Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 28 - 207 | 1.5e-30 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 355 - 434 | 5.4e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 465 - 516 | 2.9e-10 | GAG-pre-integrase domain |
| SH3_retrovirus | PF25597 | 623 - 687 | 3.7e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 786 - 1030 | 1.3e-85 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2734 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1844, 2971 |
| AccI | GTMKAC | 3 cut(s) | 2119, 2376, 2879 |
| AciI | CCGC | 1 cut(s) | 248 |
| AclWI | GGATC | 6 cut(s) | 16, 264, 315, 1873, 1973, 3376 |
| AcsI | RAATTY | 9 cut(s) | 377, 722, 739, 808, 1210, 1571, 1586, 2053, 2434 |
| AcuI | CTGAAG | 7 cut(s) | 344, 804, 1062, 1629, 2682, 3495, 3519 |
| AcyI | GRCGYC | 1 cut(s) | 2735 |
| AdeI | CACNNNGTG | 1 cut(s) | 561 |
| AfaI | GTAC | 8 cut(s) | 1149, 1456, 1752, 1967, 2451, 3173, 3634, 3872 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 247, 1464, 1827, 1844, 2008, 2971 |
| AflII | CTTAAG | 1 cut(s) | 2797 |
| AhlI | ACTAGT | 2 cut(s) | 2198, 2470 |
| AjnI | CCWGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| AleI | CACNNNNGTG | 1 cut(s) | 921 |
| Alw21I | GWGCWC | 1 cut(s) | 869 |
| Alw26I | GTCTC | 9 cut(s) | 256, 563, 1468, 2182, 2354, 2510, 2857, 3079, 3771 |
| AlwI | GGATC | 6 cut(s) | 16, 264, 315, 1873, 1973, 3376 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1748, 2583 |
| ApeKI | GCWGC | 7 cut(s) | 203, 1507, 2297, 2570, 3128, 3206, 3679 |
| ApoI | RAATTY | 9 cut(s) | 377, 722, 739, 808, 1210, 1571, 1586, 2053, 2434 |
| AseI | ATTAAT | 2 cut(s) | 447, 2676 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1189 |
| AspA2I | CCTAGG | 1 cut(s) | 2738 |
| AspLEI | GCGC | 1 cut(s) | 2737 |
| AspS9I | GGNCC | 2 cut(s) | 1343, 2742 |
| AsuHPI | GGTGA | 8 cut(s) | 37, 59, 91, 347, 479, 1063, 1773, 2954 |
| AvaII | GGWCC | 2 cut(s) | 1343, 2742 |
| AvrII | CCTAGG | 1 cut(s) | 2738 |
| AxyI | CCTNAGG | 1 cut(s) | 3394 |
| BanI | GGYRCC | 1 cut(s) | 2734 |
| BbsI | GAAGAC | 6 cut(s) | 189, 1529, 1906, 2694, 2948, 3384 |
| Bbv12I | GWGCWC | 1 cut(s) | 869 |
| BbvI | GCAGC | 7 cut(s) | 215, 1519, 2284, 2557, 3140, 3218, 3691 |
| BciT130I | CCWGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| BclI | TGATCA | 4 cut(s) | 337, 1420, 2209, 2653 |
| BcoDI | GTCTC | 9 cut(s) | 256, 563, 1468, 2182, 2354, 2510, 2857, 3079, 3771 |
| BcuI | ACTAGT | 2 cut(s) | 2198, 2470 |
| BfmI | CTRYAG | 3 cut(s) | 573, 1822, 3677 |
| BfoI | RGCGCY | 1 cut(s) | 2738 |
| BfrI | CTTAAG | 1 cut(s) | 2797 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| BglII | AGATCT | 1 cut(s) | 347 |
| BisI | GCNGC | 7 cut(s) | 204, 1508, 2298, 2571, 3129, 3207, 3680 |
| BlnI | CCTAGG | 1 cut(s) | 2738 |
| BlsI | GCNGC | 7 cut(s) | 205, 1509, 2299, 2572, 3130, 3208, 3681 |
| Bme1390I | CCNGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| Bme18I | GGWCC | 2 cut(s) | 1343, 2742 |
| BmgT120I | GGNCC | 2 cut(s) | 1343, 2742 |
