Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 8 - 222 | 2.2e-74 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 87 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AfaI | GTAC | 5 cut(s) | 62, 224, 296, 326, 542 |
| AgeI | ACCGGT | 1 cut(s) | 103 |
| AgsI | TTSAA | 1 cut(s) | 365 |
| AhlI | ACTAGT | 1 cut(s) | 458 |
| AjnI | CCWGG | 2 cut(s) | 320, 667 |
| AluBI | AGCT | 1 cut(s) | 140 |
| AluI | AGCT | 1 cut(s) | 140 |
| Alw21I | GWGCWC | 2 cut(s) | 267, 384 |
| Alw26I | GTCTC | 3 cut(s) | 209, 332, 437 |
| Ama87I | CYCGRG | 1 cut(s) | 315 |
| AoxI | GGCC | 1 cut(s) | 39 |
| AseI | ATTAAT | 1 cut(s) | 588 |
| AsiGI | ACCGGT | 1 cut(s) | 103 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AvaI | CYCGRG | 1 cut(s) | 315 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BbsI | GAAGAC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 2 cut(s) | 267, 384 |
| BbvCI | CCTCAGC | 1 cut(s) | 281 |
| BccI | CCATC | 2 cut(s) | 108, 401 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BciT130I | CCWGG | 2 cut(s) | 322, 669 |
| BciVI | GTATCC | 1 cut(s) | 112 |
| BcoDI | GTCTC | 3 cut(s) | 209, 332, 437 |
| BcuI | ACTAGT | 1 cut(s) | 458 |
| BfaI | CTAG | 2 cut(s) | 137, 459 |
| BfuI | GTATCC | 1 cut(s) | 112 |
| BmcAI | AGTACT | 1 cut(s) | 542 |
| Bme1390I | CCNGG | 2 cut(s) | 322, 669 |
| BmeT110I | CYCGRG | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmiI | GGNNCC | 1 cut(s) | 312 |
| BmrFI | CCNGG | 2 cut(s) | 322, 669 |
| BmsI | GCATC | 1 cut(s) | 155 |
| BpiI | GAAGAC | 1 cut(s) | 404 |
| Bpu10I | CCTNAGC | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BsaAI | YACGTR | 1 cut(s) | 247 |
| BsaI | GGTCTC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 2 cut(s) | 238, 668 |
| BsaWI | WCCGGW | 1 cut(s) | 103 |
| Bse118I | RCCGGY | 1 cut(s) | 103 |
| BseBI | CCWGG | 2 cut(s) | 322, 669 |
| BseDI | CCNNGG | 2 cut(s) | 238, 668 |
| BseGI | GGATG | 2 cut(s) | 28, 146 |
| BseMII | CTCAG | 2 cut(s) | 272, 660 |
| BseRI | GAGGAG | 1 cut(s) | 303 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BshTI | ACCGGT | 1 cut(s) | 103 |
| BsiHKAI | GWGCWC | 2 cut(s) | 267, 384 |
| BsiHKCI | CYCGRG | 1 cut(s) | 315 |
| BsiSI | CCGG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 3 cut(s) | 209, 332, 437 |
| BsnI | GGCC | 1 cut(s) | 41 |
| Bso31I | GGTCTC | 1 cut(s) | 332 |
| BsoBI | CYCGRG | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 3 cut(s) | 267, 303, 384 |
| Bsp1407I | TGTACA | 1 cut(s) | 222 |
| Bsp143I | GATC | 3 cut(s) | 123, 450, 523 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 2 cut(s) | 273, 659 |
| BspLI | GGNNCC | 1 cut(s) | 312 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspTNI | GGTCTC | 1 cut(s) | 332 |
| BsrFI | RCCGGY | 1 cut(s) | 103 |
| BsrGI | TGTACA | 1 cut(s) | 222 |
| BssAI | RCCGGY | 1 cut(s) | 103 |
| BssECI | CCNNGG | 2 cut(s) | 238, 668 |
| BssMI | GATC | 3 cut(s) | 123, 450, 523 |
