Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 7 - 144 | 5.3e-29 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 280 - 319 | 6.1e-07 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 372 - 421 | 7.1e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 436 - 536 | 1.3e-14 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| AciI | CCGC | 1 cut(s) | 1607 |
| AclWI | GGATC | 2 cut(s) | 151, 682 |
| AcsI | RAATTY | 5 cut(s) | 438, 919, 1159, 1463, 2031 |
| AcuI | CTGAAG | 5 cut(s) | 785, 1301, 1995, 2019, 2235 |
| AfaI | GTAC | 8 cut(s) | 137, 562, 589, 773, 847, 903, 1535, 2292 |
| AflII | CTTAAG | 1 cut(s) | 401 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 2 cut(s) | 333, 1263 |
| AlwI | GGATC | 2 cut(s) | 151, 682 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 814, 1079 |
| ApeKI | GCWGC | 3 cut(s) | 808, 1595, 1994 |
| ApoI | RAATTY | 5 cut(s) | 438, 919, 1159, 1463, 2031 |
| AseI | ATTAAT | 1 cut(s) | 258 |
| AspS9I | GGNCC | 1 cut(s) | 1340 |
| AsuHPI | GGTGA | 7 cut(s) | 290, 790, 1039, 1541, 2060, 2230, 2257 |
| AsuII | TTCGAA | 1 cut(s) | 1883 |
| AvaII | GGWCC | 1 cut(s) | 1340 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 333, 366, 837, 870 |
| BbsI | GAAGAC | 2 cut(s) | 2046, 2187 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 3 cut(s) | 820, 1607, 2006 |
| BccI | CCATC | 4 cut(s) | 49, 971, 1141, 1468 |
| BclI | TGATCA | 1 cut(s) | 424 |
| BcoDI | GTCTC | 2 cut(s) | 333, 1263 |
| BfaI | CTAG | 5 cut(s) | 125, 201, 1227, 1874, 2036 |
| BfmI | CTRYAG | 2 cut(s) | 1968, 1992 |
| BfrI | CTTAAG | 1 cut(s) | 401 |
| BglII | AGATCT | 1 cut(s) | 72 |
| BisI | GCNGC | 3 cut(s) | 809, 1596, 1995 |
| BlpI | GCTNAGC | 1 cut(s) | 447 |
| BlsI | GCNGC | 3 cut(s) | 810, 1597, 1996 |
| Bme18I | GGWCC | 1 cut(s) | 1340 |
| BmgT120I | GGNCC | 1 cut(s) | 1340 |
| BmiI | GGNNCC | 2 cut(s) | 1736, 1939 |
| BmrI | ACTGGG | 1 cut(s) | 2294 |
| BmsI | GCATC | 5 cut(s) | 19, 885, 1085, 1186, 2053 |
| BmuI | ACTGGG | 1 cut(s) | 2294 |
| BpiI | GAAGAC | 2 cut(s) | 2046, 2187 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1523, 1555 |
| BpmI | CTGGAG | 2 cut(s) | 1738, 1941 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1023 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 447 |
| Bpu14I | TTCGAA | 1 cut(s) | 1883 |
| BpuEI | CTTGAG | 3 cut(s) | 1334, 1598, 1995 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 1753 |
| Bse1I | ACTGG | 1 cut(s) | 2289 |
| BseDI | CCNNGG | 2 cut(s) | 33, 1753 |
| BseGI | GGATG | 4 cut(s) | 34, 124, 210, 1152 |
| BseMII | CTCAG | 8 cut(s) | 438, 536, 929, 1086, 1617, 1818, 2015, 2287 |
