Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 108 - 267 | 1.4e-27 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 336 - 416 | 2.4e-27 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 443 - 509 | 1.5e-15 | GAG-pre-integrase domain |
| SH3_retrovirus | PF25597 | 523 - 584 | 1.1e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 678 - 739 | 3.3e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 735 - 879 | 9.2e-41 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 957, 1887, 2163, 3187 |
| Acc36I | ACCTGC | 1 cut(s) | 2760 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1496 |
| AccI | GTMKAC | 2 cut(s) | 1873, 2950 |
| AciI | CCGC | 4 cut(s) | 92, 95, 197, 2967 |
| AclWI | GGATC | 4 cut(s) | 83, 1481, 1946, 1959 |
| AcoI | YGGCCR | 2 cut(s) | 1417, 2727 |
| AcuI | CTGAAG | 3 cut(s) | 1200, 1331, 2925 |
| AfaI | GTAC | 5 cut(s) | 50, 1467, 1676, 2297, 2720 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 439, 1496, 2973 |
| AflIII | ACRYGT | 1 cut(s) | 2953 |
| AjiI | CACGTC | 2 cut(s) | 823, 2954 |
| AjnI | CCWGG | 3 cut(s) | 80, 855, 1195 |
| Alw21I | GWGCWC | 1 cut(s) | 2049 |
| Alw26I | GTCTC | 6 cut(s) | 371, 626, 1396, 2030, 2137, 2665 |
| AlwI | GGATC | 4 cut(s) | 83, 1481, 1946, 1959 |
| AoxI | GGCC | 5 cut(s) | 1225, 1417, 1662, 2641, 2727 |
| ApeKI | GCWGC | 6 cut(s) | 20, 97, 392, 767, 1319, 2807 |
| AseI | ATTAAT | 1 cut(s) | 2307 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1559 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AspS9I | GGNCC | 5 cut(s) | 58, 1225, 1528, 1754, 2121 |
| AsuC2I | CCSGG | 1 cut(s) | 194 |
| AsuHPI | GGTGA | 8 cut(s) | 962, 1112, 1145, 1277, 2189, 2274, 2675, 2776 |
| AsuNHI | GCTAGC | 1 cut(s) | 1025 |
| AvaII | GGWCC | 4 cut(s) | 58, 1528, 1754, 2121 |
| BaeGI | GKGCMC | 1 cut(s) | 863 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 229, 262, 1457, 1490, 2287, 2320 |
| BalI | TGGCCA | 1 cut(s) | 1419 |
| BamHI | GGATCC | 1 cut(s) | 1951 |
| BanII | GRGCYC | 2 cut(s) | 2049, 2274 |
| BbsI | GAAGAC | 1 cut(s) | 1691 |
| Bbv12I | GWGCWC | 1 cut(s) | 2049 |
| BbvI | GCAGC | 6 cut(s) | 7, 84, 379, 754, 1306, 2794 |
| BceAI | ACGGC | 2 cut(s) | 1692, 2742 |
| BciT130I | CCWGG | 3 cut(s) | 82, 857, 1197 |
| BclI | TGATCA | 2 cut(s) | 1078, 1701 |
| BcnI | CCSGG | 1 cut(s) | 194 |
| BcoDI | GTCTC | 6 cut(s) | 371, 626, 1396, 2030, 2137, 2665 |
| BfaI | CTAG | 6 cut(s) | 869, 1026, 2211, 3114, 3138, 3159 |
| BfmI | CTRYAG | 1 cut(s) | 550 |
| BfuAI | ACCTGC | 1 cut(s) | 2760 |
| BglII | AGATCT | 1 cut(s) | 1879 |
| BisI | GCNGC | 7 cut(s) | 21, 95, 98, 393, 768, 1320, 2808 |
| BlpI | GCTNAGC | 1 cut(s) | 2651 |
| BlsI | GCNGC | 7 cut(s) | 22, 96, 99, 394, 769, 1321, 2809 |