| BmiI | GGNNCC | 2 cut(s) | 2277, 2736 |
| BmrFI | CCNGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| BmsI | GCATC | 5 cut(s) | 208, 671, 1236, 3012, 3661 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2952 |
| BpiI | GAAGAC | 6 cut(s) | 189, 1529, 1906, 2694, 2948, 3384 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1560, 1592 |
| BpmI | CTGGAG | 2 cut(s) | 85, 2511 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1698, 3854 |
| BpuEI | CTTGAG | 2 cut(s) | 587, 1487 |
| Bsa29I | ATCGAT | 2 cut(s) | 3645, 3693 |
| BsaBI | GATNNNNATC | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 2735 |
| BsaI | GGTCTC | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 2 cut(s) | 269, 2738 |
| BsaWI | WCCGGW | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2509, 2539, 3808, 3838 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 247, 1464, 1827, 1844, 2008, 2971 |
| Bse1I | ACTGG | 8 cut(s) | 1067, 1102, 1144, 1165, 2219, 2528, 2887, 3617 |
| Bse21I | CCTNAGG | 1 cut(s) | 3394 |
| Bse3DI | GCAATG | 4 cut(s) | 757, 1632, 1710, 3232 |
| Bse8I | GATNNNNATC | 1 cut(s) | 131 |
| BseBI | CCWGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| BseCI | ATCGAT | 2 cut(s) | 3645, 3693 |
| BseDI | CCNNGG | 2 cut(s) | 269, 2738 |
| BseGI | GGATG | 5 cut(s) | 1126, 2017, 2446, 2872, 2911 |
| BseJI | GATNNNNATC | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 247, 1464, 1827, 1844, 2008, 2971 |
| BseMI | GCAATG | 4 cut(s) | 757, 1632, 1710, 3232 |
| BseMII | CTCAG | 7 cut(s) | 12, 150, 183, 639, 684, 3289, 3408 |
| BseNI | ACTGG | 8 cut(s) | 1067, 1102, 1144, 1165, 2219, 2528, 2887, 3617 |
| BseXI | GCAGC | 7 cut(s) | 215, 1519, 2284, 2557, 3140, 3218, 3691 |
| BsgI | GTGCAG | 6 cut(s) | 515, 786, 2283, 2510, 2556, 3147 |
| BshNI | GGYRCC | 1 cut(s) | 2734 |
| BshVI | ATCGAT | 2 cut(s) | 3645, 3693 |
| BsiHKAI | GWGCWC | 1 cut(s) | 869 |
| BsiSI | CCGG | 1 cut(s) | 45 |
| BslFI | GGGAC | 3 cut(s) | 1293, 3271, 3304 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 247, 1464, 1827, 1844, 2008, 2971 |
| BsmAI | GTCTC | 9 cut(s) | 256, 563, 1468, 2182, 2354, 2510, 2857, 3079, 3771 |
| BsmFI | GGGAC | 3 cut(s) | 1293, 3271, 3304 |
| BsmI | GAATGC | 3 cut(s) | 250, 399, 956 |
| Bso31I | GGTCTC | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 1 cut(s) | 869 |
| Bsp1407I | TGTACA | 2 cut(s) | 1750, 3870 |
| BspACI | CCGC | 1 cut(s) | 248 |
| BspCNI | CTCAG | 7 cut(s) | 13, 149, 182, 640, 683, 3288, 3407 |
| BspDI | ATCGAT | 2 cut(s) | 3645, 3693 |
| BspHI | TCATGA | 2 cut(s) | 828, 1711 |
| BspLI | GGNNCC | 2 cut(s) | 2277, 2736 |
| BspMAI | CTGCAG | 1 cut(s) | 3681 |
| BspPI | GGATC | 6 cut(s) | 16, 264, 315, 1873, 1973, 3376 |
| BspT107I | GGYRCC | 1 cut(s) | 2734 |
| BspTI | CTTAAG | 1 cut(s) | 2797 |
| BspTNI | GGTCTC | 1 cut(s) | 256 |
| BsrDI | GCAATG | 4 cut(s) | 757, 1632, 1710, 3232 |
| BsrGI | TGTACA | 2 cut(s) | 1750, 3870 |
| BsrI | ACTGG | 8 cut(s) | 1067, 1102, 1144, 1165, 2219, 2528, 2887, 3617 |