| BseNI | ACTGG | 1 cut(s) | 2289 |
| BseRI | GAGGAG | 1 cut(s) | 2061 |
| BseXI | GCAGC | 3 cut(s) | 820, 1607, 2006 |
| BsgI | GTGCAG | 1 cut(s) | 1269 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BslFI | GGGAC | 3 cut(s) | 1164, 1587, 1771 |
| BsmAI | GTCTC | 2 cut(s) | 333, 1263 |
| BsmFI | GGGAC | 3 cut(s) | 1164, 1587, 1771 |
| Bsp119I | TTCGAA | 1 cut(s) | 1883 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp143I | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 447 |
| Bsp19I | CCATGG | 1 cut(s) | 1753 |
| BspACI | CCGC | 1 cut(s) | 1607 |
| BspCNI | CTCAG | 8 cut(s) | 439, 535, 928, 1085, 1618, 1819, 2016, 2286 |
| BspLI | GGNNCC | 2 cut(s) | 1736, 1939 |
| BspMAI | CTGCAG | 1 cut(s) | 1996 |
| BspPI | GGATC | 2 cut(s) | 151, 682 |
| BspT104I | TTCGAA | 1 cut(s) | 1883 |
| BspTI | CTTAAG | 1 cut(s) | 401 |
| BsrI | ACTGG | 1 cut(s) | 2289 |
| BssECI | CCNNGG | 2 cut(s) | 33, 1753 |
| BssMI | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| BssT1I | CCWWGG | 2 cut(s) | 33, 1753 |
| Bst4CI | ACNGT | 4 cut(s) | 712, 816, 1453, 1856 |
| Bst6I | CTCTTC | 2 cut(s) | 178, 551 |
| BstAFI | CTTAAG | 1 cut(s) | 401 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 110 |
| BstBI | TTCGAA | 1 cut(s) | 1883 |
| BstC8I | GCNNGC | 3 cut(s) | 533, 694, 1259 |
| BstDSI | CCRYGG | 1 cut(s) | 1753 |
| BstF5I | GGATG | 4 cut(s) | 34, 124, 210, 1152 |
| BstKTI | GATC | 8 cut(s) | 75, 146, 161, 427, 677, 831, 1096, 2221 |
| BstMAI | GTCTC | 2 cut(s) | 333, 1263 |
| BstMBI | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 110, 532, 805, 1298, 1315, 2000 |
| BstSFI | CTRYAG | 2 cut(s) | 1968, 1992 |
| BstV1I | GCAGC | 3 cut(s) | 820, 1607, 2006 |
| BstV2I | GAAGAC | 2 cut(s) | 2046, 2187 |
| BstX2I | RGATCY | 3 cut(s) | 72, 143, 674 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1716 |
| BstYI | RGATCY | 3 cut(s) | 72, 143, 674 |
| BtgI | CCRYGG | 1 cut(s) | 1753 |
| BtsCI | GGATG | 4 cut(s) | 34, 124, 210, 1152 |
| BtsI | GCAGTG | 1 cut(s) | 1570 |
| BtsIMutI | CAGTG | 5 cut(s) | 761, 1449, 1570, 1824, 1861 |
| Cac8I | GCNNGC | 3 cut(s) | 533, 694, 1259 |
| CaiI | CAGNNNCTG | 2 cut(s) | 814, 1079 |
| Cfr13I | GGNCC | 1 cut(s) | 1340 |
| Csp6I | GTAC | 8 cut(s) | 136, 561, 588, 772, 846, 902, 1534, 2291 |
| CviQI | GTAC | 8 cut(s) | 136, 561, 588, 772, 846, 902, 1534, 2291 |
| DpnI | GATC | 8 cut(s) | 74, 145, 160, 426, 676, 830, 1095, 2220 |
| DpnII | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| DraI | TTTAAA | 1 cut(s) | 1065 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1435 |
| Eam1104I | CTCTTC | 2 cut(s) | 178, 551 |
