RchiOBHm_Chr1g0329831

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000154
Physical Location & Seq
Forward (+)
19581575 .. 19585718
4144 bp
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UTR
Exon/CDS
Intron
PRQ55909

Sequence Viewer

Length: 2142 bp
ATGCATACAAAATTTGACTATGTTGTATGTTCGACTGAGGAATCACATGACATTGATGAAGTTTCGATTGATGAGTTGCAAAGTTCGTTGTTGGTTCATGAGCAGAGAATTAATCAAGGGGCTACAACAGAGGAGCAAGCTTTGAAGGTCTCTTCCAACACTCCAGTTGCTTTTGAGGGTGTAGGACGTGGTCAAGGAAGAGGCAGAGGTAGATTCAATTCCTATTCCAGAGGCAGAGGACGTGGTCAAGGATCAAGGTTTGACAAATCCAATATTGAATGCTTCAATTGCCACAGGTATGGCCATTATAGGTCAGAATGTCCTACTTTCTTTAGAGGTCAGGGAGAAAGATCAAATTATGCTGAGATAGAAGAAGAAGAAACAACCTTATTGAGGGCATGTCATAACAAGGAAGAAAAGTCTAATAATCTGTGGTATTTAGATTCAGGATGCAGTAATCATATGTGTGGCAATAAGTTGTTATTTTCTGACTTGGATGAATCCTTTAGAGATATTGTGAAGTTCGGAGACAATTCTACTGTCTCTGTTATGGGGAAAGGAAGTATCAATGTTCGTATGAAAAATGATGTTGTTGAAAGAGTTCCCAGTGTGTTCTATGTTCCAGATTTGAAAAGCAACTTGCTTAGCTTGGGTCAACTACAAGAGAAAGTCTATCATATCAGCATTAAAAATGGAGTTTGCCTCATTGAAGATTCAACAAGAGGTGTAATTGCTCGGGTTAAAATGACATCAAACCGATTGTTTCCCATAATTATTCAAGATGATGGTCCAAGTCTCCAAACTTGTTTCTCTGCAAAAGTAAAAGACTTGGCATGGCTGTGGCATTTTCGGTATGGGCATCTCAATTTCAATGGGCTACAGACTCTAAGACAGAAAAGCATGGTGACAGGTCTTCCACATATTGTCTCTCCATCACAAGTGTGTGAAGATTGTATTGTTGGCAAACAACATCGTGATCACTTCCCCAGAGGAAATGCATGGAGAGCTCTAAACCCTTTAGAGCTGGTTCATTCGGACATTTGCGAACCAATAAATCCAACCTCTAATGGTGGTAAGAGGTATTTTATAACGTTCATTGATGATTATAGCAGGAAGACATGGGTATATTTTTTGCAAAAAAAGTCTGAAGCTTTTGTGGCTTTTAAGAGTTTCAAAGCTCTTGTGGAGAATGAAGTTGGAAGAACAATTAAGGTCTTGCAAACAGATCGTGGTGGAGAGTTCAACTCTAAAGAGTTTGCAAGTTTCTGTGAGATGAATGGCATTAGAAGGCAACTCACCGCAGCTTACACACCACAACAGAATGGCGTTAGTGAGAGGAAGAACCATACAATCTTGAATATGCCTTTGGGATATGTGCAGCAAGGGAATGAAGAGAAGGTGTACAAGTTGAAGAAGGCACTATATGGACTAAAACAAGCACCCCGAGCTTGGTATAGTCGTATAGAGTCTTATTTTACAAGAGAAGGCTTCGAAAAGTGTCCGTATGAGCATACTCTTTTTATAAAGTCTGGAGCTGCTGGGAAGTTCCTAATTGTCTGCCTGTATGTAGATGATCTCATCTACACAGGGAATGATGAAGATTTATTTAAGAGCTTCAAGCATTCAATGATGGCTGAGTTTGAAATGACTGACCTGGGACTCTTGCATTATTTTCTTAGCATTGAAGTGGTGCAATCTGCAACAGGTATTTTCATTATGCAAAAGAAATATGCTGTGGAGATTTTAGACAGATTTGAGATGAAGACTTGCAATTCAGTTGGACCACCAATTGAACCAGGATTGAAGCTGACTAAGGATCCTAAGGGCAAAAAGGTTGACAACACTTTGTTTAAACAGATTGTTGGAAGCTTGATGTATCTTACAGCAACAAGGCCAGATATTATGTATGCAGTAAGTCTTATTAACAGATATATGGAGCATCCAACTGAGCATCATCTTTCTGCTGCAAAAAGAGTGTTACGCTACTTGAAAGGTACAATTGATTTTGGTATCTTTTATAAGAAGGGAGAAATGTCAGAACTTGTTGGGTTTACTGATAGTGACTATGCTGGAGATTTGGATGACCGAAGGAGCACTTCTGGCTATGTGTTCATGTTGAGTGGAAATAAATCATGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

