MD09G1129500.v1.1

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000154
Physical Location & Seq
Reverse (-)
9986947 .. 9993377
6431 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1129500.v1.1.491

Sequence Viewer

Length: 1686 bp
ATGGCGATACAGAAAGTGGAAGTTGGGGAGAAGGGATTGGTTGCTTTGAAGAATATAAGGAAGGGGGAGAAGCTGCTCTTTGTGCCTCCCTCTCTGTTTATCACCGCAGATTCTACGTCCGTAGAACTACAAGCACAGAGTAAGGACGAAATTTCTGTTTCAAGGACATTGCGGTACGCAAGCCTCGATCTTCAAGTTGTCTGTTTTATAATACGAAGGTTTGGTCAATTTGACTGCAAATCTGCTGCGACTCCTTTTGATGCTGGATGCAAGTTGGAGAAAAATAAAGGCGATGCCAAATCTCAACTTGAATATTCTCAAGTAATTGGAAGTCTAATGTACTTGATGAATTCAACTAGGCCCGACTTAGCTTATGCAGTAAGTAGGCTTAGTAGATATACAAGTAATCCGGCACAAGAGCATTGGGATGCTTTAGTAAGAGTGTTAAGGTATTTGAAAAATACACTTGACTACGGATTACACTACACAAAATATCCACATGTTGTAGAAGGCTTCAGTGATGCCAATTGGATTTCTGACACTACAAAATCCAAGTCCACAAGTGGATATGTTTTTACCTTGGGAGGTGCAGCAATATCTTGGAAATCCTCTAAACAGAAATGTATAGCTCGGTCCACCATGGAGTTCGAGTTTATAGCTTTAGACTTGGCTGGCGAAGAAACCGAGTGGCTCAAACATTTTCTGGAGGATATTCCAATGTGGCCAAAGCCGAACTACAAGCACAGAGTAGGGACGAAATTTCTGTTTCAAGGACATTGCGGTACGCAAGCCTCGATCTTCAAGTTTGAGGTGTCGAAGAAAAACGGTGTACCTGACTGGCCATTTCTGGCGACCTATCTGATTAGTGAAGCAAGTTACCTTCAATCTTCAAGATGGAGCAACTATATTTCTGCCCTACCAAAACAGCCTTATTCCCTTCTGTATTGGACTCAAGAAGAACTTGATCGTTATTTGGAAGCATCAGAAATCAGGCAACGGGCGATTGAAAGAGTTACTAATGTTGTTGGAACGTATGGCCTTGTTCGATTGCCCTTGTTGGGTGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTAAGGTAGACGCATTTTTGGATTATGATAAATCGTCACAGGGAGTTGTCTTTTCAACAGATGAGGCATATGAACCAGGTGAGCAGGTCGTACCCAGTGCACAAAGCTCCCGTTTTACGCAGGGTTTGGGAGAGGTTTTCATTTCTTATGGAAAGAAATCTAACGGAGAGATATTGCTATCCTATGGGTTTGCCCCAAGGGAGGGCACCAACCCTAGAGATTCCGTTGAGGTGCCAGTGTCACTTTCAAAATCGGACAAATGTTATAAGGAGAAGTTGGAAGTTTTGAGAAAGCATGGATCATCAGCTCCTCCAAGTATGAGCGGACAATTTGAAGAGATGGCTGCTGCAGCCTCAAACAAATCTTCCACGAAGAAGGATTTACGATACAGTGAAATAGAGGAAGAAGCTTTACAGTTTATACTGGATACTTGTGAAGCCAGCATATCAAAGTATAACAAATTCTTACAGGCAAGTGGATCCATGGATTTGGATGTGACGTCTCCAAAGCAACTAAACCGAAGGTTGTTTCTGAAGCAGCTAACGGCAGACTTGAGTACTAGAAATCGGAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

562

Amino Acids

63.12

Weight (kDa)