| BssECI | CCNNGG | 2 cut(s) | 269, 2738 |
| BssNAI | GTATAC | 2 cut(s) | 2120, 2880 |
| BssNI | GRCGYC | 1 cut(s) | 2735 |
| BssT1I | CCWWGG | 1 cut(s) | 2738 |
| Bst1107I | GTATAC | 2 cut(s) | 2120, 2880 |
| Bst2UI | CCWGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| Bst6I | CTCTTC | 5 cut(s) | 367, 599, 1315, 3037, 3132 |
| BstACI | GRCGYC | 1 cut(s) | 2735 |
| BstAFI | CTTAAG | 1 cut(s) | 2797 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 986, 2570 |
| BstAUI | TGTACA | 2 cut(s) | 1750, 3870 |
| BstC8I | GCNNGC | 2 cut(s) | 961, 1724 |
| BstF5I | GGATG | 5 cut(s) | 1126, 2017, 2446, 2872, 2911 |
| BstH2I | RGCGCY | 1 cut(s) | 2738 |
| BstHHI | GCGC | 1 cut(s) | 2737 |
| BstMAI | GTCTC | 9 cut(s) | 256, 563, 1468, 2182, 2354, 2510, 2857, 3079, 3771 |
| BstNI | CCWGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| BstNSI | RCATGY | 3 cut(s) | 1726, 2902, 3879 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2952 |
| BstSCI | CCNGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| BstSFI | CTRYAG | 3 cut(s) | 573, 1822, 3677 |
| BstV1I | GCAGC | 7 cut(s) | 215, 1519, 2284, 2557, 3140, 3218, 3691 |
| BstV2I | GAAGAC | 6 cut(s) | 189, 1529, 1906, 2694, 2948, 3384 |
| BstX2I | RGATCY | 3 cut(s) | 8, 307, 347 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1097, 2226, 2863 |
| BstYI | RGATCY | 3 cut(s) | 8, 307, 347 |
| BstZ17I | GTATAC | 2 cut(s) | 2120, 2880 |
| Bsu15I | ATCGAT | 2 cut(s) | 3645, 3693 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3394 |
| BsuTUI | ATCGAT | 2 cut(s) | 3645, 3693 |
| BtsCI | GGATG | 5 cut(s) | 1126, 2017, 2446, 2872, 2911 |
| BtsI | GCAGTG | 3 cut(s) | 3127, 3468, 3584 |
| Cac8I | GCNNGC | 2 cut(s) | 961, 1724 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1748, 2583 |
| CciI | TCATGA | 2 cut(s) | 828, 1711 |
| CfoI | GCGC | 1 cut(s) | 2737 |
| Cfr13I | GGNCC | 2 cut(s) | 1343, 2742 |
| ClaI | ATCGAT | 2 cut(s) | 3645, 3693 |
| CsiI | ACCWGGT | 2 cut(s) | 1249, 2744 |
| Csp6I | GTAC | 8 cut(s) | 1148, 1455, 1751, 1966, 2450, 3172, 3633, 3871 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1995, 2030, 3500, 3535 |
| CviQI | GTAC | 8 cut(s) | 1148, 1455, 1751, 1966, 2450, 3172, 3633, 3871 |
| DinI | GGCGCC | 1 cut(s) | 2736 |
| DraIII | CACNNNGTG | 1 cut(s) | 561 |
| Eam1104I | CTCTTC | 5 cut(s) | 367, 599, 1315, 3037, 3132 |
| EarI | CTCTTC | 5 cut(s) | 367, 599, 1315, 3037, 3132 |
| Eco130I | CCWWGG | 1 cut(s) | 2738 |
| Eco31I | GGTCTC | 1 cut(s) | 256 |
| Eco32I | GATATC | 3 cut(s) | 2245, 3656, 3847 |
| Eco47I | GGWCC | 2 cut(s) | 1343, 2742 |
| Eco57I | CTGAAG | 7 cut(s) | 344, 804, 1062, 1629, 2682, 3495, 3519 |
| Eco81I | CCTNAGG | 1 cut(s) | 3394 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2742 |
| EcoRI | GAATTC | 3 cut(s) | 739, 1586, 2053 |
| EcoRII | CCWGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| EcoRV | GATATC | 3 cut(s) | 2245, 3656, 3847 |
| EcoT14I | CCWWGG | 1 cut(s) | 2738 |
| EcoT22I | ATGCAT | 2 cut(s) | 1229, 3234 |