713

Amino Acids

81.3

Weight (kDa)

8.38

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 145 - 225 5.8e-28 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 268 - 323 1.2e-15 GAG-pre-integrase domain
rve PF00665 339 - 438 1.7e-16 Integrase core domain
RVT_2 PF07727 451 - 598 6e-40 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1088, 1523, 2019
AciI CCGC 1 cut(s) 1299
AclI AACGTT 1 cut(s) 1091
AclWI GGATC 3 cut(s) 259, 1811, 1824
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 1167
AfaI GTAC 2 cut(s) 1403, 1996
AfiI CCNNNNNNNGG 2 cut(s) 393, 1449
AjiI CACGTC 2 cut(s) 188, 242
AjnI CCWGG 2 cut(s) 1653, 1795
AjuI GAANNNNNNNTTGG 2 cut(s) 1349, 1381
AleI CACNNNNGTG 1 cut(s) 940
Alw21I GWGCWC 2 cut(s) 1009, 2096
Alw26I GTCTC 5 cut(s) 154, 522, 547, 800, 931
AlwI GGATC 3 cut(s) 259, 1811, 1824
Ama87I CYCGRG 2 cut(s) 735, 1443
AoxI GGCC 2 cut(s) 301, 1892
ApeKI GCWGC 4 cut(s) 1301, 1378, 1535, 1964
ApoI RAATTY 1 cut(s) 11
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 788, 1781
AsuHPI GGTGA 2 cut(s) 916, 1288
AsuII TTCGAA 1 cut(s) 1491
AvaI CYCGRG 2 cut(s) 735, 1443
AvaII GGWCC 2 cut(s) 788, 1781
AxyI CCTNAGG 1 cut(s) 1821
BalI TGGCCA 1 cut(s) 303
BamHI GGATCC 1 cut(s) 1816
BanII GRGCYC 1 cut(s) 1009
BbsI GAAGAC 3 cut(s) 905, 1121, 1769
Bbv12I GWGCWC 2 cut(s) 1009, 2096
BbvI GCAGC 4 cut(s) 1313, 1390, 1522, 1951
BccI CCATC 3 cut(s) 779, 940, 1624
BcgI CGANNNNNNTGC 2 cut(s) 1208, 1242
BciT130I CCWGG 2 cut(s) 1655, 1797
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 5 cut(s) 154, 522, 547, 800, 931
BfmI CTRYAG 1 cut(s) 878
BisI GCNGC 4 cut(s) 1302, 1379, 1536, 1965
BlpI GCTNAGC 1 cut(s) 644
BlsI GCNGC 4 cut(s) 1303, 1380, 1537, 1966
Bme1390I CCNGG 2 cut(s) 1655, 1797
Bme18I GGWCC 2 cut(s) 788, 1781
BmeT110I CYCGRG 2 cut(s) 735, 1443
BmgBI CACGTC 2 cut(s) 188, 242
BmgT120I GGNCC 2 cut(s) 788, 1781
BmiI GGNNCC 1 cut(s) 1818
BmrFI CCNGG 2 cut(s) 1655, 1797
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 4 cut(s) 440, 868, 1948, 1960
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 3 cut(s) 905, 1121, 1769
BplI GAGNNNNNCTC 4 cut(s) 687, 719, 1229, 1261
BpmI CTGGAG 3 cut(s) 147, 1551, 2091
Bpu1102I GCTNAGC 1 cut(s) 644
Bpu14I TTCGAA 1 cut(s) 1491
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 1654
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 1449
Bse1I ACTGG 2 cut(s) 164, 606
Bse21I CCTNAGG 1 cut(s) 1821
BseBI CCWGG 2 cut(s) 1655, 1797
BseDI CCNNGG 1 cut(s) 1654
BseGI GGATG 4 cut(s) 455, 502, 1939, 2086
BseLI CCNNNNNNNGG 2 cut(s) 393, 1449
BseMII CTCAG 4 cut(s) 27, 354, 1626, 1938
BseNI ACTGG 2 cut(s) 164, 606
