 |
| Bst1107I | GTATAC | 1 cut(s) | 1845 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 2766 |
| Bst4CI | ACNGT | 7 cut(s) | 369, 571, 1131, 2158, 2815, 3593, 3971 |
| Bst6I | CTCTTC | 6 cut(s) | 98, 766, 772, 2328, 3633, 3818 |
| BstAUI | TGTACA | 1 cut(s) | 1146 |
| BstBAI | YACGTR | 1 cut(s) | 695 |
| BstBI | TTCGAA | 2 cut(s) | 193, 499 |
| BstC8I | GCNNGC | 3 cut(s) | 597, 1910, 3525 |
| BstF5I | GGATG | 8 cut(s) | 580, 1101, 1149, 2299, 2602, 2875, 3701, 4059 |
| BstHHI | GCGC | 2 cut(s) | 1239, 1964 |
| BstMAI | GTCTC | 8 cut(s) | 144, 932, 1989, 2343, 2373, 2706, 3294, 3820 |
| BstNI | CCWGG | 2 cut(s) | 147, 2766 |
| BstNSI | RCATGY | 3 cut(s) | 275, 1698, 1912 |
| BstSCI | CCNGG | 3 cut(s) | 145, 1022, 2764 |
| BstSFI | CTRYAG | 4 cut(s) | 476, 1243, 2149, 4020 |
| BstV2I | GAAGAC | 2 cut(s) | 924, 2486 |
| BstX2I | RGATCY | 5 cut(s) | 142, 553, 1119, 1267, 4069 |
| BstYI | RGATCY | 5 cut(s) | 142, 553, 1119, 1267, 4069 |
| BstZ17I | GTATAC | 1 cut(s) | 1845 |
| Bsu15I | ATCGAT | 1 cut(s) | 1641 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3658 |
| BsuRI | GGCC | 7 cut(s) | 599, 883, 1182, 1544, 1712, 2431, 3457 |
| BsuTUI | ATCGAT | 1 cut(s) | 1641 |
| BtgZI | GCGATG | 1 cut(s) | 2059 |
| BtrI | CACGTC | 1 cut(s) | 2716 |
| BtsCI | GGATG | 8 cut(s) | 580, 1101, 1149, 2299, 2602, 2875, 3701, 4059 |
| BtsIMutI | CAGTG | 3 cut(s) | 833, 1998, 3147 |
| BveI | ACCTGC | 1 cut(s) | 2372 |
| Cac8I | GCNNGC | 3 cut(s) | 597, 1910, 3525 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1952, 2399 |
| CciI | TCATGA | 1 cut(s) | 3342 |
| CfoI | GCGC | 2 cut(s) | 1239, 1964 |
| ClaI | ATCGAT | 1 cut(s) | 1641 |
| CsiI | ACCWGGT | 1 cut(s) | 2764 |
| Csp6I | GTAC | 7 cut(s) | 112, 991, 1147, 2170, 2698, 3016, 3232 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2222, 2257, 2442, 2477 |
| CviQI | GTAC | 7 cut(s) | 112, 991, 1147, 2170, 2698, 3016, 3232 |
| DraI | TTTAAA | 2 cut(s) | 1410, 3319 |
| DraIII | CACNNNGTG | 1 cut(s) | 698 |
| Eam1104I | CTCTTC | 6 cut(s) | 98, 766, 772, 2328, 3633, 3818 |
| EarI | CTCTTC | 6 cut(s) | 98, 766, 772, 2328, 3633, 3818 |
| Ecl136II | GAGCTC | 1 cut(s) | 2638 |
| Eco147I | AGGCCT | 5 cut(s) | 599, 1544, 1712, 2431, 3457 |
| Eco24I | GRGCYC | 2 cut(s) | 220, 2640 |
| Eco31I | GGTCTC | 3 cut(s) | 144, 1989, 3820 |
| Eco32I | GATATC | 2 cut(s) | 466, 928 |
| Eco53kI | GAGCTC | 1 cut(s) | 2638 |
| Eco57I | CTGAAG | 3 cut(s) | 270, 365, 4058 |
| Eco72I | CACGTG | 1 cut(s) | 695 |
| Eco81I | CCTNAGG | 1 cut(s) | 3658 |
| EcoICRI | GAGCTC | 1 cut(s) | 2638 |
| EcoRI | GAATTC | 1 cut(s) | 3795 |
| EcoRII | CCWGG | 2 cut(s) | 145, 2764 |
| EcoRV | GATATC | 2 cut(s) | 466, 928 |
| EcoT22I | ATGCAT | 1 cut(s) | 1910 |
| EcoT38I | GRGCYC | 2 cut(s) | 220, 2640 |
| Esp3I | CGTCTC | 1 cut(s) | 2706 |
| FauNDI | CATATG | 3 cut(s) | 1392, 1609, 3067 |
| FbaI | TGATCA | 2 cut(s) | 126, 306 |
| FblI | GTMKAC | 1 cut(s) | 1844 |
