Rw6G036560

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000154
Physical Location & Seq
Forward (+)
61036141 .. 61037939
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036560.1

Sequence Viewer

Length: 879 bp
ATGAGGGAGTTCGAGATGTCTGATTTGGGAAAGATGAAATACTTTCTCGGGATCGAGGTGTTGCAGTCGAGTGATGGGATTTTTATTGGCCAAAAGAAGTATGCAATGGATGTGTTAAAAAGGTTTGGGATGGAAGGGAGTAATGCAGTGTTAAATCCTATTGTTCCAGGGTTTAAGATTTCAAGGGATGAAAATGGAGTTGAAGTTGATGCCACCTTTTACAAGCAGGTTGTGGGGAGTTTAATGTACTTAACAGCTACTCGTCCTGATTTGATGTATGCAGTAAGCTTAATTAGCAGGTATATGTCACAACCTACAGAGCTTCATCTCATGGCAGCTAAGAGAATATTGAGGTATGTGAAGGGGACGGTAAATTTTGGGATTCTTTATAAGAAGGAAGGGAACAAAGATTTAGCTGCATACACGGATAGTGACTATGCAGGTTGCTTGGAGGATAGGAGAAGTACGTCTGGATATGCATTTATGTTGAGTTCAGGAGCAGTAGCCTGGTCTTCAAGGAAGCAGCCGATTGTCACTCTTTCGACAACAGAGGCTGAGTTTGTTGCTGCTGCAGCATGTGCATGCCAAGCTGTGTGGATGAAGAGAATTTTGAAAAAGCTCAGTTATGAAGGAGGTGAGTGTATTACCATATTCTGTGATAATAGTTCAACAATTAAATTATCCAGAAATCCGGTGATGCATGGCAGAAGTAAGCACATTGATCTTTTCCAAAATCTCCTTCGCGGATTTCGCTGCCATGACTTTCTGCTTGACCTTTTTGGACATATAGAACCGAAGTATCGAACAAGCTTTCTGATCAAGCACCTTCCACTCGGCTTGCTTCATGTAACTGGGTTTCCCATCCAGAGCTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

292

Amino Acids

32.87

Weight (kDa)

