Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Forward (+)

7595142 .. 7595867

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGATCACTTGGTTCTTCATGGTCTACTCTTTTTGCTTAACTATGGCAGCAGCAGGAACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCTCATATCACCAGTGACCCTCATAACTTGATCTTCACCAACTGGTCTACCACCACATCAGTTTGCAACTGGGTCGGCATCACTTGCGGTAAACATCAGCATCGAGTCACAGCCTTGAATATCTCTTATTTTGATCTCACGGGCACCATTCCACCGGAGCTAGGCAATCTGTCATTTCTTGTTGAGATGCGTTTCAGAAATAATAGCTTTCATGGTAGCTTGCCATCGGAGTTGGGTCGTTTGCGCAGAATCAAGTTCCTTACTTTCGCACAGGCCCGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.42

Weight (kDa)

9.02

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	24 - 63	1e-11	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	27, 149
AciI	CCGC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	4 cut(s)	104, 262, 309, 321
AluI	AGCT	4 cut(s)	104, 262, 309, 321
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	50, 53
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	376, 381
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	103, 130
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	62, 65
BccI	CCATC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	376, 381
BmiI	GGNNCC	2 cut(s)	61, 247
BmrFI	CCNGG	1 cut(s)	379
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	189, 211, 279
BmuI	ACTGGG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	4 cut(s)	79, 114, 149, 176
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseNI	ACTGG	4 cut(s)	79, 114, 149, 176
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	62, 65
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	257, 379
BslI	CCNNNNNNNGG	1 cut(s)	263
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	6, 132, 235
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	61, 247
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	245
BsrI	ACTGG	4 cut(s)	79, 114, 149, 176
BssMI	GATC	3 cut(s)	6, 132, 235
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	9, 135, 238
BstMBI	GATC	3 cut(s)	6, 132, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 186
BstSCI	CCNGG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	62, 65
BsuRI	GGCC	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	376, 381
CviAII	CATG	2 cut(s)	22, 314
CviJI	RGCY	6 cut(s)	104, 215, 262, 309, 321, 377
CviKI_1	RGCY	6 cut(s)	104, 215, 262, 309, 321, 377
DpnI	GATC	3 cut(s)	8, 134, 237
DpnII	GATC	3 cut(s)	6, 132, 235
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	381
FaeI	CATG	2 cut(s)	25, 317
FaiI	YATR	5 cut(s)	23, 47, 108, 126, 315
FatI	CATG	2 cut(s)	21, 313
FblI	GTMKAC	2 cut(s)	27, 149
Fnu4HI	GCNGC	2 cut(s)	51, 54
Fsp4HI	GCNGC	2 cut(s)	51, 54
FspBI	CTAG	1 cut(s)	263
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	51, 54
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	257, 379
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	25, 317
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	207, 351
HpaII	CCGG	2 cut(s)	257, 379
HphI	GGTGA	2 cut(s)	103, 130
Hpy166II	GTNNAC	3 cut(s)	28, 150, 194
Hpy188I	TCNGA	2 cut(s)	299, 331
Hpy8I	GTNNAC	3 cut(s)	28, 150, 194
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 186
Hsp92II	CATG	2 cut(s)	25, 317
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	6, 132, 235
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	7 cut(s)	42, 92, 127, 130, 157, 270, 359
Lsp1109I	GCAGC	2 cut(s)	62, 65
LweI	GCATC	3 cut(s)	189, 211, 279
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	116, 208
MalI	GATC	3 cut(s)	8, 134, 237
MboI	GATC	3 cut(s)	6, 132, 235
MboII	GAAGA	3 cut(s)	10, 80, 127
MhlI	GDGCHC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	41
MspI	CCGG	2 cut(s)	257, 379
MspR9I	CCNGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 186
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	6, 132, 235
NlaIII	CATG	2 cut(s)	25, 317
NlaIV	GGNNCC	2 cut(s)	61, 247
NmuCI	GTSAC	2 cut(s)	116, 208
NsbI	TGCGCA	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	52, 55
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	61, 247
PspPI	GGNCC	2 cut(s)	376, 381
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	3 cut(s)	6, 132, 235
Sau96I	GGNCC	2 cut(s)	376, 381
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	5 cut(s)	106, 264, 311, 323, 386
SfaNI	GCATC	3 cut(s)	189, 211, 279
SinI	GGWCC	1 cut(s)	381
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	377
TaqI	TCGA	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	116, 208
TseI	GCWGC	2 cut(s)	50, 53
Tsp45I	GTSAC	2 cut(s)	116, 208
TspDTI	ATGAA	2 cut(s)	10, 302
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	381
XmiI	GTMKAC	2 cut(s)	27, 149
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.