8.62

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 209, 1374
AatII GACGTC 1 cut(s) 1610
Acc36I ACCTGC 1 cut(s) 1183
AccB1I GGYRCC 2 cut(s) 1313, 1339
AccBSI CCGCTC 1 cut(s) 1431
AccI GTMKAC 1 cut(s) 1116
AciI CCGC 4 cut(s) 105, 172, 780, 1431
AclWI GGATC 3 cut(s) 1414, 1581, 1594
AcoI YGGCCR 2 cut(s) 722, 839
AcsI RAATTY 4 cut(s) 150, 349, 758, 1568
AcuI CTGAAG 2 cut(s) 499, 1661
AcyI GRCGYC 1 cut(s) 1607
AfaI GTAC 6 cut(s) 176, 341, 784, 831, 1200, 1666
AfiI CCNNNNNNNGG 3 cut(s) 1058, 1309, 1310
AflIII ACRYGT 1 cut(s) 499
AjnI CCWGG 1 cut(s) 1183
AluBI AGCT 8 cut(s) 73, 371, 629, 659, 1215, 1415, 1517, 1648
AluI AGCT 8 cut(s) 73, 371, 629, 659, 1215, 1415, 1517, 1648
Alw21I GWGCWC 1 cut(s) 1210
Alw26I GTCTC 1 cut(s) 1614
Alw44I GTGCAC 1 cut(s) 1206
AlwI GGATC 3 cut(s) 1414, 1581, 1594
AoxI GGCC 4 cut(s) 359, 722, 839, 1036
ApaLI GTGCAC 1 cut(s) 1206
ApeKI GCWGC 7 cut(s) 73, 245, 590, 1451, 1454, 1457, 1645
ApoI RAATTY 4 cut(s) 150, 349, 758, 1568
ArsI GACNNNNNNTTYG 4 cut(s) 208, 240, 539, 571
AspS9I GGNCC 2 cut(s) 360, 633
AsuHPI GGTGA 2 cut(s) 94, 1199
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 2 cut(s) 1210, 1316
BalI TGGCCA 2 cut(s) 724, 841
BamHI GGATCC 1 cut(s) 1586
BanI GGYRCC 2 cut(s) 1313, 1339
BarI GAAGNNNNNNTAC 2 cut(s) 1503, 1535
Bbv12I GWGCWC 1 cut(s) 1210
BbvI GCAGC 7 cut(s) 60, 232, 602, 1438, 1441, 1469, 1657
BccI CCATC 2 cut(s) 888, 1441
BceAI ACGGC 1 cut(s) 1668
BciT130I CCWGG 1 cut(s) 1185
BciVI GTATCC 1 cut(s) 1528
BcoDI GTCTC 1 cut(s) 1614
BfaI CTAG 3 cut(s) 357, 1323, 1668
BfmI CTRYAG 1 cut(s) 1455
BfuAI ACCTGC 1 cut(s) 1183
BfuI GTATCC 1 cut(s) 1528
BisI GCNGC 7 cut(s) 74, 246, 591, 1452, 1455, 1458, 1646
BlsI GCNGC 7 cut(s) 75, 247, 592, 1453, 1456, 1459, 1647
BmcAI AGTACT 1 cut(s) 1666
Bme1390I CCNGG 1 cut(s) 1185
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 360, 633
BmiI GGNNCC 4 cut(s) 1080, 1315, 1341, 1588
BmrFI CCNGG 1 cut(s) 1185
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 6 cut(s) 250, 257, 283, 418, 511, 989
BmuI ACTGGG 1 cut(s) 1197
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 3 cut(s) 303, 936, 1681
BsaHI GRCGYC 1 cut(s) 1607
BsaJI CCNNGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 1058, 1309, 1310
Bse1I ACTGG 4 cut(s) 842, 1203, 1343, 1536
Bse3DI GCAATG 2 cut(s) 167, 775
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
BseGI GGATG 3 cut(s) 272, 433, 1606
BseLI CCNNNNNNNGG 3 cut(s) 1058, 1309, 1310
BseMI GCAATG 2 cut(s) 167, 775
BseNI ACTGG 4 cut(s) 842, 1203, 1343, 1536
BseRI GAGGAG 1 cut(s) 1407
BseSI GKGCMC 2 cut(s) 1210, 1316
