DNA RNA polymerases superfamily protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| gag_pre-integrs | PF13976 | 51 - 97 | 5.1e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 112 - 219 | 4.7e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 292 - 354 | 4.8e-12 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 531 - 774 | 1e-77 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 651, 1746 |
| AarI | CACCTGC | 1 cut(s) | 2666 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2722 |
| Acc36I | ACCTGC | 3 cut(s) | 244, 555, 2666 |
| Acc65I | GGTACC | 2 cut(s) | 1977, 2532 |
| AccB1I | GGYRCC | 2 cut(s) | 1977, 2532 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1974, 2691 |
| AccI | GTMKAC | 2 cut(s) | 270, 569 |
| AclWI | GGATC | 3 cut(s) | 1496, 2559, 2990 |
| AcsI | RAATTY | 7 cut(s) | 108, 143, 473, 740, 977, 1878, 2788 |
| AcuI | CTGAAG | 2 cut(s) | 2558, 2877 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1974, 2691 |
| AflII | CTTAAG | 2 cut(s) | 1955, 2048 |
| AflIII | ACRYGT | 1 cut(s) | 2556 |
| AjnI | CCWGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1766, 1798 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 295, 327 |
| Alw26I | GTCTC | 4 cut(s) | 1358, 1398, 1745, 1771 |
| AlwI | GGATC | 3 cut(s) | 1496, 2559, 2990 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3023 |
| AoxI | GGCC | 5 cut(s) | 1797, 2441, 2494, 2601, 2828 |
| ApeKI | GCWGC | 6 cut(s) | 1241, 1298, 1373, 1891, 2335, 3041 |
| ApoI | RAATTY | 7 cut(s) | 108, 143, 473, 740, 977, 1878, 2788 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1837, 1869 |
| Asp718I | GGTACC | 2 cut(s) | 1977, 2532 |
| AspS9I | GGNCC | 4 cut(s) | 362, 593, 1159, 1798 |
| AsuHPI | GGTGA | 4 cut(s) | 563, 718, 2318, 2848 |
| AvaII | GGWCC | 3 cut(s) | 362, 593, 1159 |
| BanI | GGYRCC | 2 cut(s) | 1977, 2532 |
| BbsI | GAAGAC | 3 cut(s) | 1233, 2549, 2883 |
| BbvI | GCAGC | 6 cut(s) | 1253, 1310, 1385, 1903, 2322, 3028 |
| BccI | CCATC | 4 cut(s) | 902, 1075, 1670, 1828 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1220, 1254 |
| BciT130I | CCWGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| BciVI | GTATCC | 1 cut(s) | 2651 |
| BclI | TGATCA | 1 cut(s) | 1351 |
| BcoDI | GTCTC | 4 cut(s) | 1358, 1398, 1745, 1771 |
| BfaI | CTAG | 6 cut(s) | 300, 846, 1487, 1802, 2198, 2672 |
| BfmI | CTRYAG | 2 cut(s) | 1635, 2820 |
| BfrI | CTTAAG | 2 cut(s) | 1955, 2048 |
| BfuAI | ACCTGC | 3 cut(s) | 244, 555, 2666 |
| BfuI | GTATCC | 1 cut(s) | 2651 |
| BisI | GCNGC | 6 cut(s) | 1242, 1299, 1374, 1892, 2336, 3042 |
| BlpI | GCTNAGC | 1 cut(s) | 1629 |
| BlsI | GCNGC | 6 cut(s) | 1243, 1300, 1375, 1893, 2337, 3043 |
| BmcAI | AGTACT | 1 cut(s) | 2921 |
| Bme1390I | CCNGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| Bme18I | GGWCC | 3 cut(s) | 362, 593, 1159 |
