RLG00000018097

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
25306546 .. 25307046
501 bp
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UTR
Exon/CDS
Intron
RLM00000018097

Sequence Viewer

Length: 501 bp
ATGGCAGCACAAACCAACCTCAACATCATCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAATGACCCTCAAAACATAGTCTTCACCAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTAAAAAATAATAGTTTTCACGGTATCTTGCCTCAAGAATTGGCTTGCCTGCGTCGGTTGAAGTTTATAAGCTTGAGAAACAACAAGTTCATGGGAGTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCAATTTGTTTGGTAATCAATTTTCAGGTTCCAAACCAGCTACAATCTTCAACTTATCTACTCTGCAAATAATTAATCTGAGTTATAACCAACTCTCAGGTATGAAGTAA

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

9.78

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 49 1.6e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 63 - 152 6e-08 Leucine-rich repeat region
LRR_8 PF13855 108 - 162 5.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 320, 477
AccB1I GGYRCC 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 6 cut(s) 178, 313, 379, 386, 394, 442
AluBI AGCT 3 cut(s) 220, 324, 431
AluI AGCT 3 cut(s) 220, 324, 431
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 61, 88
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 165, 364
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 205, 370, 421
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 270, 346
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 37, 107, 134
BseAI TCCGGA 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 461, 501
BseNI ACTGG 3 cut(s) 37, 107, 134
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 462, 500
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 205, 370, 421
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 3 cut(s) 37, 107, 134
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 154, 298, 302
BstDEI CTNAG 2 cut(s) 470, 487
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 154, 298, 302
CseI GACGC 1 cut(s) 293
CviAII CATG 2 cut(s) 343, 360
CviJI RGCY 6 cut(s) 62, 220, 296, 324, 369, 431
CviKI_1 RGCY 6 cut(s) 62, 220, 296, 324, 369, 431
DdeI CTNAG 2 cut(s) 470, 487
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 200
FaeI CATG 2 cut(s) 346, 363
FaiI YATR 6 cut(s) 89, 320, 344, 361, 477, 494
FatI CATG 2 cut(s) 342, 359
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 346, 363
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 3 cut(s) 138, 165, 348
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 61, 88
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 3 cut(s) 215, 248, 287
Hpy8I GTNNAC 2 cut(s) 108, 152
Hpy99I CGWCG 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 152, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 2 cut(s) 470, 487
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 346, 363
Kpn2I TCCGGA 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 217, 374
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 139
MboII GAAGA 3 cut(s) 38, 85, 430
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 4 cut(s) 290, 394, 410, 462
MlyI GAGTC 2 cut(s) 147, 357
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 29, 90, 222, 294
MroI TCCGGA 1 cut(s) 214
MseI TTAA 2 cut(s) 254, 465
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NlaIII CATG 2 cut(s) 346, 363
NlaIV GGNNCC 3 cut(s) 205, 370, 421
NmuCI GTSAC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 146, 356
PpsI GAGTC 2 cut(s) 146, 356
PshBI ATTAAT 1 cut(s) 465
PsiI TTATAA 2 cut(s) 320, 477
PspN4I GGNNCC 3 cut(s) 205, 370, 421
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 254, 465
SatI GCNGC 1 cut(s) 6
SchI GAGTC 2 cut(s) 147, 357
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 21, 183, 222, 326, 421, 433, 493
SmlI CTYRAG 2 cut(s) 285, 325
SmoI CTYRAG 2 cut(s) 285, 325
Sse9I AATT 4 cut(s) 290, 394, 410, 462
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 163
TasI AATT 4 cut(s) 290, 394, 410, 462
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 254, 465
Tru9I TTAA 2 cut(s) 254, 465
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 331
VneI GTGCAC 1 cut(s) 150
VspI ATTAAT 1 cut(s) 465
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.