| EgeI | GGCGCC | 1 cut(s) | 2736 |
| EheI | GGCGCC | 1 cut(s) | 2736 |
| ErhI | CCWWGG | 1 cut(s) | 2738 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 508, 540, 863, 895 |
| FaqI | GGGAC | 3 cut(s) | 1293, 3271, 3304 |
| FauNDI | CATATG | 1 cut(s) | 1284 |
| FbaI | TGATCA | 4 cut(s) | 337, 1420, 2209, 2653 |
| FblI | GTMKAC | 3 cut(s) | 2119, 2376, 2879 |
| Fnu4HI | GCNGC | 7 cut(s) | 204, 1508, 2298, 2571, 3129, 3207, 3680 |
| FokI | GGATG | 5 cut(s) | 1133, 2024, 2453, 2879, 2918 |
| Fsp4HI | GCNGC | 7 cut(s) | 204, 1508, 2298, 2571, 3129, 3207, 3680 |
| GlaI | GCGC | 1 cut(s) | 2736 |
| GluI | GCNGC | 7 cut(s) | 204, 1508, 2298, 2571, 3129, 3207, 3680 |
| GsuI | CTGGAG | 2 cut(s) | 85, 2511 |
| HaeII | RGCGCY | 1 cut(s) | 2738 |
| HapII | CCGG | 1 cut(s) | 45 |
| HhaI | GCGC | 1 cut(s) | 2737 |
| Hin1I | GRCGYC | 1 cut(s) | 2735 |
| Hin6I | GCGC | 1 cut(s) | 2735 |
| HinP1I | GCGC | 1 cut(s) | 2735 |
| HindIII | AAGCTT | 7 cut(s) | 1907, 2310, 2794, 3152, 3744, 3782, 3805 |
| HpaII | CCGG | 1 cut(s) | 45 |
| HphI | GGTGA | 8 cut(s) | 37, 59, 91, 347, 479, 1063, 1773, 2954 |
| Hpy166II | GTNNAC | 7 cut(s) | 521, 1193, 2120, 2377, 2698, 2880, 3873 |
| Hpy8I | GTNNAC | 7 cut(s) | 521, 1193, 2120, 2377, 2698, 2880, 3873 |
| Hsp92I | GRCGYC | 1 cut(s) | 2735 |
| HspAI | GCGC | 1 cut(s) | 2735 |
| KasI | GGCGCC | 1 cut(s) | 2734 |
| Ksp22I | TGATCA | 4 cut(s) | 337, 1420, 2209, 2653 |
| LmnI | GCTCC | 2 cut(s) | 2275, 2530 |
| Lsp1109I | GCAGC | 7 cut(s) | 215, 1519, 2284, 2557, 3140, 3218, 3691 |
| LweI | GCATC | 5 cut(s) | 208, 671, 1236, 3012, 3661 |
| MabI | ACCWGGT | 2 cut(s) | 1249, 2744 |
| MaeIII | GTNAC | 9 cut(s) | 79, 914, 1003, 1135, 1444, 1847, 2128, 3350, 3581 |
| MfeI | CAATTG | 1 cut(s) | 3372 |
| MflI | RGATCY | 3 cut(s) | 8, 307, 347 |
| MhlI | GDGCHC | 1 cut(s) | 869 |
| Mly113I | GGCGCC | 1 cut(s) | 2735 |
| MlyI | GAGTC | 4 cut(s) | 616, 770, 1801, 2496 |
| MmeI | TCCRAC | 3 cut(s) | 802, 1581, 3021 |
| MnlI | CCTC | 9 cut(s) | 16, 166, 279, 1511, 2284, 3040, 3093, 3359, 3403 |
| Mph1103I | ATGCAT | 2 cut(s) | 1229, 3234 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1189 |
| MslI | CAYNNNNRTG | 3 cut(s) | 333, 921, 2861 |
| MspA1I | CMGCKG | 1 cut(s) | 1760 |
| MspCI | CTTAAG | 1 cut(s) | 2797 |
| MspI | CCGG | 1 cut(s) | 45 |
| MspR9I | CCNGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| MunI | CAATTG | 1 cut(s) | 3372 |
| Mva1269I | GAATGC | 3 cut(s) | 250, 399, 956 |
| MvaI | CCWGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| NarI | GGCGCC | 1 cut(s) | 2735 |
| NdeI | CATATG | 1 cut(s) | 1284 |
| NlaIV | GGNNCC | 2 cut(s) | 2277, 2736 |
| NmuCI | GTSAC | 8 cut(s) | 79, 914, 1003, 1135, 1847, 2128, 3350, 3581 |
| NsiI | ATGCAT | 2 cut(s) | 1229, 3234 |
| NspI | RCATGY | 3 cut(s) | 1726, 2902, 3879 |
| OliI | CACNNNNGTG | 1 cut(s) | 921 |
| PacI | TTAATTAA | 1 cut(s) | 447 |
| PaeI | GCATGC | 1 cut(s) | 1726 |
| PagI | TCATGA | 2 cut(s) | 828, 1711 |
