pycom06g03750

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000154
Physical Location & Seq
Reverse (-)
4695575 .. 4696042
468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03750.1

Sequence Viewer

Length: 468 bp
ATGTTGACTAATTATGGAGAACCCGAAACTTATAAGGATGCTAGAACTCATAACGATAATGAAAGATGGATGAAGGCAATGGAGTCAGAGATAGATTCCTTATTAAAAAATGATACGTATGAACTGGTGGAGCTTCCAACATTGAAAAACAAGTGGGTGTTCAAATTGAAAAGAGACAATAATATGACAAGGGACAAGGCTCATTTGGTTGTCAAAGGTTCTAGTAAAAAGAAAGGAGTTGACTTTGATGAGATTTTCTCACCGGTGGTGAAGGTGACTTTTATTCGAGTTATCCTTGGTATGGAAGCAAGCATGGATCTTGAGCTTGAGCAGTTAGACGTTAAAACTGCATTTCTCCACGGCAATTTAGAAGAAGAGATATACATGGAGCAACCCAAAGGCTTTGAAGTCAAAGGTAAAGAAAATTTGGTGTGCAAGCTGAAGAAAAGCTTATATGGTCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

156

Amino Acids

18.03

Weight (kDa)

6.34

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 37 - 155 1.8e-34 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 145, 163, 169, 407
AluBI AGCT 4 cut(s) 133, 325, 439, 450
AluI AGCT 4 cut(s) 133, 325, 439, 450
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 424
AsiGI ACCGGT 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 252, 280, 286
BccI CCATC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 2 cut(s) 42, 222
BfrI CTTAAG 1 cut(s) 461
BmsI GCATC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 2 cut(s) 341, 347
BsaAI YACGTR 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 295, 358
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 295, 358
BseGI GGATG 2 cut(s) 43, 75
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 262
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 316
BspPI GGATC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 295, 358
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 369
BstAFI CTTAAG 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 310, 437
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 43, 75
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 316
BstSNI TACGTA 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 2 cut(s) 43, 75
Cac8I GCNNGC 2 cut(s) 310, 437
Cfr10I RCCGGY 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 2 cut(s) 313, 385
CviJI RGCY 6 cut(s) 133, 200, 325, 402, 439, 450
CviKI_1 RGCY 6 cut(s) 133, 200, 325, 402, 439, 450
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco105I TACGTA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 316, 388
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 312, 384
FokI GGATG 2 cut(s) 50, 82
FspBI CTAG 2 cut(s) 42, 222
HapII CCGG 1 cut(s) 263
Hin1II CATG 2 cut(s) 316, 388
HincII GTYRAC 2 cut(s) 6, 241
HindII GTYRAC 2 cut(s) 6, 241
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 2 cut(s) 83, 95
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 252, 280, 286
Hpy166II GTNNAC 2 cut(s) 6, 241
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 2 cut(s) 6, 241
HpyAV CCTTC 2 cut(s) 67, 265
HpyCH4IV ACGT 2 cut(s) 116, 339
HpyCH4V TGCA 2 cut(s) 350, 435
HpySE526I ACGT 2 cut(s) 116, 339
Hsp92II CATG 2 cut(s) 316, 388
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 130, 388
LpnPI CCDG 2 cut(s) 110, 276
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 42, 222
MaeII ACGT 2 cut(s) 116, 339
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 3 cut(s) 383, 386, 454
MflI RGATCY 1 cut(s) 316
MluCI AATT 4 cut(s) 10, 164, 364, 424
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 161
MseI TTAA 3 cut(s) 104, 342, 462
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 1 cut(s) 263
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 316, 388
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 262
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 117
PsiI TTATAA 1 cut(s) 33
PsuI RGATCY 1 cut(s) 316
SaqAI TTAA 3 cut(s) 104, 342, 462
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 92
SetI ASST 9 cut(s) 119, 135, 220, 276, 327, 342, 418, 441, 452
SfaNI GCATC 1 cut(s) 28
SgrAI CRCCGGYG 1 cut(s) 262
SmlI CTYRAG 3 cut(s) 320, 326, 461
SmoI CTYRAG 3 cut(s) 320, 326, 461
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 4 cut(s) 10, 164, 364, 424
SspMI CTAG 2 cut(s) 42, 222
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 2 cut(s) 119, 342
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 10, 164, 364, 424
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 104, 342, 462
Tru9I TTAA 3 cut(s) 104, 342, 462
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 75, 86, 135
Vha464I CTTAAG 1 cut(s) 461
XapI RAATTY 1 cut(s) 424
XspI CTAG 2 cut(s) 42, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.