| BmgT120I | GGNCC | 4 cut(s) | 362, 593, 1159, 1798 |
| BmiI | GGNNCC | 4 cut(s) | 594, 1979, 2534, 2683 |
| BmrFI | CCNGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| BpiI | GAAGAC | 3 cut(s) | 1233, 2549, 2883 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1742, 1774 |
| BpmI | CTGGAG | 1 cut(s) | 1746 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1713 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1629 |
| BpuEI | CTTGAG | 5 cut(s) | 1429, 1841, 1919, 1967, 2612 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1744, 1774 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1974, 2691 |
| Bse1I | ACTGG | 6 cut(s) | 371, 517, 1282, 1763, 2055, 3017 |
| Bse3DI | GCAATG | 7 cut(s) | 731, 1095, 1147, 1236, 1566, 1630, 1979 |
| BseBI | CCWGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseGI | GGATG | 7 cut(s) | 1573, 1646, 1675, 1843, 2615, 2641, 2953 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1974, 2691 |
| BseMI | GCAATG | 7 cut(s) | 731, 1095, 1147, 1236, 1566, 1630, 1979 |
| BseMII | CTCAG | 1 cut(s) | 486 |
| BseNI | ACTGG | 6 cut(s) | 371, 517, 1282, 1763, 2055, 3017 |
| BseXI | GCAGC | 6 cut(s) | 1253, 1310, 1385, 1903, 2322, 3028 |
| BsgI | GTGCAG | 2 cut(s) | 2321, 3027 |
| BshFI | GGCC | 5 cut(s) | 1799, 2443, 2496, 2603, 2830 |
| BshNI | GGYRCC | 2 cut(s) | 1977, 2532 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1974, 2691 |
| BsmAI | GTCTC | 4 cut(s) | 1358, 1398, 1745, 1771 |
| BsmI | GAATGC | 2 cut(s) | 1172, 1781 |
| BsnI | GGCC | 5 cut(s) | 1799, 2443, 2496, 2603, 2830 |
| Bsp1407I | TGTACA | 1 cut(s) | 2435 |
| Bsp143I | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1629 |
| BspANI | GGCC | 5 cut(s) | 1799, 2443, 2496, 2603, 2830 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspLI | GGNNCC | 4 cut(s) | 594, 1979, 2534, 2683 |
| BspMI | ACCTGC | 3 cut(s) | 244, 555, 2666 |
| BspPI | GGATC | 3 cut(s) | 1496, 2559, 2990 |
| BspT107I | GGYRCC | 2 cut(s) | 1977, 2532 |
| BspTI | CTTAAG | 2 cut(s) | 1955, 2048 |
| BsrDI | GCAATG | 7 cut(s) | 731, 1095, 1147, 1236, 1566, 1630, 1979 |
| BsrGI | TGTACA | 1 cut(s) | 2435 |
| BsrI | ACTGG | 6 cut(s) | 371, 517, 1282, 1763, 2055, 3017 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssMI | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| BssNAI | GTATAC | 1 cut(s) | 570 |
| BssT1I | CCWWGG | 1 cut(s) | 240 |
| Bst1107I | GTATAC | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| Bst4CI | ACNGT | 2 cut(s) | 956, 2846 |
| Bst6I | CTCTTC | 1 cut(s) | 2946 |
| BstAFI | CTTAAG | 2 cut(s) | 1955, 2048 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1926 |
| BstAUI | TGTACA | 1 cut(s) | 2435 |
| BstC8I | GCNNGC | 6 cut(s) | 914, 1931, 1962, 2110, 2288, 3039 |