| FokI | GGATG | 8 cut(s) | 587, 1108, 1156, 2306, 2609, 2882, 3688, 4066 |
| FriOI | GRGCYC | 2 cut(s) | 220, 2640 |
| FspAI | RTGCGCAY | 1 cut(s) | 1238 |
| FspBI | CTAG | 7 cut(s) | 1989, 2357, 2411, 2802, 3006, 3167, 3453 |
| FspI | TGCGCA | 2 cut(s) | 1238, 1963 |
| GlaI | GCGC | 2 cut(s) | 1238, 1963 |
| GsuI | CTGGAG | 4 cut(s) | 2325, 2355, 3318, 3999 |
| HaeIII | GGCC | 7 cut(s) | 599, 883, 1182, 1544, 1712, 2431, 3457 |
| HapII | CCGG | 5 cut(s) | 884, 1023, 2186, 2651, 3350 |
| HhaI | GCGC | 2 cut(s) | 1239, 1964 |
| Hin6I | GCGC | 2 cut(s) | 1237, 1962 |
| HinP1I | GCGC | 2 cut(s) | 1237, 1962 |
| HincII | GTYRAC | 1 cut(s) | 2570 |
| HindII | GTYRAC | 1 cut(s) | 2570 |
| HindIII | AAGCTT | 4 cut(s) | 664, 1719, 2111, 2174 |
| HpaII | CCGG | 5 cut(s) | 884, 1023, 2186, 2651, 3350 |
| Hpy166II | GTNNAC | 7 cut(s) | 114, 749, 1845, 2570, 3018, 3133, 3964 |
| Hpy8I | GTNNAC | 7 cut(s) | 114, 749, 1845, 2570, 3018, 3133, 3964 |
| Hpy99I | CGWCG | 2 cut(s) | 2448, 3795 |
| HpyCH4III | ACNGT | 7 cut(s) | 369, 571, 1131, 2158, 2815, 3593, 3971 |
| HpyCH4IV | ACGT | 4 cut(s) | 694, 1703, 2437, 2715 |
| HpySE526I | ACGT | 4 cut(s) | 694, 1703, 2437, 2715 |
| HspAI | GCGC | 2 cut(s) | 1237, 1962 |
| Kpn2I | TCCGGA | 1 cut(s) | 2650 |
| Ksp22I | TGATCA | 2 cut(s) | 126, 306 |
| LmnI | GCTCC | 8 cut(s) | 236, 511, 764, 2635, 2797, 3007, 3508, 4042 |
| LweI | GCATC | 7 cut(s) | 411, 1086, 1248, 1895, 2082, 3203, 3820 |
| MabI | ACCWGGT | 1 cut(s) | 2764 |
| MaeI | CTAG | 7 cut(s) | 1989, 2357, 2411, 2802, 3006, 3167, 3453 |
| MaeII | ACGT | 4 cut(s) | 694, 1703, 2437, 2715 |
| MbiI | CCGCTC | 1 cut(s) | 514 |
| MfeI | CAATTG | 2 cut(s) | 240, 2301 |
| MflI | RGATCY | 5 cut(s) | 142, 553, 1119, 1267, 4069 |
| MhlI | GDGCHC | 3 cut(s) | 220, 2640, 3656 |
| MmeI | TCCRAC | 4 cut(s) | 1503, 2831, 3151, 3457 |
| Mph1103I | ATGCAT | 1 cut(s) | 1910 |
| MroI | TCCGGA | 1 cut(s) | 2650 |
| MroXI | GAANNNNTTC | 3 cut(s) | 189, 492, 3028 |
| MslI | CAYNNNNRTG | 3 cut(s) | 119, 846, 3909 |
| MspA1I | CMGCKG | 1 cut(s) | 3737 |
| MspI | CCGG | 5 cut(s) | 884, 1023, 2186, 2651, 3350 |
| MspR9I | CCNGG | 3 cut(s) | 147, 1024, 2766 |
| MunI | CAATTG | 2 cut(s) | 240, 2301 |
| Mva1269I | GAATGC | 1 cut(s) | 1090 |
| MvaI | CCWGG | 2 cut(s) | 147, 2766 |
| NciI | CCSGG | 1 cut(s) | 1024 |
| NdeI | CATATG | 3 cut(s) | 1392, 1609, 3067 |
| NlaIV | GGNNCC | 2 cut(s) | 1602, 1618 |
| NmeAIII | GCCGAG | 1 cut(s) | 2237 |
| NmuCI | GTSAC | 9 cut(s) | 529, 546, 1630, 2158, 2188, 2218, 3513, 3623, 3845 |
| NsbI | TGCGCA | 2 cut(s) | 1238, 1963 |
| NsiI | ATGCAT | 1 cut(s) | 1910 |
| NspI | RCATGY | 3 cut(s) | 275, 1698, 1912 |
| NspV | TTCGAA | 2 cut(s) | 193, 499 |
| PaeI | GCATGC | 1 cut(s) | 1912 |
| PagI | TCATGA | 1 cut(s) | 3342 |
| PaqCI | CACCTGC | 1 cut(s) | 2372 |
| PceI | AGGCCT | 5 cut(s) | 599, 1544, 1712, 2431, 3457 |
| PciI | ACATGT | 1 cut(s) | 271 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2443 |