| Bme1390I | CCNGG | 4 cut(s) | 82, 194, 857, 1197 |
| Bme18I | GGWCC | 4 cut(s) | 58, 1528, 1754, 2121 |
| BmgBI | CACGTC | 2 cut(s) | 823, 2954 |
| BmgT120I | GGNCC | 5 cut(s) | 58, 1225, 1528, 1754, 2121 |
| BmiI | GGNNCC | 3 cut(s) | 1953, 2122, 2839 |
| BmrFI | CCNGG | 4 cut(s) | 82, 194, 857, 1197 |
| BmrI | ACTGGG | 1 cut(s) | 2612 |
| BmsI | GCATC | 4 cut(s) | 471, 697, 937, 991 |
| BmtI | GCTAGC | 1 cut(s) | 1029 |
| BmuI | ACTGGG | 1 cut(s) | 2612 |
| BpiI | GAAGAC | 1 cut(s) | 1691 |
| BpmI | CTGGAG | 3 cut(s) | 815, 963, 1965 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2651 |
| BpuEI | CTTGAG | 3 cut(s) | 387, 2258, 2547 |
| BpuMI | CCSGG | 1 cut(s) | 194 |
| Bsa29I | ATCGAT | 1 cut(s) | 8 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1794 |
| BsaI | GGTCTC | 1 cut(s) | 2665 |
| BsaJI | CCNNGG | 5 cut(s) | 80, 856, 1261, 1305, 2001 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3027, 3057 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 439, 1496, 2973 |
| Bse1I | ACTGG | 4 cut(s) | 747, 1490, 2618, 2876 |
| Bse3DI | GCAATG | 2 cut(s) | 129, 3046 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1794 |
| BseBI | CCWGG | 3 cut(s) | 82, 857, 1197 |
| BseCI | ATCGAT | 1 cut(s) | 8 |
| BseDI | CCNNGG | 5 cut(s) | 80, 856, 1261, 1305, 2001 |
| BseGI | GGATG | 5 cut(s) | 1501, 2011, 2419, 2607, 3109 |
| BseJI | GATNNNNATC | 1 cut(s) | 1794 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 439, 1496, 2973 |
| BseMI | GCAATG | 2 cut(s) | 129, 3046 |
| BseMII | CTCAG | 1 cut(s) | 1908 |
| BseNI | ACTGG | 4 cut(s) | 747, 1490, 2618, 2876 |
| BseRI | GAGGAG | 3 cut(s) | 1803, 1882, 2193 |
| BseSI | GKGCMC | 1 cut(s) | 863 |
| BseXI | GCAGC | 6 cut(s) | 7, 84, 379, 754, 1306, 2794 |
| BshFI | GGCC | 5 cut(s) | 1227, 1419, 1664, 2643, 2729 |
| BshVI | ATCGAT | 1 cut(s) | 8 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2049 |
| BsiSI | CCGG | 1 cut(s) | 193 |
| BslFI | GGGAC | 2 cut(s) | 63, 290 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 439, 1496, 2973 |
| BsmAI | GTCTC | 6 cut(s) | 371, 626, 1396, 2030, 2137, 2665 |
| BsmBI | CGTCTC | 1 cut(s) | 371 |
| BsmFI | GGGAC | 2 cut(s) | 63, 290 |
| BsmI | GAATGC | 4 cut(s) | 520, 550, 841, 2614 |
| BsnI | GGCC | 5 cut(s) | 1227, 1419, 1664, 2643, 2729 |
| Bso31I | GGTCTC | 1 cut(s) | 2665 |
| Bsp1286I | GDGCHC | 3 cut(s) | 863, 2049, 2274 |
| Bsp1407I | TGTACA | 1 cut(s) | 1674 |
| Bsp143I | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2651 |
| Bsp19I | CCATGG | 1 cut(s) | 2001 |
| BspACI | CCGC | 4 cut(s) | 92, 95, 197, 2967 |
| BspANI | GGCC | 5 cut(s) | 1227, 1419, 1664, 2643, 2729 |
| BspCNI | CTCAG | 1 cut(s) | 1907 |
| BspDI | ATCGAT | 1 cut(s) | 8 |
| BspHI | TCATGA | 1 cut(s) | 3148 |
