Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000154

Physical Location & Seq

Genomic Coordinates Forward (+)

45473267 .. 45473782

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACGGATCTTGGTAAGATGCGTTATTTCCTTGGAGTCGAGGTTGTTCAGAATGAAGATGGGATTTACATTTGCCAAAGGAAGTATGCAAAGGAAGTATTGGAGAGATTCGGAATGGAGAAGAGCAACTCATCTAGGAACCCTATTGTCCCTGGATTCAAGTTGATGAAAGATGAAAGTGGTGTGAAGGTGGACGCCACTATGTATAAGCAGGTTGTTGGCTGTTTGATGTACTTGACAGCTACTAGGCCAGATCTCATGTATGTGATAAGTCTAATCAGCAGGTTTATGGGAAGTCCGACTGAGCTACACATGCAAGCAGTTAAAAGAGTCCTCAGGTATCTCAAAGGCACTGTTGATTTGGGGATTCTGTACAAACGAAATGGGAACGAAAAGCTTGAGGCATACACGGATAGTGACTATGCAGGTGATCTAGATGACCGGAGGAGCACATCCGGATACGTGTTTCTGCTTAGCACTGGTGAGTTTCATGGTCTTCTAAGAAGCAACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

171

Amino Acids

19.48

Weight (kDa)

8.77

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	1 - 50	6.8e-08	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica	MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis	pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis	RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata	RLG00000026946
rosa_roxburghii	Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha	Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana	Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	3 cut(s)	202, 273, 416
AccIII	TCCGGA	1 cut(s)	455
AclWI	GGATC	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	233, 374
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	242, 307, 397
AluI	AGCT	3 cut(s)	242, 307, 397
Alw21I	GWGCWC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	455
AoxI	GGCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	440, 494
AxyI	CCTNAGG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	452
BfaI	CTAG	3 cut(s)	135, 246, 434
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	3 cut(s)	202, 273, 416
BfuI	GTATCC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	463
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	31, 151
BsaWI	WCCGGW	2 cut(s)	441, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	31, 151
BseGI	GGATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	294, 349
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	442, 456
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	455
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	7, 253, 430
Bsp1720I	GCTNAGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	295, 348
BspEI	TCCGGA	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	3 cut(s)	202, 273, 416
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	31, 151
BssMI	GATC	3 cut(s)	7, 253, 430
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	303, 335, 473, 500
BstF5I	GGATG	1 cut(s)	452
BstKTI	GATC	3 cut(s)	10, 256, 433
BstMBI	GATC	3 cut(s)	7, 253, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	7, 253
BstYI	RGATCY	2 cut(s)	7, 253
Bsu36I	CCTNAGG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	351, 477
BveI	ACCTGC	3 cut(s)	202, 273, 416
Cac8I	GCNNGC	1 cut(s)	318
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	232, 373
CviAII	CATG	3 cut(s)	259, 313, 491
CviJI	RGCY	5 cut(s)	222, 242, 250, 307, 397
CviKI_1	RGCY	5 cut(s)	222, 242, 250, 307, 397
CviQI	GTAC	2 cut(s)	232, 373
DdeI	CTNAG	4 cut(s)	303, 335, 473, 500
DpnI	GATC	3 cut(s)	9, 255, 432
DpnII	GATC	3 cut(s)	7, 253, 430
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	262, 316, 494
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	258, 312, 490
FokI	GGATG	1 cut(s)	439
FspBI	CTAG	3 cut(s)	135, 246, 434
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	442, 456
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	262, 316, 494
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	5 cut(s)	36, 108, 156, 330, 367
HpaII	CCGG	2 cut(s)	442, 456
HphI	GGTGA	2 cut(s)	440, 494
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	51, 113, 300
Hpy188III	TCNNGA	2 cut(s)	434, 456
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	89, 316, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	4 cut(s)	303, 335, 473, 500
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	262, 316, 494
Kpn2I	TCCGGA	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	7, 253, 430
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	447
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	3 cut(s)	135, 246, 434
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	9, 255, 432
MboI	GATC	3 cut(s)	7, 253, 430
MboII	GAAGA	3 cut(s)	68, 133, 488
MflI	RGATCY	2 cut(s)	7, 253
MhlI	GDGCHC	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	45, 339
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	34, 344, 394, 438
MroI	TCCGGA	1 cut(s)	455
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	442, 456
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	3 cut(s)	7, 253, 430
NlaIII	CATG	3 cut(s)	262, 316, 494
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	108, 156, 367
PleI	GAGTC	2 cut(s)	44, 338
PpsI	GAGTC	2 cut(s)	44, 338
Ppu21I	YACGTR	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	7, 253
RsaI	GTAC	2 cut(s)	233, 374
RsaNI	GTAC	2 cut(s)	232, 373
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	7, 253, 430
SchI	GAGTC	2 cut(s)	45, 339
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SspMI	CTAG	3 cut(s)	135, 246, 434
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	39
TatI	WGTACW	2 cut(s)	231, 372
TfiI	GAWTC	3 cut(s)	108, 156, 367
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	358, 484
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	69, 182, 189, 479
TspGWI	ACGGA	2 cut(s)	20, 425
TspRI	CASTG	2 cut(s)	358, 484
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	3 cut(s)	135, 246, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.