MD02G1291700.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000229
Physical Location & Seq
Reverse (-)
34755395 .. 34756466
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1291700.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGCGAGAACTTTTTTCCTCTCATCGACAACTTTGTTGCTGCTGCTGCTATTCCAATACTGTTCTGTATACATAGCTATATTAACAGTGAGTTCAGTAGCAGCACAAACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCCCTCAAATCCCATATAACTATTGACGCTCAAAACATCTTGACAACCAACTGGTCTACCTCCAATTCTGACATTTGCAACTGGGTTGGCGTTACTTGCAGTGTACACCACCTTAGAGTGACAGCCTTGAATCTCTCCTACATGGGTCTCACCGGCACCATTCCTCCCCACCTAGGCAACCTCTCATTTCTTGTTGCTCTTGAATTCAGAAACAACAGTTTTGGTGGTACCTTGCCCACAGAGTTGTCTCATCTACGAAGGTTGAAGTTTATTAGCTTTGGTTTCAACGAGTTTAAAGGAACCATACCATCATGGTTTGGTTCGTTATCTAAACTTCAAACACTCGATTTGTATGGTAATCAATTTTCGGGTTCCATACCAAATGCTATATTCAACTTATCTGCACTGCAAGTACTTAATCTTAGAAACAACGAGCTATCCGGTGCCATACCTAGAGAAGTCGAGAAGTTAACAATGTTGCAGGAGATATTACTTGGATATAACAATTTCGAAGGTAGCATAGCAAGAGAAATTGGAAACTTAACCATGCTCAAGAGGATATTCCTTGACTTTAACATGTTCGAAGGTACCACACACTCGACTTTGTCATTCCTCTGCATTATTAGATTAATATTAGATATACCACATTTTTATGTATATCACTTTGTAACACGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

274

Amino Acids

30.53

Weight (kDa)