| BspLI | GGNNCC | 3 cut(s) | 1953, 2122, 2839 |
| BspMI | ACCTGC | 1 cut(s) | 2760 |
| BspOI | GCTAGC | 1 cut(s) | 1029 |
| BspPI | GGATC | 4 cut(s) | 83, 1481, 1946, 1959 |
| BspTNI | GGTCTC | 1 cut(s) | 2665 |
| BsrDI | GCAATG | 2 cut(s) | 129, 3046 |
| BsrGI | TGTACA | 1 cut(s) | 1674 |
| BsrI | ACTGG | 4 cut(s) | 747, 1490, 2618, 2876 |
| BssECI | CCNNGG | 5 cut(s) | 80, 856, 1261, 1305, 2001 |
| BssMI | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| BssNAI | GTATAC | 1 cut(s) | 1874 |
| BssT1I | CCWWGG | 2 cut(s) | 1305, 2001 |
| Bst1107I | GTATAC | 1 cut(s) | 1874 |
| Bst2UI | CCWGG | 3 cut(s) | 82, 857, 1197 |
| Bst4CI | ACNGT | 5 cut(s) | 53, 67, 167, 2303, 2903 |
| Bst6I | CTCTTC | 5 cut(s) | 369, 461, 771, 810, 2223 |
| BstAUI | TGTACA | 1 cut(s) | 1674 |
| BstC8I | GCNNGC | 7 cut(s) | 525, 919, 975, 1027, 1031, 1998, 2504 |
| BstDEI | CTNAG | 6 cut(s) | 158, 1395, 1823, 1894, 2541, 2651 |
| BstDSI | CCRYGG | 2 cut(s) | 1261, 2001 |
| BstF5I | GGATG | 5 cut(s) | 1501, 2011, 2419, 2607, 3109 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 9 cut(s) | 91, 540, 991, 1081, 1489, 1704, 1882, 1954, 2419 |
| BstMAI | GTCTC | 6 cut(s) | 371, 626, 1396, 2030, 2137, 2665 |
| BstMBI | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 208, 515, 524, 845, 1543, 1774, 2640 |
| BstNI | CCWGG | 3 cut(s) | 82, 857, 1197 |
| BstNSI | RCATGY | 2 cut(s) | 981, 1977 |
| BstSCI | CCNGG | 4 cut(s) | 80, 192, 855, 1195 |
| BstSFI | CTRYAG | 1 cut(s) | 550 |
| BstSLI | GKGCMC | 1 cut(s) | 863 |
| BstV1I | GCAGC | 6 cut(s) | 7, 84, 379, 754, 1306, 2794 |
| BstV2I | GAAGAC | 1 cut(s) | 1691 |
| BstX2I | RGATCY | 2 cut(s) | 1879, 1951 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2292 |
| BstYI | RGATCY | 2 cut(s) | 1879, 1951 |
| BstZ17I | GTATAC | 1 cut(s) | 1874 |
| Bsu15I | ATCGAT | 1 cut(s) | 8 |
| BsuRI | GGCC | 5 cut(s) | 1227, 1419, 1664, 2643, 2729 |
| BsuTUI | ATCGAT | 1 cut(s) | 8 |
| BtgI | CCRYGG | 2 cut(s) | 1261, 2001 |
| BtrI | CACGTC | 2 cut(s) | 823, 2954 |
| BtsCI | GGATG | 5 cut(s) | 1501, 2011, 2419, 2607, 3109 |
| BtsIMutI | CAGTG | 3 cut(s) | 1497, 2883, 2908 |
| BveI | ACCTGC | 1 cut(s) | 2760 |
| Cac8I | GCNNGC | 7 cut(s) | 525, 919, 975, 1027, 1031, 1998, 2504 |
| CciI | TCATGA | 1 cut(s) | 3148 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr13I | GGNCC | 5 cut(s) | 58, 1225, 1528, 1754, 2121 |
| ClaI | ATCGAT | 1 cut(s) | 8 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 5 cut(s) | 49, 1466, 1675, 2296, 2719 |
| CviQI | GTAC | 5 cut(s) | 49, 1466, 1675, 2296, 2719 |
| DdeI | CTNAG | 6 cut(s) | 158, 1395, 1823, 1894, 2541, 2651 |
| DpnI | GATC | 9 cut(s) | 90, 539, 990, 1080, 1488, 1703, 1881, 1953, 2418 |