9.1

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 55 7.9e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000154)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02351 FvH4_1g18383 FvH4_1g18442 FvH4_1g19622 FvH4_2g08148 FvH4_2g16312 FvH4_3g06912 FvH4_3g10761 FvH4_3g12332 FvH4_3g12332 FvH4_3g14182 FvH4_3g21021 FvH4_3g35231 FvH4_3g45132 FvH4_4g08663 FvH4_4g30271 FvH4_4g30272 FvH4_4g30901 FvH4_4g30902 FvH4_5g12471 FvH4_5g22951 FvH4_6g07331 FvH4_6g07332 FvH4_6g41872 FvH4_6g43841 FvH4_6g43842 FvH4_6g48811 FvH4_7g03911 FvH4_7g13272 FvH4_7g21181 FvH4_7g29024 FvH4_7g33702
malus_domestica MD00G1037700.v1.1 MD01G1037300.v1.1 MD01G1096700.v1.1 MD01G1101100.v1.1 MD01G1129400.v1.1 MD02G1295200.v1.1 MD03G1131300.v1.1 MD04G1072100.v1.1 MD05G1104800.v1.1 MD07G1028600.v1.1 MD07G1274600.v1.1 MD08G1027200.v1.1 MD09G1044400.v1.1 MD09G1044700.v1.1 MD09G1129500.v1.1 MD09G1238700.v1.1 MD10G1011700.v1.1 MD10G1071400.v1.1 MD10G1108600.v1.1 MD10G1162100.v1.1 MD10G1162300.v1.1 MD11G1016700.v1.1 MD11G1074500.v1.1 MD15G1058600.v1.1 MD15G1383000.v1.1 MD16G1192200.v1.1 MD17G1077400.v1.1 MD17G1077500.v1.1
pyrus_communis pycom01g03520 pycom02g00350 pycom03g09910 pycom03g13960 pycom03g13970 pycom03g19180 pycom04g08410 pycom04g10140 pycom06g03750 pycom07g09240 pycom07g09260 pycom08g20130 pycom09g11020 pycom10g12690 pycom14g04140 pycom14g05710 pycom16g06380 pycom17g05500 pycom808g00140
rosa_chinensis RchiOBHm_Chr1g0316211 RchiOBHm_Chr1g0319901 RchiOBHm_Chr1g0321811 RchiOBHm_Chr1g0329831 RchiOBHm_Chr1g0330721 RchiOBHm_Chr1g0330731 RchiOBHm_Chr1g0368461 RchiOBHm_Chr1g0381111 RchiOBHm_Chr2g0154461 RchiOBHm_Chr2g0164521 RchiOBHm_Chr2g0175301 RchiOBHm_Chr3g0451301 RchiOBHm_Chr3g0453691 RchiOBHm_Chr3g0470191 RchiOBHm_Chr3g0486561 RchiOBHm_Chr4g0409141 RchiOBHm_Chr4g0409151 RchiOBHm_Chr4g0421231 RchiOBHm_Chr4g0440701 RchiOBHm_Chr5g0018211 RchiOBHm_Chr5g0023611 RchiOBHm_Chr5g0045971 RchiOBHm_Chr5g0056061 RchiOBHm_Chr5g0063381 RchiOBHm_Chr5g0064011 RchiOBHm_Chr5g0064021 RchiOBHm_Chr5g0064041 RchiOBHm_Chr6g0259681 RchiOBHm_Chr6g0259691 RchiOBHm_Chr6g0296531 RchiOBHm_Chr7g0186421 RchiOBHm_Chr7g0192321 RchiOBHm_Chr7g0198271 RchiOBHm_Chr7g0198951 RchiOBHm_Chr7g0237911
rosa_laevigata RLG00000026946
rosa_roxburghii Rroxscaffold_1G00014460 Rroxscaffold_1G00014610 Rroxscaffold_1G00028950 Rroxscaffold_1G00052630 Rroxscaffold_2G00104760 Rroxscaffold_2G00138900 Rroxscaffold_2G00145210 Rroxscaffold_3G00220110 Rroxscaffold_4G00297860 Rroxscaffold_4G00321570 Rroxscaffold_5G00332990 Rroxscaffold_5G00360870
rosa_samantha Rh1AG319600 Rh1CG299100 Rh4DG385900 Rh5BG032200
rosa_wichuraiana Rw0G002380 Rw0G003050 Rw0G003940 Rw1G002730 Rw1G003260 Rw1G005490 Rw1G016140 Rw1G016150 Rw1G017930 Rw1G017940 Rw1G022540 Rw1G022630 Rw1G031080 Rw1G039680 Rw2G003340 Rw2G003720 Rw2G006640 Rw2G020790 Rw2G025650 Rw2G028430 Rw2G029550 Rw2G034920 Rw2G040820 Rw2G048420 Rw2G048570 Rw3G010040 Rw3G022790 Rw3G023350 Rw3G025140 Rw3G028810 Rw4G000680 Rw4G003350 Rw4G004640 Rw4G026650 Rw4G034500 Rw5G008490 Rw5G020650 Rw5G023000 Rw5G033610 Rw5G037280 Rw5G046620 Rw5G050250 Rw6G001410 Rw6G005690 Rw6G005820 Rw6G010920 Rw6G022790 Rw6G023940 Rw6G026290 Rw6G028610 Rw6G031260 Rw6G036550 Rw6G036560 Rw7G015300 Rw7G017250 Rw7G018150 Rw7G031960 Rw7G036490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc36I ACCTGC 3 cut(s) 217, 288, 431
AccII CGCG 1 cut(s) 744
AciI CCGC 1 cut(s) 744