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 1313, 1390, 1522, 1951
BseYI CCCAGC 1 cut(s) 1538
BsgI GTGCAG 1 cut(s) 1397
BshFI GGCC 2 cut(s) 303, 1894
BsiHKAI GWGCWC 2 cut(s) 1009, 2096
BsiHKCI CYCGRG 2 cut(s) 735, 1443
BslFI GGGAC 1 cut(s) 1671
BslI CCNNNNNNNGG 2 cut(s) 393, 1449
BsmAI GTCTC 5 cut(s) 154, 522, 547, 800, 931
BsmFI GGGAC 1 cut(s) 1671
BsmI GAATGC 2 cut(s) 284, 1621
BsnI GGCC 2 cut(s) 303, 1894
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 735, 1443
Bsp119I TTCGAA 1 cut(s) 1491
Bsp1286I GDGCHC 2 cut(s) 1009, 2096
Bsp1407I TGTACA 1 cut(s) 1401
Bsp143I GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
Bsp1720I GCTNAGC 1 cut(s) 644
BspACI CCGC 1 cut(s) 1299
BspANI GGCC 2 cut(s) 303, 1894
BspCNI CTCAG 4 cut(s) 28, 355, 1627, 1939
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 1818
BspPI GGATC 3 cut(s) 259, 1811, 1824
BspT104I TTCGAA 1 cut(s) 1491
BspTNI GGTCTC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 1401
BsrI ACTGG 2 cut(s) 164, 606
BssECI CCNNGG 1 cut(s) 1654
BssMI GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
Bst2UI CCWGG 2 cut(s) 1655, 1797
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 3 cut(s) 157, 193, 1386
BstAUI TGTACA 1 cut(s) 1401
BstBI TTCGAA 1 cut(s) 1491
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 9 cut(s) 36, 363, 644, 887, 1635, 1676, 1812, 1821, 1947
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 4 cut(s) 455, 502, 1939, 2086
BstKTI GATC 6 cut(s) 254, 353, 979, 1228, 1576, 1819
BstMAI GTCTC 5 cut(s) 154, 522, 547, 800, 931
BstMBI GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
BstMWI GCNNNNNNNGC 5 cut(s) 288, 1004, 1157, 1445, 2100
BstNI CCWGG 2 cut(s) 1655, 1797
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 1653, 1795
BstSFI CTRYAG 1 cut(s) 878
BstV1I GCAGC 4 cut(s) 1313, 1390, 1522, 1951
BstV2I GAAGAC 3 cut(s) 905, 1121, 1769
BstX2I RGATCY 1 cut(s) 1816
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 1816
Bsu36I CCTNAGG 1 cut(s) 1821
BsuRI GGCC 2 cut(s) 303, 1894
BtrI CACGTC 2 cut(s) 188, 242
BtsCI GGATG 4 cut(s) 455, 502, 1939, 2086
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 788, 1781
Csp6I GTAC 2 cut(s) 1402, 1995
CviAII CATG 9 cut(s) 47, 98, 399, 834, 901, 999, 1119, 2113, 2133
CviQI GTAC 2 cut(s) 1402, 1995
DdeI CTNAG 9 cut(s) 36, 363, 644, 887, 1635, 1676, 1812, 1821, 1947
DpnI GATC 6 cut(s) 253, 352, 978, 1227, 1575, 1818
DpnII GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
DraI TTTAAA 1 cut(s) 1852
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 157, 193, 1386
EarI CTCTTC 3 cut(s) 157, 193, 1386
Ecl136II GAGCTC 1 cut(s) 1007
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 788, 1781