| DpnII | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| DraI | TTTAAA | 1 cut(s) | 1425 |
| EaeI | YGGCCR | 2 cut(s) | 1417, 2727 |
| Eam1104I | CTCTTC | 5 cut(s) | 369, 461, 771, 810, 2223 |
| EarI | CTCTTC | 5 cut(s) | 369, 461, 771, 810, 2223 |
| EciI | GGCGGA | 1 cut(s) | 81 |
| Ecl136II | GAGCTC | 1 cut(s) | 2047 |
| Eco130I | CCWWGG | 2 cut(s) | 1305, 2001 |
| Eco147I | AGGCCT | 2 cut(s) | 1664, 2643 |
| Eco24I | GRGCYC | 2 cut(s) | 2049, 2274 |
| Eco31I | GGTCTC | 1 cut(s) | 2665 |
| Eco47I | GGWCC | 4 cut(s) | 58, 1528, 1754, 2121 |
| Eco53kI | GAGCTC | 1 cut(s) | 2047 |
| Eco57I | CTGAAG | 3 cut(s) | 1200, 1331, 2925 |
| EcoICRI | GAGCTC | 1 cut(s) | 2047 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1528 |
| EcoRII | CCWGG | 3 cut(s) | 80, 855, 1195 |
| EcoT14I | CCWWGG | 2 cut(s) | 1305, 2001 |
| EcoT22I | ATGCAT | 3 cut(s) | 930, 2293, 2636 |
| EcoT38I | GRGCYC | 2 cut(s) | 2049, 2274 |
| ErhI | CCWWGG | 2 cut(s) | 1305, 2001 |
| Esp3I | CGTCTC | 1 cut(s) | 371 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 440, 472 |
| FaqI | GGGAC | 2 cut(s) | 63, 290 |
| FauNDI | CATATG | 2 cut(s) | 307, 1035 |
| FbaI | TGATCA | 2 cut(s) | 1078, 1701 |
| FblI | GTMKAC | 2 cut(s) | 1873, 2950 |
| Fnu4HI | GCNGC | 7 cut(s) | 21, 95, 98, 393, 768, 1320, 2808 |
| FokI | GGATG | 5 cut(s) | 1508, 2018, 2426, 2614, 3116 |
| FriOI | GRGCYC | 2 cut(s) | 2049, 2274 |
| Fsp4HI | GCNGC | 7 cut(s) | 21, 95, 98, 393, 768, 1320, 2808 |
| FspBI | CTAG | 6 cut(s) | 869, 1026, 2211, 3114, 3138, 3159 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 7 cut(s) | 21, 95, 98, 393, 768, 1320, 2808 |
| GsuI | CTGGAG | 3 cut(s) | 815, 963, 1965 |
| HaeIII | GGCC | 5 cut(s) | 1227, 1419, 1664, 2643, 2729 |
| HapII | CCGG | 1 cut(s) | 193 |
| HgaI | GACGC | 1 cut(s) | 65 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HincII | GTYRAC | 2 cut(s) | 399, 3054 |
| HindII | GTYRAC | 2 cut(s) | 399, 3054 |
| HindIII | AAGCTT | 2 cut(s) | 1343, 2249 |
| HinfI | GANTC | 9 cut(s) | 5, 697, 779, 1847, 2071, 2145, 2681, 3010, 3079 |
| HpaI | GTTAAC | 2 cut(s) | 399, 3054 |
| HpaII | CCGG | 1 cut(s) | 193 |
| HphI | GGTGA | 8 cut(s) | 962, 1112, 1145, 1277, 2189, 2274, 2675, 2776 |
| Hpy166II | GTNNAC | 9 cut(s) | 70, 399, 1717, 1874, 2245, 2951, 2959, 2976, 3054 |
| Hpy188I | TCNGA | 9 cut(s) | 172, 1180, 1350, 1683, 1804, 1897, 2337, 2432, 2944 |
| Hpy8I | GTNNAC | 9 cut(s) | 70, 399, 1717, 1874, 2245, 2951, 2959, 2976, 3054 |
| HpyCH4III | ACNGT | 5 cut(s) | 53, 67, 167, 2303, 2903 |
| HpyCH4IV | ACGT | 2 cut(s) | 822, 2953 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 208, 515, 524, 845, 1543, 1774, 2640 |
| HpyF3I | CTNAG | 6 cut(s) | 158, 1395, 1823, 1894, 2541, 2651 |