| BstDEI | CTNAG | 6 cut(s) | 495, 1629, 1713, 2322, 2355, 2547 |
| BstF5I | GGATG | 7 cut(s) | 1573, 1646, 1675, 1843, 2615, 2641, 2953 |
| BstKTI | GATC | 7 cut(s) | 539, 1354, 1504, 2554, 2958, 2986, 2998 |
| BstMAI | GTCTC | 4 cut(s) | 1358, 1398, 1745, 1771 |
| BstMBI | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 282, 1298, 1342, 1805, 1926, 2681 |
| BstNI | CCWGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| BstNSI | RCATGY | 4 cut(s) | 2290, 2560, 2774, 3041 |
| BstSCI | CCNGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| BstSFI | CTRYAG | 2 cut(s) | 1635, 2820 |
| BstV1I | GCAGC | 6 cut(s) | 1253, 1310, 1385, 1903, 2322, 3028 |
| BstV2I | GAAGAC | 3 cut(s) | 1233, 2549, 2883 |
| BstX2I | RGATCY | 1 cut(s) | 2995 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1708 |
| BstYI | RGATCY | 1 cut(s) | 2995 |
| BstZ17I | GTATAC | 1 cut(s) | 570 |
| BsuI | GTATCC | 1 cut(s) | 2651 |
| BsuRI | GGCC | 5 cut(s) | 1799, 2443, 2496, 2603, 2830 |
| BtsCI | GGATG | 7 cut(s) | 1573, 1646, 1675, 1843, 2615, 2641, 2953 |
| BtsI | GCAGTG | 2 cut(s) | 2868, 2934 |
| BtsIMutI | CAGTG | 4 cut(s) | 2062, 2354, 2868, 2934 |
| BveI | ACCTGC | 3 cut(s) | 244, 555, 2666 |
| Cac8I | GCNNGC | 6 cut(s) | 914, 1931, 1962, 2110, 2288, 3039 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3023 |
| Cfr13I | GGNCC | 4 cut(s) | 362, 593, 1159, 1798 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 990, 1025, 2388, 2423 |
| DdeI | CTNAG | 6 cut(s) | 495, 1629, 1713, 2322, 2355, 2547 |
| DpnI | GATC | 7 cut(s) | 538, 1353, 1503, 2553, 2957, 2985, 2997 |
| DpnII | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| DraI | TTTAAA | 1 cut(s) | 852 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2722 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2722 |
| Eam1104I | CTCTTC | 1 cut(s) | 2946 |
| EarI | CTCTTC | 1 cut(s) | 2946 |
| Eco130I | CCWWGG | 1 cut(s) | 240 |
| Eco147I | AGGCCT | 3 cut(s) | 2443, 2603, 2830 |
| Eco47I | GGWCC | 3 cut(s) | 362, 593, 1159 |
| Eco57I | CTGAAG | 2 cut(s) | 2558, 2877 |
| EcoO109I | RGGNCCY | 1 cut(s) | 593 |
| EcoRII | CCWGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| EcoT14I | CCWWGG | 1 cut(s) | 240 |
| EcoT22I | ATGCAT | 5 cut(s) | 157, 1783, 2617, 2776, 2857 |
| ErhI | CCWWGG | 1 cut(s) | 240 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2696, 2728 |
| FauNDI | CATATG | 1 cut(s) | 3048 |
| FbaI | TGATCA | 1 cut(s) | 1351 |
| FblI | GTMKAC | 2 cut(s) | 270, 569 |
| Fnu4HI | GCNGC | 6 cut(s) | 1242, 1299, 1374, 1892, 2336, 3042 |
| FokI | GGATG | 7 cut(s) | 1580, 1653, 1682, 1850, 2602, 2648, 2960 |
| Fsp4HI | GCNGC | 6 cut(s) | 1242, 1299, 1374, 1892, 2336, 3042 |
| FspBI | CTAG | 6 cut(s) | 300, 846, 1487, 1802, 2198, 2672 |