Eco53kI GAGCTC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 1167
Eco81I CCTNAGG 1 cut(s) 1821
Eco88I CYCGRG 2 cut(s) 735, 1443
EcoICRI GAGCTC 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 1653, 1795
EcoT22I ATGCAT 2 cut(s) 6, 1000
EcoT38I GRGCYC 1 cut(s) 1009
FaeI CATG 9 cut(s) 50, 101, 402, 837, 904, 1002, 1122, 2116, 2136
FalI AAGNNNNNCTT 2 cut(s) 2080, 2112
FaqI GGGAC 1 cut(s) 1671
FatI CATG 9 cut(s) 46, 97, 398, 833, 900, 998, 1118, 2112, 2132
FauNDI CATATG 1 cut(s) 462
FbaI TGATCA 1 cut(s) 976
Fnu4HI GCNGC 4 cut(s) 1302, 1379, 1536, 1965
FokI GGATG 4 cut(s) 462, 509, 1926, 2093
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 4 cut(s) 1302, 1379, 1536, 1965
GluI GCNGC 4 cut(s) 1302, 1379, 1536, 1965
GsaI CCCAGC 1 cut(s) 1542
GsuI CTGGAG 3 cut(s) 147, 1551, 2091
HaeIII GGCC 2 cut(s) 303, 1894
Hin1II CATG 9 cut(s) 50, 101, 402, 837, 904, 1002, 1122, 2116, 2136
HincII GTYRAC 2 cut(s) 656, 1837
HindII GTYRAC 2 cut(s) 656, 1837
HindIII AAGCTT 3 cut(s) 138, 1149, 1867
HinfI GANTC 8 cut(s) 41, 213, 443, 500, 713, 883, 1466, 1659
HphI GGTGA 2 cut(s) 916, 1288
Hpy166II GTNNAC 4 cut(s) 656, 1402, 1837, 2052
Hpy188I TCNGA 6 cut(s) 316, 490, 527, 1036, 1147, 2038
Hpy188III TCNNGA 8 cut(s) 98, 228, 447, 623, 779, 974, 1354, 1530
Hpy8I GTNNAC 4 cut(s) 656, 1402, 1837, 2052
HpyAV CCTTC 7 cut(s) 139, 1281, 1390, 1408, 1478, 2017, 2082
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 3 cut(s) 187, 241, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 288, 1004, 1157, 1445, 2100
HpyF3I CTNAG 9 cut(s) 36, 363, 644, 887, 1635, 1676, 1812, 1821, 1947
HpySE526I ACGT 3 cut(s) 187, 241, 1091
Hsp92II CATG 9 cut(s) 50, 101, 402, 837, 904, 1002, 1122, 2116, 2136
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
LmnI GCTCC 4 cut(s) 133, 1532, 1936, 2091
Lsp1109I GCAGC 4 cut(s) 1313, 1390, 1522, 1951
LweI GCATC 4 cut(s) 440, 868, 1948, 1960
MaeII ACGT 3 cut(s) 187, 241, 1091
MaeIII GTNAC 3 cut(s) 904, 1977, 2060
MalI GATC 6 cut(s) 253, 352, 978, 1227, 1575, 1818
MboI GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
MfeI CAATTG 3 cut(s) 286, 1788, 1998
MflI RGATCY 1 cut(s) 1816
MhlI GDGCHC 2 cut(s) 1009, 2096
MlsI TGGCCA 1 cut(s) 303
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 3 cut(s) 877, 1475, 1653
MmeI TCCRAC 6 cut(s) 180, 1082, 1177, 1759, 1843, 1967
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 2 cut(s) 6, 1000
MroXI GAANNNNTTC 1 cut(s) 600
MscI TGGCCA 1 cut(s) 303
MseI TTAA 8 cut(s) 111, 687, 741, 1164, 1209, 1608, 1851, 1923
MslI CAYNNNNRTG 5 cut(s) 297, 465, 838, 940, 1685
Msp20I TGGCCA 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 1655, 1797