| PctI | GAATGC | 1 cut(s) | 1090 |
| PdmI | GAANNNNTTC | 3 cut(s) | 189, 492, 3028 |
| PfeI | GAWTC | 8 cut(s) | 245, 493, 721, 1995, 2297, 3029, 3877, 3919 |
| PfoI | TCCNGGA | 1 cut(s) | 145 |
| PmaCI | CACGTG | 1 cut(s) | 695 |
| PmlI | CACGTG | 1 cut(s) | 695 |
| Ppu21I | YACGTR | 1 cut(s) | 695 |
| PscI | ACATGT | 1 cut(s) | 271 |
| Psp124BI | GAGCTC | 1 cut(s) | 2640 |
| Psp6I | CCWGG | 2 cut(s) | 145, 2764 |
| PspCI | CACGTG | 1 cut(s) | 695 |
| PspGI | CCWGG | 2 cut(s) | 145, 2764 |
| PspN4I | GGNNCC | 2 cut(s) | 1602, 1618 |
| PstI | CTGCAG | 2 cut(s) | 480, 4024 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1952, 2399 |
| PsuI | RGATCY | 5 cut(s) | 142, 553, 1119, 1267, 4069 |
| PvuII | CAGCTG | 1 cut(s) | 3737 |
| RsaI | GTAC | 7 cut(s) | 113, 992, 1148, 2171, 2699, 3017, 3233 |
| RsaNI | GTAC | 7 cut(s) | 112, 991, 1147, 2170, 2698, 3016, 3232 |
| RseI | CAYNNNNRTG | 3 cut(s) | 119, 846, 3909 |
| SacI | GAGCTC | 1 cut(s) | 2640 |
| ScrFI | CCNGG | 3 cut(s) | 147, 1024, 2766 |
| SduI | GDGCHC | 3 cut(s) | 220, 2640, 3656 |
| SexAI | ACCWGGT | 1 cut(s) | 2764 |
| SfaNI | GCATC | 7 cut(s) | 411, 1086, 1248, 1895, 2082, 3203, 3820 |
| SfcI | CTRYAG | 4 cut(s) | 476, 1243, 2149, 4020 |
| SfuI | TTCGAA | 2 cut(s) | 193, 499 |
| SmiI | ATTTAAAT | 1 cut(s) | 1410 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 119, 846, 3909 |
| SmlI | CTYRAG | 6 cut(s) | 874, 1546, 1565, 1804, 2900, 3308 |
| SmoI | CTYRAG | 6 cut(s) | 874, 1546, 1565, 1804, 2900, 3308 |
| SphI | GCATGC | 1 cut(s) | 1912 |
| SseBI | AGGCCT | 5 cut(s) | 599, 1544, 1712, 2431, 3457 |
| SsiI | CCGC | 4 cut(s) | 514, 1868, 2408, 2880 |
| SspI | AATATT | 2 cut(s) | 2859, 3540 |
| SspMI | CTAG | 7 cut(s) | 1989, 2357, 2411, 2802, 3006, 3167, 3453 |
| SstI | GAGCTC | 1 cut(s) | 2640 |
| StuI | AGGCCT | 5 cut(s) | 599, 1544, 1712, 2431, 3457 |
| StyD4I | CCNGG | 3 cut(s) | 145, 1022, 2764 |
| SwaI | ATTTAAAT | 1 cut(s) | 1410 |
| TaaI | ACNGT | 7 cut(s) | 369, 571, 1131, 2158, 2815, 3593, 3971 |
| TaiI | ACGT | 4 cut(s) | 697, 1706, 2440, 2718 |
| TaqI | TCGA | 8 cut(s) | 193, 284, 499, 818, 1641, 1771, 2284, 3931 |
| TatI | WGTACW | 3 cut(s) | 111, 1146, 2697 |
| TfiI | GAWTC | 8 cut(s) | 245, 493, 721, 1995, 2297, 3029, 3877, 3919 |
| TscAI | CASTG | 3 cut(s) | 833, 2005, 3154 |
| TseFI | GTSAC | 9 cut(s) | 529, 546, 1630, 2158, 2188, 2218, 3513, 3623, 3845 |
| Tsp45I | GTSAC | 9 cut(s) | 529, 546, 1630, 2158, 2188, 2218, 3513, 3623, 3845 |
| TspGWI | ACGGA | 4 cut(s) | 524, 1291, 2004, 3227 |
| TspRI | CASTG | 3 cut(s) | 833, 2005, 3154 |
| XapI | RAATTY | 6 cut(s) | 44, 1411, 1426, 1924, 3573, 3795 |
| XbaI | TCTAGA | 1 cut(s) | 2356 |
| XceI | RCATGY | 3 cut(s) | 275, 1698, 1912 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1894 |
| XmiI | GTMKAC | 1 cut(s) | 1844 |
| XmnI | GAANNNNTTC | 3 cut(s) | 189, 492, 3028 |
| XspI | CTAG | 7 cut(s) | 1989, 2357, 2411, 2802, 3006, 3167, 3453 |
| Zsp2I | ATGCAT | 1 cut(s) | 1910 |