| EarI | CTCTTC | 2 cut(s) | 178, 551 |
| Eco130I | CCWWGG | 2 cut(s) | 33, 1753 |
| Eco47I | GGWCC | 1 cut(s) | 1340 |
| Eco57I | CTGAAG | 5 cut(s) | 785, 1301, 1995, 2019, 2235 |
| EcoRI | GAATTC | 1 cut(s) | 2031 |
| EcoT14I | CCWWGG | 2 cut(s) | 33, 1753 |
| EcoT22I | ATGCAT | 1 cut(s) | 668 |
| ErhI | CCWWGG | 2 cut(s) | 33, 1753 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 773, 805, 2144, 2176 |
| FaqI | GGGAC | 3 cut(s) | 1164, 1587, 1771 |
| FauI | CCCGC | 1 cut(s) | 1614 |
| FauNDI | CATATG | 1 cut(s) | 274 |
| FbaI | TGATCA | 1 cut(s) | 424 |
| Fnu4HI | GCNGC | 3 cut(s) | 809, 1596, 1995 |
| FokI | GGATG | 4 cut(s) | 41, 131, 217, 1159 |
| Fsp4HI | GCNGC | 3 cut(s) | 809, 1596, 1995 |
| FspBI | CTAG | 5 cut(s) | 125, 201, 1227, 1874, 2036 |
| GluI | GCNGC | 3 cut(s) | 809, 1596, 1995 |
| GsuI | CTGGAG | 2 cut(s) | 1738, 1941 |
| HincII | GTYRAC | 2 cut(s) | 938, 2230 |
| HindII | GTYRAC | 2 cut(s) | 938, 2230 |
| HindIII | AAGCTT | 2 cut(s) | 1290, 2244 |
| HinfI | GANTC | 6 cut(s) | 380, 512, 1271, 1507, 1880, 2113 |
| HphI | GGTGA | 7 cut(s) | 290, 790, 1039, 1541, 2060, 2230, 2257 |
| Hpy166II | GTNNAC | 7 cut(s) | 848, 938, 1013, 1340, 2203, 2230, 2265 |
| Hpy8I | GTNNAC | 7 cut(s) | 848, 938, 1013, 1340, 2203, 2230, 2265 |
| Hpy99I | CGWCG | 1 cut(s) | 1622 |
| HpyCH4III | ACNGT | 4 cut(s) | 712, 816, 1453, 1856 |
| HpyCH4IV | ACGT | 1 cut(s) | 1620 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 110, 532, 805, 1298, 1315, 2000 |
| HpySE526I | ACGT | 1 cut(s) | 1620 |
| Ksp22I | TGATCA | 1 cut(s) | 424 |
| Kzo9I | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| Lsp1109I | GCAGC | 3 cut(s) | 820, 1607, 2006 |
| LweI | GCATC | 5 cut(s) | 19, 885, 1085, 1186, 2053 |
| MaeI | CTAG | 5 cut(s) | 125, 201, 1227, 1874, 2036 |
| MaeII | ACGT | 1 cut(s) | 1620 |
| MaeIII | GTNAC | 5 cut(s) | 1418, 1668, 1850, 1898, 2081 |
| MalI | GATC | 8 cut(s) | 74, 145, 160, 426, 676, 830, 1095, 2220 |
| MboI | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| MfeI | CAATTG | 1 cut(s) | 1794 |
| MflI | RGATCY | 3 cut(s) | 72, 143, 674 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MlyI | GAGTC | 2 cut(s) | 1265, 1501 |
| MmeI | TCCRAC | 3 cut(s) | 731, 1762, 1965 |
| MnlI | CCTC | 8 cut(s) | 88, 836, 1065, 1312, 1358, 1623, 2082, 2270 |
| Mph1103I | ATGCAT | 1 cut(s) | 668 |
| MslI | CAYNNNNRTG | 2 cut(s) | 53, 1329 |
| MspA1I | CMGCKG | 2 cut(s) | 1973, 1997 |
| MspCI | CTTAAG | 1 cut(s) | 401 |
| MunI | CAATTG | 1 cut(s) | 1794 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 110, 532, 805, 1298, 1315, 2000 |