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 373, 606
AfaI GTAC 2 cut(s) 248, 466
AgsI TTSAA 6 cut(s) 183, 203, 516, 613, 669, 874
AjnI CCWGG 2 cut(s) 166, 506
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AluBI AGCT 9 cut(s) 257, 288, 322, 338, 416, 590, 619, 810, 870
AluI AGCT 9 cut(s) 257, 288, 322, 338, 416, 590, 619, 810, 870
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 554
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 7 cut(s) 335, 416, 523, 566, 569, 572, 753
ApoI RAATTY 2 cut(s) 373, 606
AsuHPI GGTGA 2 cut(s) 647, 706
AvaI CYCGRG 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BalI TGGCCA 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 504
BbvI GCAGC 7 cut(s) 347, 403, 535, 553, 556, 584, 740
BccI CCATC 3 cut(s) 68, 124, 869
BciT130I CCWGG 2 cut(s) 168, 508
BclI TGATCA 1 cut(s) 816
BfmI CTRYAG 2 cut(s) 315, 570
BfuAI ACCTGC 3 cut(s) 217, 288, 431
BisI GCNGC 7 cut(s) 336, 417, 524, 567, 570, 573, 754
BlsI GCNGC 7 cut(s) 337, 418, 525, 568, 571, 574, 755
Bme1390I CCNGG 2 cut(s) 168, 508
BmeT110I CYCGRG 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 168, 508
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 2 cut(s) 199, 687
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 691
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse1I ACTGG 1 cut(s) 856
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 168, 508
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 5 cut(s) 115, 135, 193, 603, 861
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 546, 634
BseNI ACTGG 1 cut(s) 856
BseXI GCAGC 7 cut(s) 347, 403, 535, 553, 556, 584, 740
Bsh1236I CGCG 1 cut(s) 744
BshFI GGCC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 47
Bsp143I GATC 3 cut(s) 51, 721, 816
BspACI CCGC 1 cut(s) 744
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 547, 633
BspFNI CGCG 1 cut(s) 744
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 3 cut(s) 217, 288, 431
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 3 cut(s) 51, 721, 816
Bst2UI CCWGG 2 cut(s) 168, 508
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 583, 839
BstDEI CTNAG 3 cut(s) 339, 555, 620
BstF5I GGATG 5 cut(s) 115, 135, 193, 603, 861
BstFNI CGCG 1 cut(s) 744
BstKTI GATC 3 cut(s) 54, 724, 819
BstMBI GATC 3 cut(s) 51, 721, 816
BstMWI GCNNNNNNNGC 5 cut(s) 294, 572, 578, 587, 750
BstNI CCWGG 2 cut(s) 168, 508
BstNSI RCATGY 2 cut(s) 579, 585
BstSCI CCNGG 2 cut(s) 166, 506
BstSFI CTRYAG 2 cut(s) 315, 570
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 7 cut(s) 347, 403, 535, 553, 556, 584, 740
BstV2I GAAGAC 1 cut(s) 504
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 5 cut(s) 115, 135, 193, 603, 861
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 3 cut(s) 217, 288, 431
Cac8I GCNNGC 2 cut(s) 583, 839
CaiI CAGNNNCTG 1 cut(s) 554
Csp6I GTAC 2 cut(s) 247, 465
CspCI CAANNNNNGTGG 4 cut(s) 575, 610, 819, 854
CviAII CATG 6 cut(s) 331, 576, 582, 701, 758, 845
CviQI GTAC 2 cut(s) 247, 465
DdeI CTNAG 3 cut(s) 339, 555, 620
DpnI GATC 3 cut(s) 53, 723, 818
DpnII GATC 3 cut(s) 51, 721, 816
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 166, 506
EcoT22I ATGCAT 2 cut(s) 481, 702
FaeI CATG 6 cut(s) 334, 579, 585, 704, 761, 848
FaqI GGGAC 1 cut(s) 379
FatI CATG 6 cut(s) 330, 575, 581, 700, 757, 844
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 7 cut(s) 336, 417, 524, 567, 570, 573, 754