| HpySE526I | ACGT | 2 cut(s) | 822, 2953 |
| HspAI | GCGC | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 2 cut(s) | 1078, 1701 |
| KspAI | GTTAAC | 2 cut(s) | 399, 3054 |
| Kzo9I | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| LmnI | GCTCC | 8 cut(s) | 208, 343, 914, 1022, 1656, 1816, 2044, 2206 |
| Lsp1109I | GCAGC | 6 cut(s) | 7, 84, 379, 754, 1306, 2794 |
| LweI | GCATC | 4 cut(s) | 471, 697, 937, 991 |
| MaeI | CTAG | 6 cut(s) | 869, 1026, 2211, 3114, 3138, 3159 |
| MaeII | ACGT | 2 cut(s) | 822, 2953 |
| MaeIII | GTNAC | 4 cut(s) | 658, 1043, 2623, 3067 |
| MalI | GATC | 9 cut(s) | 90, 539, 990, 1080, 1488, 1703, 1881, 1953, 2418 |
| MboI | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| MfeI | CAATTG | 1 cut(s) | 1164 |
| MflI | RGATCY | 2 cut(s) | 1879, 1951 |
| MhlI | GDGCHC | 3 cut(s) | 863, 2049, 2274 |
| MlsI | TGGCCA | 1 cut(s) | 1419 |
| MluNI | TGGCCA | 1 cut(s) | 1419 |
| MlyI | GAGTC | 4 cut(s) | 788, 1841, 2139, 3088 |
| MmeI | TCCRAC | 4 cut(s) | 299, 594, 1291, 3025 |
| Mox20I | TGGCCA | 1 cut(s) | 1419 |
| Mph1103I | ATGCAT | 3 cut(s) | 930, 2293, 2636 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1559 |
| MscI | TGGCCA | 1 cut(s) | 1419 |
| MslI | CAYNNNNRTG | 2 cut(s) | 479, 1722 |
| Msp20I | TGGCCA | 1 cut(s) | 1419 |
| MspA1I | CMGCKG | 1 cut(s) | 97 |
| MspI | CCGG | 1 cut(s) | 193 |
| MspR9I | CCNGG | 4 cut(s) | 82, 194, 857, 1197 |
| MunI | CAATTG | 1 cut(s) | 1164 |
| Mva1269I | GAATGC | 4 cut(s) | 520, 550, 841, 2614 |
| MvaI | CCWGG | 3 cut(s) | 82, 857, 1197 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 208, 515, 524, 845, 1543, 1774, 2640 |
| NciI | CCSGG | 1 cut(s) | 194 |
| NcoI | CCATGG | 1 cut(s) | 2001 |
| NdeI | CATATG | 2 cut(s) | 307, 1035 |
| NdeII | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| NheI | GCTAGC | 1 cut(s) | 1025 |
| NlaIV | GGNNCC | 3 cut(s) | 1953, 2122, 2839 |
| NmeAIII | GCCGAG | 2 cut(s) | 535, 1563 |
| NmuCI | GTSAC | 1 cut(s) | 2623 |
| NsiI | ATGCAT | 3 cut(s) | 930, 2293, 2636 |
| NspI | RCATGY | 2 cut(s) | 981, 1977 |
| PagI | TCATGA | 1 cut(s) | 3148 |
| PceI | AGGCCT | 2 cut(s) | 1664, 2643 |
| PctI | GAATGC | 4 cut(s) | 520, 550, 841, 2614 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1559 |
| PfeI | GAWTC | 5 cut(s) | 5, 697, 2071, 2681, 3010 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1496 |
| PkrI | GCNGC | 7 cut(s) | 22, 96, 99, 394, 769, 1321, 2809 |
| PleI | GAGTC | 4 cut(s) | 787, 1841, 2139, 3087 |
| PpsI | GAGTC | 4 cut(s) | 787, 1841, 2139, 3087 |
| PpuMI | RGGWCCY | 1 cut(s) | 1528 |
| PshBI | ATTAAT | 1 cut(s) | 2307 |
| PsiI | TTATAA | 4 cut(s) | 957, 1887, 2163, 3187 |
| Psp124BI | GAGCTC | 1 cut(s) | 2049 |
| Psp5II | RGGWCCY | 1 cut(s) | 1528 |