MssI GTTTAAAC 1 cut(s) 1852
MunI CAATTG 3 cut(s) 286, 1788, 1998
Mva1269I GAATGC 2 cut(s) 284, 1621
MvaI CCWGG 2 cut(s) 1655, 1797
MwoI GCNNNNNNNGC 5 cut(s) 288, 1004, 1157, 1445, 2100
NdeI CATATG 1 cut(s) 462
NdeII GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
NlaIII CATG 9 cut(s) 50, 101, 402, 837, 904, 1002, 1122, 2116, 2136
NlaIV GGNNCC 1 cut(s) 1818
NmuCI GTSAC 2 cut(s) 904, 2060
NsiI ATGCAT 2 cut(s) 6, 1000
NspI RCATGY 1 cut(s) 402
NspV TTCGAA 1 cut(s) 1491
OliI CACNNNNGTG 1 cut(s) 940
PagI TCATGA 1 cut(s) 97
PctI GAATGC 2 cut(s) 284, 1621
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 5 cut(s) 41, 213, 443, 500, 713
PflFI GACNNNGTC 2 cut(s) 189, 243
PkrI GCNGC 4 cut(s) 1303, 1380, 1537, 1966
PleI GAGTC 3 cut(s) 877, 1474, 1653
PmeI GTTTAAAC 1 cut(s) 1852
PpsI GAGTC 3 cut(s) 877, 1474, 1653
PshBI ATTAAT 1 cut(s) 111
PsiI TTATAA 3 cut(s) 1088, 1523, 2019
Psp124BI GAGCTC 1 cut(s) 1009
Psp1406I AACGTT 1 cut(s) 1091
Psp6I CCWGG 2 cut(s) 1653, 1795
PspFI CCCAGC 1 cut(s) 1538
PspGI CCWGG 2 cut(s) 1653, 1795
PspN4I GGNNCC 1 cut(s) 1818
PspPI GGNCC 2 cut(s) 788, 1781
PsuI RGATCY 1 cut(s) 1816
PsyI GACNNNGTC 2 cut(s) 189, 243
RsaI GTAC 2 cut(s) 1403, 1996
RsaNI GTAC 2 cut(s) 1402, 1995
RseI CAYNNNNRTG 5 cut(s) 297, 465, 838, 940, 1685
SacI GAGCTC 1 cut(s) 1009
SaqAI TTAA 8 cut(s) 111, 687, 741, 1164, 1209, 1608, 1851, 1923
SatI GCNGC 4 cut(s) 1302, 1379, 1536, 1965
Sau3AI GATC 6 cut(s) 251, 350, 976, 1225, 1573, 1816
Sau96I GGNCC 2 cut(s) 788, 1781
SchI GAGTC 3 cut(s) 877, 1475, 1653
ScrFI CCNGG 2 cut(s) 1655, 1797
SduI GDGCHC 2 cut(s) 1009, 2096
SfaNI GCATC 4 cut(s) 440, 868, 1948, 1960
SfcI CTRYAG 1 cut(s) 878
SfuI TTCGAA 1 cut(s) 1491
SinI GGWCC 2 cut(s) 788, 1781
SmiMI CAYNNNNRTG 5 cut(s) 297, 465, 838, 940, 1685
SsiI CCGC 1 cut(s) 1299
SspI AATATT 1 cut(s) 274
SstI GAGCTC 1 cut(s) 1009
StyD4I CCNGG 2 cut(s) 1653, 1795
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 3 cut(s) 190, 244, 1094
TaqI TCGA 3 cut(s) 32, 65, 1491
TaqII GACCGA 1 cut(s) 2100
TatI WGTACW 1 cut(s) 1401
TfiI GAWTC 5 cut(s) 41, 213, 443, 500, 713
Tru1I TTAA 8 cut(s) 111, 687, 741, 1164, 1209, 1608, 1851, 1923
Tru9I TTAA 8 cut(s) 111, 687, 741, 1164, 1209, 1608, 1851, 1923
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 904, 2060
TseI GCWGC 4 cut(s) 1301, 1378, 1535, 1964
Tsp45I GTSAC 2 cut(s) 904, 2060
TspGWI ACGGA 1 cut(s) 1491
TspRI CASTG 1 cut(s) 613
Tth111I GACNNNGTC 2 cut(s) 189, 243
VpaK11BI GGWCC 2 cut(s) 788, 1781
VspI ATTAAT 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 600
Zsp2I ATGCAT 2 cut(s) 6, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.