| NcoI | CCATGG | 1 cut(s) | 1753 |
| NdeI | CATATG | 1 cut(s) | 274 |
| NdeII | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| NlaIV | GGNNCC | 2 cut(s) | 1736, 1939 |
| NmuCI | GTSAC | 2 cut(s) | 1850, 2081 |
| NsiI | ATGCAT | 1 cut(s) | 668 |
| NspV | TTCGAA | 1 cut(s) | 1883 |
| PfeI | GAWTC | 4 cut(s) | 380, 512, 1880, 2113 |
| PkrI | GCNGC | 3 cut(s) | 810, 1597, 1996 |
| PleI | GAGTC | 2 cut(s) | 1265, 1501 |
| PpsI | GAGTC | 2 cut(s) | 1265, 1501 |
| PshBI | ATTAAT | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 2 cut(s) | 1736, 1939 |
| PspPI | GGNCC | 1 cut(s) | 1340 |
| PstI | CTGCAG | 1 cut(s) | 1996 |
| PstNI | CAGNNNCTG | 2 cut(s) | 814, 1079 |
| PsuI | RGATCY | 3 cut(s) | 72, 143, 674 |
| PvuII | CAGCTG | 2 cut(s) | 1973, 1997 |
| RsaI | GTAC | 8 cut(s) | 137, 562, 589, 773, 847, 903, 1535, 2292 |
| RsaNI | GTAC | 8 cut(s) | 136, 561, 588, 772, 846, 902, 1534, 2291 |
| RseI | CAYNNNNRTG | 2 cut(s) | 53, 1329 |
| SatI | GCNGC | 3 cut(s) | 809, 1596, 1995 |
| Sau3AI | GATC | 8 cut(s) | 72, 143, 158, 424, 674, 828, 1093, 2218 |
| Sau96I | GGNCC | 1 cut(s) | 1340 |
| SchI | GAGTC | 2 cut(s) | 1265, 1501 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfaNI | GCATC | 5 cut(s) | 19, 885, 1085, 1186, 2053 |
| SfcI | CTRYAG | 2 cut(s) | 1968, 1992 |
| SfuI | TTCGAA | 1 cut(s) | 1883 |
| SinI | GGWCC | 1 cut(s) | 1340 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 53, 1329 |
| SmlI | CTYRAG | 4 cut(s) | 401, 1313, 1577, 2010 |
| SmoI | CTYRAG | 4 cut(s) | 401, 1313, 1577, 2010 |
| SsiI | CCGC | 1 cut(s) | 1607 |
| SspI | AATATT | 1 cut(s) | 286 |
| SspMI | CTAG | 5 cut(s) | 125, 201, 1227, 1874, 2036 |
| StyI | CCWWGG | 2 cut(s) | 33, 1753 |
| TaaI | ACNGT | 4 cut(s) | 712, 816, 1453, 1856 |
| TaiI | ACGT | 1 cut(s) | 1623 |
| TaqI | TCGA | 8 cut(s) | 393, 410, 831, 1267, 1551, 1693, 1816, 1883 |
| TatI | WGTACW | 5 cut(s) | 135, 560, 771, 1533, 2290 |
| TfiI | GAWTC | 4 cut(s) | 380, 512, 1880, 2113 |
| TscAI | CASTG | 5 cut(s) | 768, 1456, 1570, 1831, 1861 |
| TseFI | GTSAC | 2 cut(s) | 1850, 2081 |
| TseI | GCWGC | 3 cut(s) | 808, 1595, 1994 |
| Tsp45I | GTSAC | 2 cut(s) | 1850, 2081 |
| TspDTI | ATGAA | 9 cut(s) | 221, 281, 431, 836, 1254, 1378, 1717, 1920, 2152 |
| TspRI | CASTG | 5 cut(s) | 768, 1456, 1570, 1831, 1861 |
| Vha464I | CTTAAG | 1 cut(s) | 401 |
| VpaK11BI | GGWCC | 1 cut(s) | 1340 |
| VspI | ATTAAT | 1 cut(s) | 258 |
| XapI | RAATTY | 5 cut(s) | 438, 919, 1159, 1463, 2031 |
| XbaI | TCTAGA | 3 cut(s) | 124, 1873, 2035 |
| XspI | CTAG | 5 cut(s) | 125, 201, 1227, 1874, 2036 |
| Zsp2I | ATGCAT | 1 cut(s) | 668 |