BseXI GCAGC 7 cut(s) 60, 232, 602, 1438, 1441, 1469, 1657
BsgI GTGCAG 1 cut(s) 609
BshFI GGCC 4 cut(s) 361, 724, 841, 1038
BshNI GGYRCC 2 cut(s) 1313, 1339
BsiHKAI GWGCWC 1 cut(s) 1210
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 3 cut(s) 1058, 1309, 1310
BsmAI GTCTC 1 cut(s) 1614
BsmBI CGTCTC 1 cut(s) 1614
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 4 cut(s) 361, 724, 841, 1038
Bsp1286I GDGCHC 2 cut(s) 1210, 1316
Bsp143I GATC 5 cut(s) 187, 795, 964, 1406, 1586
Bsp19I CCATGG 2 cut(s) 639, 1590
BspACI CCGC 4 cut(s) 105, 172, 780, 1431
BspANI GGCC 4 cut(s) 361, 724, 841, 1038
BspLI GGNNCC 4 cut(s) 1080, 1315, 1341, 1588
BspMAI CTGCAG 1 cut(s) 1459
BspMI ACCTGC 1 cut(s) 1183
BspPI GGATC 3 cut(s) 1414, 1581, 1594
BspT107I GGYRCC 2 cut(s) 1313, 1339
BsrBI CCGCTC 1 cut(s) 1431
BsrDI GCAATG 2 cut(s) 167, 775
BsrI ACTGG 4 cut(s) 842, 1203, 1343, 1536
BssECI CCNNGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
BssMI GATC 5 cut(s) 187, 795, 964, 1406, 1586
BssNI GRCGYC 1 cut(s) 1607
BssT1I CCWWGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 3 cut(s) 827, 1499, 1524
Bst6I CTCTTC 1 cut(s) 1437
BstACI GRCGYC 1 cut(s) 1607
BstC8I GCNNGC 4 cut(s) 181, 673, 789, 1549
BstDEI CTNAG 2 cut(s) 367, 389
BstDSI CCRYGG 2 cut(s) 639, 1590
BstF5I GGATG 3 cut(s) 272, 433, 1606
BstKTI GATC 5 cut(s) 190, 798, 967, 1409, 1589
BstMAI GTCTC 1 cut(s) 1614
BstMBI GATC 5 cut(s) 187, 795, 964, 1406, 1586
BstMWI GCNNNNNNNGC 2 cut(s) 82, 1457
BstNI CCWGG 1 cut(s) 1185
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 1183
BstSFI CTRYAG 1 cut(s) 1455
BstSLI GKGCMC 2 cut(s) 1210, 1316
BstV1I GCAGC 7 cut(s) 60, 232, 602, 1438, 1441, 1469, 1657
BstX2I RGATCY 1 cut(s) 1586
BstXI CCANNNNNNTGG 1 cut(s) 1597
BstYI RGATCY 1 cut(s) 1586
BsuI GTATCC 1 cut(s) 1528
BsuRI GGCC 4 cut(s) 361, 724, 841, 1038
BtgI CCRYGG 2 cut(s) 639, 1590
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 272, 433, 1606
BtsIMutI CAGTG 4 cut(s) 523, 1210, 1350, 1504
BveI ACCTGC 1 cut(s) 1183
Cac8I GCNNGC 4 cut(s) 181, 673, 789, 1549
Cfr13I GGNCC 2 cut(s) 360, 633
CseI GACGC 1 cut(s) 1127
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 6 cut(s) 175, 340, 783, 830, 1199, 1665
CviAII CATG 4 cut(s) 500, 640, 1403, 1591
CviQI GTAC 6 cut(s) 175, 340, 783, 830, 1199, 1665
DdeI CTNAG 2 cut(s) 367, 389
DpnI GATC 5 cut(s) 189, 797, 966, 1408, 1588
DpnII GATC 5 cut(s) 187, 795, 964, 1406, 1586
EaeI YGGCCR 2 cut(s) 722, 839
Eam1104I CTCTTC 1 cut(s) 1437
EarI CTCTTC 1 cut(s) 1437
Eco130I CCWWGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
Eco47I GGWCC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 499, 1661