| GluI | GCNGC | 6 cut(s) | 1242, 1299, 1374, 1892, 2336, 3042 |
| GsuI | CTGGAG | 1 cut(s) | 1746 |
| HaeIII | GGCC | 5 cut(s) | 1799, 2443, 2496, 2603, 2830 |
| HincII | GTYRAC | 1 cut(s) | 2727 |
| HindII | GTYRAC | 1 cut(s) | 2727 |
| HindIII | AAGCTT | 6 cut(s) | 465, 756, 914, 1107, 1962, 3009 |
| HinfI | GANTC | 5 cut(s) | 920, 1013, 1207, 1478, 2897 |
| HphI | GGTGA | 4 cut(s) | 563, 718, 2318, 2848 |
| Hpy166II | GTNNAC | 8 cut(s) | 271, 326, 570, 1129, 1602, 2263, 2566, 2727 |
| Hpy188I | TCNGA | 9 cut(s) | 454, 536, 541, 676, 1189, 1447, 1787, 2629, 2896 |
| Hpy188III | TCNNGA | 5 cut(s) | 426, 1217, 1843, 1936, 2655 |
| Hpy8I | GTNNAC | 8 cut(s) | 271, 326, 570, 1129, 1602, 2263, 2566, 2727 |
| HpyAV | CCTTC | 3 cut(s) | 1727, 2164, 2515 |
| HpyCH4III | ACNGT | 2 cut(s) | 956, 2846 |
| HpyCH4IV | ACGT | 1 cut(s) | 2723 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 282, 1298, 1342, 1805, 1926, 2681 |
| HpyF3I | CTNAG | 6 cut(s) | 495, 1629, 1713, 2322, 2355, 2547 |
| HpySE526I | ACGT | 1 cut(s) | 2723 |
| KpnI | GGTACC | 2 cut(s) | 1981, 2536 |
| Ksp22I | TGATCA | 1 cut(s) | 1351 |
| Kzo9I | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| LmnI | GCTCC | 3 cut(s) | 2061, 2412, 2681 |
| Lsp1109I | GCAGC | 6 cut(s) | 1253, 1310, 1385, 1903, 2322, 3028 |
| MaeI | CTAG | 6 cut(s) | 300, 846, 1487, 1802, 2198, 2672 |
| MaeII | ACGT | 1 cut(s) | 2723 |
| MaeIII | GTNAC | 3 cut(s) | 434, 459, 836 |
| MalI | GATC | 7 cut(s) | 538, 1353, 1503, 2553, 2957, 2985, 2997 |
| MboI | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| MflI | RGATCY | 1 cut(s) | 2995 |
| MlyI | GAGTC | 1 cut(s) | 1022 |
| MmeI | TCCRAC | 1 cut(s) | 2346 |
| Mph1103I | ATGCAT | 5 cut(s) | 157, 1783, 2617, 2776, 2857 |
| MslI | CAYNNNNRTG | 1 cut(s) | 861 |
| MspA1I | CMGCKG | 1 cut(s) | 1301 |
| MspCI | CTTAAG | 2 cut(s) | 1955, 2048 |
| MspR9I | CCNGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| Mva1269I | GAATGC | 2 cut(s) | 1172, 1781 |
| MvaI | CCWGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 282, 1298, 1342, 1805, 1926, 2681 |
| NdeI | CATATG | 1 cut(s) | 3048 |
| NdeII | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| NlaIV | GGNNCC | 4 cut(s) | 594, 1979, 2534, 2683 |
| NmuCI | GTSAC | 1 cut(s) | 459 |
| NsiI | ATGCAT | 5 cut(s) | 157, 1783, 2617, 2776, 2857 |
| NspI | RCATGY | 4 cut(s) | 2290, 2560, 2774, 3041 |
| PaeI | GCATGC | 2 cut(s) | 2290, 3041 |
| PaqCI | CACCTGC | 1 cut(s) | 2666 |
| PceI | AGGCCT | 3 cut(s) | 2443, 2603, 2830 |
| PciI | ACATGT | 1 cut(s) | 2556 |
| PctI | GAATGC | 2 cut(s) | 1172, 1781 |
| PfeI | GAWTC | 4 cut(s) | 920, 1207, 1478, 2897 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1974, 2691 |
| PfoI | TCCNGGA | 1 cut(s) | 1155 |
| PkrI | GCNGC | 6 cut(s) | 1243, 1300, 1375, 1893, 2337, 3043 |