| BssT1I | CCWWGG | 1 cut(s) | 238 |
| Bst2UI | CCWGG | 2 cut(s) | 322, 669 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstAUI | TGTACA | 1 cut(s) | 222 |
| BstBAI | YACGTR | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 1 cut(s) | 309 |
| BstDEI | CTNAG | 2 cut(s) | 281, 646 |
| BstF5I | GGATG | 2 cut(s) | 28, 146 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstKTI | GATC | 3 cut(s) | 126, 453, 526 |
| BstMAI | GTCTC | 3 cut(s) | 209, 332, 437 |
| BstMBI | GATC | 3 cut(s) | 123, 450, 523 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 317 |
| BstNI | CCWGG | 2 cut(s) | 322, 669 |
| BstSCI | CCNGG | 2 cut(s) | 320, 667 |
| BstV2I | GAAGAC | 1 cut(s) | 404 |
| BsuI | GTATCC | 1 cut(s) | 112 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BtsCI | GGATG | 2 cut(s) | 28, 146 |
| BtsIMutI | CAGTG | 2 cut(s) | 225, 654 |
| Cac8I | GCNNGC | 1 cut(s) | 309 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr10I | RCCGGY | 1 cut(s) | 103 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| Csp6I | GTAC | 5 cut(s) | 61, 223, 295, 325, 541 |
| CspAI | ACCGGT | 1 cut(s) | 103 |
| CviAII | CATG | 3 cut(s) | 74, 200, 517 |
| CviJI | RGCY | 7 cut(s) | 41, 110, 140, 280, 301, 311, 320 |
| CviKI_1 | RGCY | 7 cut(s) | 41, 110, 140, 280, 301, 311, 320 |
| CviQI | GTAC | 5 cut(s) | 61, 223, 295, 325, 541 |
| DdeI | CTNAG | 2 cut(s) | 281, 646 |
| DpnI | GATC | 3 cut(s) | 125, 452, 525 |
| DpnII | GATC | 3 cut(s) | 123, 450, 523 |
| DraI | TTTAAA | 1 cut(s) | 154 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 1 cut(s) | 238 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| Eco31I | GGTCTC | 1 cut(s) | 332 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| Eco88I | CYCGRG | 1 cut(s) | 315 |
| EcoRII | CCWGG | 2 cut(s) | 320, 667 |
| EcoT14I | CCWWGG | 1 cut(s) | 238 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 238 |
| FaeI | CATG | 3 cut(s) | 77, 203, 520 |
| FatI | CATG | 3 cut(s) | 73, 199, 516 |
| FokI | GGATG | 2 cut(s) | 35, 133 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| FspBI | CTAG | 2 cut(s) | 137, 459 |
| GlaI | GCGC | 1 cut(s) | 190 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HapII | CCGG | 1 cut(s) | 104 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin1II | CATG | 3 cut(s) | 77, 203, 520 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HinfI | GANTC | 1 cut(s) | 579 |
| HpaII | CCGG | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 223 |
| Hpy188I | TCNGA | 1 cut(s) | 128 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 223 |
| HpyAV | CCTTC | 1 cut(s) | 350 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4IV | ACGT | 1 cut(s) | 246 |
| HpyCH4V | TGCA | 4 cut(s) | 101, 146, 199, 605 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 317 |
| HpyF3I | CTNAG | 2 cut(s) | 281, 646 |
| HpySE526I | ACGT | 1 cut(s) | 246 |
| Hsp92II | CATG | 3 cut(s) | 77, 203, 520 |
| HspAI | GCGC | 1 cut(s) | 189 |
