Rw1G031080

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
59162878 .. 59163399
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031080.1

Sequence Viewer

Length: 522 bp
ATGAGGTACTTCCTCGAAGTTGACGTGATACAGAGTGAAAATGGGATTTTTATGTGTCAAAGAAGATATGCTCGTGAAGTTTTAACGAGGTTTGGAATGGATAAAAGCAATTCAGTGAGGAATCCCATGGTTCTAGGCACGAAGTTGTCAAAAGATCAAGCTAGTACCAAAGTTGATGCAACCCTATTCAAGCAAGTGGTCGGCAGCCTTATGTACCTAACTGCAACTCGACCAAACCTAATGTATGGAGTAAGTCTCATTAGTAGATATATGTCTTGTCCAACTGAATCTCATTTGTCTGCAGCAAAAAGGATACTAAGGTATTTGAGAGGTACAACCGAGCTGGGAATTCTTTACAAAAATGGAGGTAGCACAGATCTTGTGGCTTACACCGACAGTGACTTTGCCGGTGATTTGGATGATCGGAGGAGTACTTTTGGCTTTGTTTTCATGCTTGGTTCTGGAACTGTATCGTGGTCCTCTAAGAAACAGCATGTGGCCGGTAACATTGTCTACCACTGA

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

9.51

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 5 cut(s) 8, 166, 215, 334, 433
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 25
AluBI AGCT 2 cut(s) 161, 343
AluI AGCT 2 cut(s) 161, 343
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 2 cut(s) 204, 302
ApoI RAATTY 1 cut(s) 348
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 305, 338
BauI CACGAG 1 cut(s) 72
BbvI GCAGC 2 cut(s) 216, 314
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 134, 162
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 306
BglII AGATCT 1 cut(s) 376
BisI GCNGC 2 cut(s) 205, 303
BlsI GCNGC 2 cut(s) 206, 304
BmcAI AGTACT 1 cut(s) 433
Bme18I GGWCC 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 477
BmsI GCATC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BsaJI CCNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 407, 500
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 2 cut(s) 216, 314
BseYI CCCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 500
BsiSI CCGG 2 cut(s) 408, 501
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 500
Bsp143I GATC 3 cut(s) 154, 376, 421
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 1 cut(s) 500
BspMAI CTGCAG 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 407, 500
BssAI RCCGGY 2 cut(s) 407, 500
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 154, 376, 421
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 398, 469
BstDEI CTNAG 2 cut(s) 317, 483
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 3 cut(s) 157, 379, 424
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 154, 376, 421
BstNSI RCATGY 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 216, 314
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 3 cut(s) 120, 403, 517
Cfr10I RCCGGY 2 cut(s) 407, 500
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 5 cut(s) 7, 165, 214, 333, 432
CviAII CATG 3 cut(s) 127, 451, 494
CviJI RGCY 6 cut(s) 161, 207, 343, 386, 441, 500
CviKI_1 RGCY 6 cut(s) 161, 207, 343, 386, 441, 500
CviQI GTAC 5 cut(s) 7, 165, 214, 333, 432
DdeI CTNAG 2 cut(s) 317, 483
DpnI GATC 3 cut(s) 156, 378, 423
DpnII GATC 3 cut(s) 154, 376, 421
EaeI YGGCCR 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 130, 454, 497
FaiI YATR 9 cut(s) 53, 69, 128, 212, 246, 270, 272, 452, 495
FatI CATG 3 cut(s) 126, 450, 493
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 205, 303
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 205, 303
FspBI CTAG 2 cut(s) 134, 162
GluI GCNGC 2 cut(s) 205, 303
GsaI CCCAGC 1 cut(s) 347
HaeIII GGCC 1 cut(s) 500
HapII CCGG 2 cut(s) 408, 501
Hin1II CATG 3 cut(s) 130, 454, 497
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 121, 287
HpaII CCGG 2 cut(s) 408, 501
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 22, 514
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 2 cut(s) 74, 462
Hpy8I GTNNAC 2 cut(s) 22, 514
HpyCH4III ACNGT 2 cut(s) 398, 469
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 179, 224, 302
HpyF3I CTNAG 2 cut(s) 317, 483
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 130, 454, 497
Kzo9I GATC 3 cut(s) 154, 376, 421
LpnPI CCDG 4 cut(s) 329, 421, 447, 514
Lsp1109I GCAGC 2 cut(s) 216, 314
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 134, 162
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 398, 503
MalI GATC 3 cut(s) 156, 378, 423
MboI GATC 3 cut(s) 154, 376, 421
MboII GAAGA 1 cut(s) 75
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 109, 348
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 7 cut(s) 23, 81, 111, 323, 359, 420, 490
MseI TTAA 1 cut(s) 83
MspI CCGG 2 cut(s) 408, 501
NcoI CCATGG 1 cut(s) 126
NdeII GATC 3 cut(s) 154, 376, 421
NlaIII CATG 3 cut(s) 130, 454, 497
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 2 cut(s) 121, 287
PkrI GCNGC 2 cut(s) 206, 304
PspFI CCCAGC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 477
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 5 cut(s) 8, 166, 215, 334, 433
RsaNI GTAC 5 cut(s) 7, 165, 214, 333, 432
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 205, 303
Sau3AI GATC 3 cut(s) 154, 376, 421
Sau96I GGNCC 1 cut(s) 477
ScaI AGTACT 1 cut(s) 433
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 477
Sse9I AATT 2 cut(s) 109, 348
SspMI CTAG 2 cut(s) 134, 162
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 398, 469
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 15, 229
TasI AATT 2 cut(s) 109, 348
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 2 cut(s) 121, 287
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 2 cut(s) 120, 403
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 204, 302
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 439
TspRI CASTG 2 cut(s) 120, 403
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 2 cut(s) 134, 162
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.