| PleI | GAGTC | 1 cut(s) | 1021 |
| PpsI | GAGTC | 1 cut(s) | 1021 |
| PpuMI | RGGWCCY | 1 cut(s) | 593 |
| PscI | ACATGT | 1 cut(s) | 2556 |
| PsiI | TTATAA | 2 cut(s) | 651, 1746 |
| Psp5II | RGGWCCY | 1 cut(s) | 593 |
| Psp6I | CCWGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| PspGI | CCWGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| PspN4I | GGNNCC | 4 cut(s) | 594, 1979, 2534, 2683 |
| PspPI | GGNCC | 4 cut(s) | 362, 593, 1159, 1798 |
| PspPPI | RGGWCCY | 1 cut(s) | 593 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1287, 1319 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3023 |
| PsuI | RGATCY | 1 cut(s) | 2995 |
| PvuII | CAGCTG | 1 cut(s) | 1301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 861 |
| SatI | GCNGC | 6 cut(s) | 1242, 1299, 1374, 1892, 2336, 3042 |
| Sau3AI | GATC | 7 cut(s) | 536, 1351, 1501, 2551, 2955, 2983, 2995 |
| Sau96I | GGNCC | 4 cut(s) | 362, 593, 1159, 1798 |
| ScaI | AGTACT | 1 cut(s) | 2921 |
| SchI | GAGTC | 1 cut(s) | 1022 |
| ScrFI | CCNGG | 4 cut(s) | 1133, 1157, 1702, 1969 |
| SfcI | CTRYAG | 2 cut(s) | 1635, 2820 |
| SinI | GGWCC | 3 cut(s) | 362, 593, 1159 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 861 |
| SmlI | CTYRAG | 7 cut(s) | 1408, 1820, 1934, 1955, 1982, 2048, 2591 |
| SmoI | CTYRAG | 7 cut(s) | 1408, 1820, 1934, 1955, 1982, 2048, 2591 |
| SphI | GCATGC | 2 cut(s) | 2290, 3041 |
| SseBI | AGGCCT | 3 cut(s) | 2443, 2603, 2830 |
| SspI | AATATT | 2 cut(s) | 79, 2119 |
| SspMI | CTAG | 6 cut(s) | 300, 846, 1487, 1802, 2198, 2672 |
| StuI | AGGCCT | 3 cut(s) | 2443, 2603, 2830 |
| StyD4I | CCNGG | 4 cut(s) | 1131, 1155, 1700, 1967 |
| StyI | CCWWGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 2 cut(s) | 956, 2846 |
| TaiI | ACGT | 1 cut(s) | 2726 |
| TaqI | TCGA | 1 cut(s) | 2958 |
| TatI | WGTACW | 5 cut(s) | 377, 606, 1339, 2435, 2919 |
| TfiI | GAWTC | 4 cut(s) | 920, 1207, 1478, 2897 |
| TscAI | CASTG | 4 cut(s) | 2062, 2354, 2868, 2934 |
| TseFI | GTSAC | 1 cut(s) | 459 |
| TseI | GCWGC | 6 cut(s) | 1241, 1298, 1373, 1891, 2335, 3041 |
| Tsp45I | GTSAC | 1 cut(s) | 459 |
| TspGWI | ACGGA | 1 cut(s) | 681 |
| TspRI | CASTG | 4 cut(s) | 2062, 2354, 2868, 2934 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1974, 2691 |
| Vha464I | CTTAAG | 2 cut(s) | 1955, 2048 |
| VpaK11BI | GGWCC | 3 cut(s) | 362, 593, 1159 |
| XapI | RAATTY | 7 cut(s) | 108, 143, 473, 740, 977, 1878, 2788 |
| XceI | RCATGY | 4 cut(s) | 2290, 2560, 2774, 3041 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 744 |
| XmiI | GTMKAC | 2 cut(s) | 270, 569 |
| XspI | CTAG | 6 cut(s) | 300, 846, 1487, 1802, 2198, 2672 |
| ZrmI | AGTACT | 1 cut(s) | 2921 |
| Zsp2I | ATGCAT | 5 cut(s) | 157, 1783, 2617, 2776, 2857 |