FokI GGATG 5 cut(s) 122, 142, 200, 610, 848
Fsp4HI GCNGC 7 cut(s) 336, 417, 524, 567, 570, 573, 754
GluI GCNGC 7 cut(s) 336, 417, 524, 567, 570, 573, 754
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 692
Hin1II CATG 6 cut(s) 334, 579, 585, 704, 761, 848
HindIII AAGCTT 2 cut(s) 286, 808
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 692
HphI GGTGA 2 cut(s) 647, 706
Hpy188I TCNGA 2 cut(s) 22, 816
Hpy188III TCNNGA 7 cut(s) 13, 49, 266, 471, 495, 684, 865
HpyAV CCTTC 7 cut(s) 128, 355, 388, 392, 623, 749, 836
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 5 cut(s) 294, 572, 578, 587, 750
HpyF3I CTNAG 3 cut(s) 339, 555, 620
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 6 cut(s) 334, 579, 585, 704, 761, 848
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 3 cut(s) 51, 721, 816
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 7 cut(s) 347, 403, 535, 553, 556, 584, 740
LweI GCATC 2 cut(s) 199, 687
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 4 cut(s) 306, 431, 532, 847
MalI GATC 3 cut(s) 53, 723, 818
MboI GATC 3 cut(s) 51, 721, 816
MboII GAAGA 2 cut(s) 504, 613
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 5 cut(s) 291, 373, 606, 672, 677
MluNI TGGCCA 1 cut(s) 90
MnlI CCTC 5 cut(s) 49, 345, 445, 544, 626
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 2 cut(s) 481, 702
MscI TGGCCA 1 cut(s) 90
MseI TTAA 7 cut(s) 116, 152, 174, 242, 251, 290, 675
MslI CAYNNNNRTG 1 cut(s) 580
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 2 cut(s) 168, 508
MvaI CCWGG 2 cut(s) 168, 508
MvnI CGCG 1 cut(s) 744
MwoI GCNNNNNNNGC 5 cut(s) 294, 572, 578, 587, 750
NdeII GATC 3 cut(s) 51, 721, 816
NlaIII CATG 6 cut(s) 334, 579, 585, 704, 761, 848
NmeAIII GCCGAG 1 cut(s) 813
NmuCI GTSAC 3 cut(s) 306, 431, 532
NsiI ATGCAT 2 cut(s) 481, 702
NspI RCATGY 2 cut(s) 579, 585
PaeI GCATGC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 7 cut(s) 337, 418, 525, 568, 571, 574, 755
PsiI TTATAA 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 166, 506
PspGI CCWGG 2 cut(s) 166, 506
PstI CTGCAG 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 248, 466
RsaNI GTAC 2 cut(s) 247, 465
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 7 cut(s) 116, 152, 174, 242, 251, 290, 675
SatI GCNGC 7 cut(s) 336, 417, 524, 567, 570, 573, 754
Sau3AI GATC 3 cut(s) 51, 721, 816
ScrFI CCNGG 2 cut(s) 168, 508
SfaNI GCATC 2 cut(s) 199, 687
SfcI CTRYAG 2 cut(s) 315, 570
SmiMI CAYNNNNRTG 1 cut(s) 580
SphI GCATGC 1 cut(s) 585
Sse9I AATT 5 cut(s) 291, 373, 606, 672, 677
SsiI CCGC 1 cut(s) 744
SspI AATATT 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 166, 506
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 470
TaqI TCGA 5 cut(s) 12, 54, 68, 542, 802
TasI AATT 5 cut(s) 291, 373, 606, 672, 677
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 7 cut(s) 116, 152, 174, 242, 251, 290, 675
Tru9I TTAA 7 cut(s) 116, 152, 174, 242, 251, 290, 675
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 3 cut(s) 306, 431, 532
TseI GCWGC 7 cut(s) 335, 416, 523, 566, 569, 572, 753
Tsp45I GTSAC 3 cut(s) 306, 431, 532
TspDTI ATGAA 6 cut(s) 50, 204, 314, 614, 642, 833
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 153
XapI RAATTY 2 cut(s) 373, 606
XceI RCATGY 2 cut(s) 579, 585
Zsp2I ATGCAT 2 cut(s) 481, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.