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 1183
EcoT14I CCWWGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
ErhI CCWWGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
Esp3I CGTCTC 1 cut(s) 1614
FaeI CATG 4 cut(s) 503, 643, 1406, 1594
FalI AAGNNNNNCTT 6 cut(s) 62, 94, 945, 977, 1058, 1090
FaqI GGGAC 1 cut(s) 766
FatI CATG 4 cut(s) 499, 639, 1402, 1590
FauNDI CATATG 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 1116
Fnu4HI GCNGC 7 cut(s) 74, 246, 591, 1452, 1455, 1458, 1646
FokI GGATG 3 cut(s) 279, 440, 1613
Fsp4HI GCNGC 7 cut(s) 74, 246, 591, 1452, 1455, 1458, 1646
FspBI CTAG 3 cut(s) 357, 1323, 1668
GluI GCNGC 7 cut(s) 74, 246, 591, 1452, 1455, 1458, 1646
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 4 cut(s) 361, 724, 841, 1038
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 1127
Hin1I GRCGYC 1 cut(s) 1607
Hin1II CATG 4 cut(s) 503, 643, 1406, 1594
HindIII AAGCTT 1 cut(s) 1515
HinfI GANTC 6 cut(s) 110, 250, 949, 1099, 1328, 1680
HpaII CCGG 1 cut(s) 410
HphI GGTGA 2 cut(s) 94, 1199
Hpy166II GTNNAC 5 cut(s) 558, 636, 830, 1117, 1208
Hpy188I TCNGA 6 cut(s) 538, 861, 985, 1363, 1641, 1677
Hpy188III TCNNGA 3 cut(s) 704, 891, 953
Hpy8I GTNNAC 5 cut(s) 558, 636, 830, 1117, 1208
HpyAV CCTTC 8 cut(s) 25, 55, 210, 503, 890, 947, 1477, 1623
HpyCH4III ACNGT 3 cut(s) 827, 1499, 1524
HpyCH4IV ACGT 3 cut(s) 116, 1031, 1607
HpyCH4V TGCA 6 cut(s) 237, 270, 377, 590, 1208, 1457
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 1457
HpyF3I CTNAG 2 cut(s) 367, 389
HpySE526I ACGT 3 cut(s) 116, 1031, 1607
Hsp92I GRCGYC 1 cut(s) 1607
Hsp92II CATG 4 cut(s) 503, 643, 1406, 1594
Kzo9I GATC 5 cut(s) 187, 795, 964, 1406, 1586
LmnI GCTCC 3 cut(s) 897, 1220, 1420
Lsp1109I GCAGC 7 cut(s) 60, 232, 602, 1438, 1441, 1469, 1657
LweI GCATC 6 cut(s) 250, 257, 283, 418, 511, 989
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 3 cut(s) 357, 1323, 1668
MaeII ACGT 3 cut(s) 116, 1031, 1607
MaeIII GTNAC 5 cut(s) 875, 1012, 1143, 1347, 1603
MalI GATC 5 cut(s) 189, 797, 966, 1408, 1588
MbiI CCGCTC 1 cut(s) 1431
MboI GATC 5 cut(s) 187, 795, 964, 1406, 1586
MfeI CAATTG 1 cut(s) 526
MflI RGATCY 1 cut(s) 1586
MhlI GDGCHC 2 cut(s) 1210, 1316
MlsI TGGCCA 2 cut(s) 724, 841
MluCI AATT 8 cut(s) 150, 227, 324, 349, 526, 758, 1436, 1568
MluNI TGGCCA 2 cut(s) 724, 841
MlyI GAGTC 2 cut(s) 244, 943
MmeI TCCRAC 3 cut(s) 255, 1006, 1365
Mox20I TGGCCA 2 cut(s) 724, 841
MscI TGGCCA 2 cut(s) 724, 841
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 426
Msp20I TGGCCA 2 cut(s) 724, 841
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 1185