| PctI | GAATGC | 3 cut(s) | 250, 399, 956 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1189 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1844, 2971 |
| PkrI | GCNGC | 7 cut(s) | 205, 1509, 2299, 2572, 3130, 3208, 3681 |
| PleI | GAGTC | 4 cut(s) | 615, 769, 1801, 2496 |
| PluTI | GGCGCC | 1 cut(s) | 2738 |
| PpsI | GAGTC | 4 cut(s) | 615, 769, 1801, 2496 |
| PpuMI | RGGWCCY | 1 cut(s) | 2742 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2952 |
| PshBI | ATTAAT | 2 cut(s) | 447, 2676 |
| Psp5II | RGGWCCY | 1 cut(s) | 2742 |
| Psp6I | CCWGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| PspGI | CCWGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| PspN4I | GGNNCC | 2 cut(s) | 2277, 2736 |
| PspPI | GGNCC | 2 cut(s) | 1343, 2742 |
| PspPPI | RGGWCCY | 1 cut(s) | 2742 |
| PstI | CTGCAG | 1 cut(s) | 3681 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1748, 2583 |
| PsuI | RGATCY | 3 cut(s) | 8, 307, 347 |
| PvuII | CAGCTG | 1 cut(s) | 1760 |
| RsaI | GTAC | 8 cut(s) | 1149, 1456, 1752, 1967, 2451, 3173, 3634, 3872 |
| RsaNI | GTAC | 8 cut(s) | 1148, 1455, 1751, 1966, 2450, 3172, 3633, 3871 |
| RseI | CAYNNNNRTG | 3 cut(s) | 333, 921, 2861 |
| SatI | GCNGC | 7 cut(s) | 204, 1508, 2298, 2571, 3129, 3207, 3680 |
| Sau96I | GGNCC | 2 cut(s) | 1343, 2742 |
| SchI | GAGTC | 4 cut(s) | 616, 770, 1801, 2496 |
| ScrFI | CCNGG | 5 cut(s) | 1251, 1459, 1839, 2499, 2746 |
| SduI | GDGCHC | 1 cut(s) | 869 |
| SexAI | ACCWGGT | 2 cut(s) | 1249, 2744 |
| SfaNI | GCATC | 5 cut(s) | 208, 671, 1236, 3012, 3661 |
| SfcI | CTRYAG | 3 cut(s) | 573, 1822, 3677 |
| SfoI | GGCGCC | 1 cut(s) | 2736 |
| SinI | GGWCC | 2 cut(s) | 1343, 2742 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 333, 921, 2861 |
| SmlI | CTYRAG | 3 cut(s) | 566, 1502, 2797 |
| SmoI | CTYRAG | 3 cut(s) | 566, 1502, 2797 |
| SpeI | ACTAGT | 2 cut(s) | 2198, 2470 |
| SphI | GCATGC | 1 cut(s) | 1726 |
| SsiI | CCGC | 1 cut(s) | 248 |
| SspDI | GGCGCC | 1 cut(s) | 2734 |
| SspI | AATATT | 2 cut(s) | 264, 2631 |
| StyD4I | CCNGG | 5 cut(s) | 1249, 1457, 1837, 2497, 2744 |
| StyI | CCWWGG | 1 cut(s) | 2738 |
| TaqI | TCGA | 4 cut(s) | 892, 2505, 3645, 3693 |
| TatI | WGTACW | 3 cut(s) | 1147, 1750, 3870 |
| TseFI | GTSAC | 8 cut(s) | 79, 914, 1003, 1135, 1847, 2128, 3350, 3581 |
| TseI | GCWGC | 7 cut(s) | 203, 1507, 2297, 2570, 3128, 3206, 3679 |
| Tsp45I | GTSAC | 8 cut(s) | 79, 914, 1003, 1135, 1847, 2128, 3350, 3581 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1844, 2971 |
| Vha464I | CTTAAG | 1 cut(s) | 2797 |
| VpaK11BI | GGWCC | 2 cut(s) | 1343, 2742 |
| VspI | ATTAAT | 2 cut(s) | 447, 2676 |
| XapI | RAATTY | 9 cut(s) | 377, 722, 739, 808, 1210, 1571, 1586, 2053, 2434 |
| XceI | RCATGY | 3 cut(s) | 1726, 2902, 3879 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1165, 1734, 2434 |
| XmaJI | CCTAGG | 1 cut(s) | 2738 |
| XmiI | GTMKAC | 3 cut(s) | 2119, 2376, 2879 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1189 |
| Zsp2I | ATGCAT | 2 cut(s) | 1229, 3234 |