| Kzo9I | GATC | 3 cut(s) | 123, 450, 523 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 316 |
| LpnPI | CCDG | 8 cut(s) | 117, 124, 293, 307, 334, 560, 654, 681 |
| LweI | GCATC | 1 cut(s) | 155 |
| MaeI | CTAG | 2 cut(s) | 137, 459 |
| MaeII | ACGT | 1 cut(s) | 246 |
| MaeIII | GTNAC | 4 cut(s) | 242, 413, 461, 641 |
| MalI | GATC | 3 cut(s) | 125, 452, 525 |
| MboI | GATC | 3 cut(s) | 123, 450, 523 |
| MboII | GAAGA | 4 cut(s) | 272, 409, 416, 664 |
| MhlI | GDGCHC | 3 cut(s) | 267, 303, 384 |
| MluCI | AATT | 2 cut(s) | 206, 333 |
| MnlI | CCTC | 5 cut(s) | 276, 324, 404, 463, 604 |
| MseI | TTAA | 6 cut(s) | 9, 153, 209, 351, 489, 588 |
| MspI | CCGG | 1 cut(s) | 104 |
| MspR9I | CCNGG | 2 cut(s) | 322, 669 |
| MvaI | CCWGG | 2 cut(s) | 322, 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 317 |
| NdeII | GATC | 3 cut(s) | 123, 450, 523 |
| NlaIII | CATG | 3 cut(s) | 77, 203, 520 |
| NlaIV | GGNNCC | 1 cut(s) | 312 |
| NmeAIII | GCCGAG | 1 cut(s) | 507 |
| PaeR7I | CTCGAG | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 1 cut(s) | 579 |
| PinAI | ACCGGT | 1 cut(s) | 103 |
| Ppu21I | YACGTR | 1 cut(s) | 247 |
| PshBI | ATTAAT | 1 cut(s) | 588 |
| PsiI | TTATAA | 1 cut(s) | 87 |
| Psp6I | CCWGG | 2 cut(s) | 320, 667 |
| PspGI | CCWGG | 2 cut(s) | 320, 667 |
| PspN4I | GGNNCC | 1 cut(s) | 312 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| PspXI | VCTCGAGB | 1 cut(s) | 315 |
| RsaI | GTAC | 5 cut(s) | 62, 224, 296, 326, 542 |
| RsaNI | GTAC | 5 cut(s) | 61, 223, 295, 325, 541 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 6 cut(s) | 9, 153, 209, 351, 489, 588 |
| Sau3AI | GATC | 3 cut(s) | 123, 450, 523 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| ScaI | AGTACT | 1 cut(s) | 542 |
| ScrFI | CCNGG | 2 cut(s) | 322, 669 |
| SduI | GDGCHC | 3 cut(s) | 267, 303, 384 |
| SetI | ASST | 9 cut(s) | 142, 160, 244, 249, 273, 344, 415, 615, 680 |
| SfaNI | GCATC | 1 cut(s) | 155 |
| Sfr274I | CTCGAG | 1 cut(s) | 315 |
| SlaI | CTCGAG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 2 cut(s) | 302, 315 |
| SmoI | CTYRAG | 2 cut(s) | 302, 315 |
| SpeI | ACTAGT | 1 cut(s) | 458 |
| Sse9I | AATT | 2 cut(s) | 206, 333 |
| SspMI | CTAG | 2 cut(s) | 137, 459 |
| StyD4I | CCNGG | 2 cut(s) | 320, 667 |
| StyI | CCWWGG | 1 cut(s) | 238 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TaiI | ACGT | 1 cut(s) | 249 |
| TaqI | TCGA | 1 cut(s) | 316 |
| TasI | AATT | 2 cut(s) | 206, 333 |
| TatI | WGTACW | 2 cut(s) | 222, 540 |
| TfiI | GAWTC | 1 cut(s) | 579 |
| Tru1I | TTAA | 6 cut(s) | 9, 153, 209, 351, 489, 588 |
| Tru9I | TTAA | 6 cut(s) | 9, 153, 209, 351, 489, 588 |
| TscAI | CASTG | 2 cut(s) | 225, 654 |
| TspDTI | ATGAA | 5 cut(s) | 17, 105, 337, 518, 551 |
| TspRI | CASTG | 2 cut(s) | 225, 654 |
| VspI | ATTAAT | 1 cut(s) | 588 |
| XhoI | CTCGAG | 1 cut(s) | 315 |
| XspI | CTAG | 2 cut(s) | 137, 459 |
| ZrmI | AGTACT | 1 cut(s) | 542 |