MunI CAATTG 1 cut(s) 526
MvaI CCWGG 1 cut(s) 1185
MwoI GCNNNNNNNGC 2 cut(s) 82, 1457
NcoI CCATGG 2 cut(s) 639, 1590
NdeI CATATG 1 cut(s) 1177
NdeII GATC 5 cut(s) 187, 795, 964, 1406, 1586
NlaIII CATG 4 cut(s) 503, 643, 1406, 1594
NlaIV GGNNCC 4 cut(s) 1080, 1315, 1341, 1588
NmuCI GTSAC 3 cut(s) 1143, 1347, 1603
NspI RCATGY 1 cut(s) 503
PciI ACATGT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 791
PfeI GAWTC 4 cut(s) 110, 1099, 1328, 1680
PkrI GCNGC 7 cut(s) 75, 247, 592, 1453, 1456, 1459, 1647
PleI GAGTC 2 cut(s) 244, 943
PpsI GAGTC 2 cut(s) 244, 943
PscI ACATGT 1 cut(s) 499
PsiI TTATAA 2 cut(s) 209, 1374
Psp6I CCWGG 1 cut(s) 1183
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 4 cut(s) 1080, 1315, 1341, 1588
PspPI GGNCC 2 cut(s) 360, 633
PstI CTGCAG 1 cut(s) 1459
PsuI RGATCY 1 cut(s) 1586
RsaI GTAC 6 cut(s) 176, 341, 784, 831, 1200, 1666
RsaNI GTAC 6 cut(s) 175, 340, 783, 830, 1199, 1665
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 7 cut(s) 74, 246, 591, 1452, 1455, 1458, 1646
Sau3AI GATC 5 cut(s) 187, 795, 964, 1406, 1586
Sau96I GGNCC 2 cut(s) 360, 633
ScaI AGTACT 1 cut(s) 1666
SchI GAGTC 2 cut(s) 244, 943
ScrFI CCNGG 1 cut(s) 1185
SduI GDGCHC 2 cut(s) 1210, 1316
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 6 cut(s) 250, 257, 283, 418, 511, 989
SfcI CTRYAG 1 cut(s) 1455
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 3 cut(s) 318, 951, 1660
SmoI CTYRAG 3 cut(s) 318, 951, 1660
Sse9I AATT 8 cut(s) 150, 227, 324, 349, 526, 758, 1436, 1568
SsiI CCGC 4 cut(s) 105, 172, 780, 1431
SspI AATATT 1 cut(s) 314
SspMI CTAG 3 cut(s) 357, 1323, 1668
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 6 cut(s) 579, 639, 1074, 1082, 1304, 1590
TaaI ACNGT 3 cut(s) 827, 1499, 1524
TaiI ACGT 3 cut(s) 119, 1034, 1610
TaqI TCGA 5 cut(s) 186, 648, 794, 815, 1045
TaqII GACCGA 1 cut(s) 621
TasI AATT 8 cut(s) 150, 227, 324, 349, 526, 758, 1436, 1568
TatI WGTACW 2 cut(s) 339, 1664
TfiI GAWTC 4 cut(s) 110, 1099, 1328, 1680
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 4 cut(s) 523, 1210, 1350, 1504
TseFI GTSAC 3 cut(s) 1143, 1347, 1603
TseI GCWGC 7 cut(s) 73, 245, 590, 1451, 1454, 1457, 1645
Tsp45I GTSAC 3 cut(s) 1143, 1347, 1603
TspDTI ATGAA 3 cut(s) 362, 1194, 1237
TspGWI ACGGA 4 cut(s) 109, 489, 1287, 1321
TspRI CASTG 4 cut(s) 523, 1210, 1350, 1504
VneI GTGCAC 1 cut(s) 1206
VpaK11BI GGWCC 1 cut(s) 633
XapI RAATTY 4 cut(s) 150, 349, 758, 1568
XceI RCATGY 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 3 cut(s) 357, 1323, 1668
ZraI GACGTC 1 cut(s) 1608
ZrmI AGTACT 1 cut(s) 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.