| Psp6I | CCWGG | 3 cut(s) | 80, 855, 1195 |
| PspGI | CCWGG | 3 cut(s) | 80, 855, 1195 |
| PspN4I | GGNNCC | 3 cut(s) | 1953, 2122, 2839 |
| PspPI | GGNCC | 5 cut(s) | 58, 1225, 1528, 1754, 2121 |
| PspPPI | RGGWCCY | 1 cut(s) | 1528 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 561, 593, 1176, 1208 |
| PsuI | RGATCY | 2 cut(s) | 1879, 1951 |
| RsaI | GTAC | 5 cut(s) | 50, 1467, 1676, 2297, 2720 |
| RsaNI | GTAC | 5 cut(s) | 49, 1466, 1675, 2296, 2719 |
| RseI | CAYNNNNRTG | 2 cut(s) | 479, 1722 |
| SacI | GAGCTC | 1 cut(s) | 2049 |
| SatI | GCNGC | 7 cut(s) | 21, 95, 98, 393, 768, 1320, 2808 |
| Sau3AI | GATC | 9 cut(s) | 88, 537, 988, 1078, 1486, 1701, 1879, 1951, 2416 |
| Sau96I | GGNCC | 5 cut(s) | 58, 1225, 1528, 1754, 2121 |
| SchI | GAGTC | 4 cut(s) | 788, 1841, 2139, 3088 |
| ScrFI | CCNGG | 4 cut(s) | 82, 194, 857, 1197 |
| SduI | GDGCHC | 3 cut(s) | 863, 2049, 2274 |
| SfaNI | GCATC | 4 cut(s) | 471, 697, 937, 991 |
| SfcI | CTRYAG | 1 cut(s) | 550 |
| SinI | GGWCC | 4 cut(s) | 58, 1528, 1754, 2121 |
| SmiI | ATTTAAAT | 1 cut(s) | 1425 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 479, 1722 |
| SmlI | CTYRAG | 3 cut(s) | 402, 2273, 2562 |
| SmoI | CTYRAG | 3 cut(s) | 402, 2273, 2562 |
| SseBI | AGGCCT | 2 cut(s) | 1664, 2643 |
| SsiI | CCGC | 4 cut(s) | 92, 95, 197, 2967 |
| SspI | AATATT | 1 cut(s) | 355 |
| SspMI | CTAG | 6 cut(s) | 869, 1026, 2211, 3114, 3138, 3159 |
| SstI | GAGCTC | 1 cut(s) | 2049 |
| StuI | AGGCCT | 2 cut(s) | 1664, 2643 |
| StyD4I | CCNGG | 4 cut(s) | 80, 192, 855, 1195 |
| StyI | CCWWGG | 2 cut(s) | 1305, 2001 |
| SwaI | ATTTAAAT | 1 cut(s) | 1425 |
| TaaI | ACNGT | 5 cut(s) | 53, 67, 167, 2303, 2903 |
| TaiI | ACGT | 2 cut(s) | 825, 2956 |
| TaqI | TCGA | 7 cut(s) | 8, 540, 702, 753, 774, 1611, 2319 |
| TatI | WGTACW | 2 cut(s) | 1674, 2718 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 5 cut(s) | 5, 697, 2071, 2681, 3010 |
| TscAI | CASTG | 3 cut(s) | 1497, 2883, 2908 |
| TseFI | GTSAC | 1 cut(s) | 2623 |
| TseI | GCWGC | 6 cut(s) | 20, 97, 392, 767, 1319, 2807 |
| Tsp45I | GTSAC | 1 cut(s) | 2623 |
| TspGWI | ACGGA | 4 cut(s) | 135, 395, 722, 1250 |
| TspRI | CASTG | 3 cut(s) | 1497, 2883, 2908 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1496 |
| VpaK11BI | GGWCC | 4 cut(s) | 58, 1528, 1754, 2121 |
| VspI | ATTAAT | 1 cut(s) | 2307 |
| XbaI | TCTAGA | 3 cut(s) | 3113, 3137, 3158 |
| XceI | RCATGY | 2 cut(s) | 981, 1977 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1427 |
| XmiI | GTMKAC | 2 cut(s) | 1873, 2950 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1559 |
| XspI | CTAG | 6 cut(s) | 869, 1026, 2211, 3114, 3138, 3159 |
| Zsp2I | ATGCAT | 3 cut(s) | 930, 2293, 2636 |