7.75

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 81 4e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 143 - 193 1e-08 Leucine rich repeat
LRR_14 PF23598 149 - 258 3.4e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 368, 728
AccB1I GGYRCC 4 cut(s) 296, 368, 584, 728
AccI GTMKAC 2 cut(s) 69, 197
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 4 cut(s) 246, 370, 555, 730
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 2 cut(s) 717, 812
AgsI TTSAA 6 cut(s) 271, 344, 406, 427, 479, 535
AluBI AGCT 3 cut(s) 77, 417, 577
AluI AGCT 3 cut(s) 77, 417, 577
Alw26I GTCTC 2 cut(s) 293, 393
ApeKI GCWGC 4 cut(s) 40, 43, 46, 101
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 770
Asp718I GGTACC 2 cut(s) 368, 728
AspA2I CCTAGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 2 cut(s) 651, 723
AvrII CCTAGG 1 cut(s) 313
BanI GGYRCC 4 cut(s) 296, 368, 584, 728
BbvI GCAGC 4 cut(s) 27, 30, 33, 113
BccI CCATC 1 cut(s) 457
BcoDI GTCTC 2 cut(s) 293, 393
BfaI CTAG 2 cut(s) 314, 594
BisI GCNGC 4 cut(s) 41, 44, 47, 102
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 4 cut(s) 42, 45, 48, 103
BmcAI AGTACT 1 cut(s) 555
BmiI GGNNCC 6 cut(s) 298, 370, 442, 514, 586, 730
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
Bpu14I TTCGAA 2 cut(s) 651, 723
BpuEI CTTGAG 1 cut(s) 677
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 127, 197, 227
BseDI CCNNGG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 3 cut(s) 127, 197, 227
BseXI GCAGC 4 cut(s) 27, 30, 33, 113
BsgI GTGCAG 1 cut(s) 528
BshNI GGYRCC 4 cut(s) 296, 368, 584, 728
BsiSI CCGG 2 cut(s) 294, 582
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 293, 393
Bso31I GGTCTC 1 cut(s) 293
Bsp119I TTCGAA 2 cut(s) 651, 723
Bsp1407I TGTACA 1 cut(s) 244
BspLI GGNNCC 6 cut(s) 298, 370, 442, 514, 586, 730
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 2 cut(s) 651, 723
BspT107I GGYRCC 4 cut(s) 296, 368, 584, 728
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 3 cut(s) 127, 197, 227
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 313
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 62, 88, 359
Bst6I CTCTTC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 244
BstBI TTCGAA 2 cut(s) 651, 723
BstDEI CTNAG 2 cut(s) 254, 563
BstMAI GTCTC 2 cut(s) 293, 393
BstMWI GCNNNNNNNGC 3 cut(s) 46, 140, 237
BstNSI RCATGY 1 cut(s) 721
BstV1I GCAGC 4 cut(s) 27, 30, 33, 113
BstZ17I GTATAC 1 cut(s) 70
BtsI GCAGTG 2 cut(s) 247, 545
BtsIMutI CAGTG 3 cut(s) 93, 247, 545
Cfr10I RCCGGY 1 cut(s) 293
CseI GACGC 1 cut(s) 176
Csp6I GTAC 4 cut(s) 245, 369, 554, 729
CviAII CATG 4 cut(s) 283, 453, 688, 718
CviJI RGCY 4 cut(s) 77, 266, 417, 577
CviKI_1 RGCY 4 cut(s) 77, 266, 417, 577
CviQI GTAC 4 cut(s) 245, 369, 554, 729
DdeI CTNAG 2 cut(s) 254, 563
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 4 cut(s) 286, 456, 691, 721
FatI CATG 4 cut(s) 282, 452, 687, 717
FblI GTMKAC 2 cut(s) 69, 197
Fnu4HI GCNGC 4 cut(s) 41, 44, 47, 102
Fsp4HI GCNGC 4 cut(s) 41, 44, 47, 102
FspBI CTAG 2 cut(s) 314, 594
GluI GCNGC 4 cut(s) 41, 44, 47, 102
HapII CCGG 2 cut(s) 294, 582
HgaI GACGC 1 cut(s) 176
Hin1II CATG 4 cut(s) 286, 456, 691, 721
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 1 cut(s) 271
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 2 cut(s) 294, 582
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 5 cut(s) 70, 198, 245, 247, 612
Hpy188I TCNGA 2 cut(s) 211, 350
Hpy188III TCNNGA 4 cut(s) 181, 341, 604, 694
Hpy8I GTNNAC 5 cut(s) 70, 198, 245, 247, 612
HpyAV CCTTC 3 cut(s) 393, 647, 719
HpyCH4III ACNGT 3 cut(s) 62, 88, 359
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 6 cut(s) 219, 240, 545, 550, 622, 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 140, 237
HpyF3I CTNAG 2 cut(s) 254, 563
HpySE526I ACGT 1 cut(s) 814
Hsp92II CATG 4 cut(s) 286, 456, 691, 721
KpnI GGTACC 2 cut(s) 372, 732
KspAI GTTAAC 1 cut(s) 612
LguI GCTCTTC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 140, 178, 208, 307, 595, 608
Lsp1109I GCAGC 4 cut(s) 27, 30, 33, 113
MaeI CTAG 2 cut(s) 314, 594
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 3 cut(s) 232, 259, 808
MboII GAAGA 1 cut(s) 128
MluCI AATT 5 cut(s) 205, 344, 503, 646, 672
MnlI CCTC 7 cut(s) 29, 155, 211, 315, 332, 690, 764
MseI TTAA 7 cut(s) 83, 435, 558, 611, 683, 714, 770
MslI CAYNNNNRTG 1 cut(s) 792
MspI CCGG 2 cut(s) 294, 582
MwoI GCNNNNNNNGC 3 cut(s) 46, 140, 237
NlaIII CATG 4 cut(s) 286, 456, 691, 721
NlaIV GGNNCC 6 cut(s) 298, 370, 442, 514, 586, 730
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 721
NspV TTCGAA 2 cut(s) 651, 723
PciI ACATGT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 745
PkrI GCNGC 4 cut(s) 42, 45, 48, 103
PscI ACATGT 1 cut(s) 717
PshBI ATTAAT 1 cut(s) 770
PspN4I GGNNCC 6 cut(s) 298, 370, 442, 514, 586, 730
PsyI GACNNNGTC 1 cut(s) 745
RsaI GTAC 4 cut(s) 246, 370, 555, 730
RsaNI GTAC 4 cut(s) 245, 369, 554, 729
RseI CAYNNNNRTG 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 7 cut(s) 83, 435, 558, 611, 683, 714, 770
SatI GCNGC 4 cut(s) 41, 44, 47, 102
ScaI AGTACT 1 cut(s) 555
SfuI TTCGAA 2 cut(s) 651, 723
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 205, 344, 503, 646, 672
SspI AATATT 1 cut(s) 774
SspMI CTAG 2 cut(s) 314, 594
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 62, 88, 359
TaiI ACGT 1 cut(s) 817
TaqI TCGA 6 cut(s) 26, 486, 603, 651, 723, 740
TasI AATT 5 cut(s) 205, 344, 503, 646, 672
TatI WGTACW 2 cut(s) 244, 553
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 7 cut(s) 83, 435, 558, 611, 683, 714, 770
Tru9I TTAA 7 cut(s) 83, 435, 558, 611, 683, 714, 770
TscAI CASTG 3 cut(s) 93, 247, 552
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 4 cut(s) 40, 43, 46, 101
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 3 cut(s) 93, 247, 552
Tth111I GACNNNGTC 1 cut(s) 745
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 721
XmaJI CCTAGG 1 cut(s) 313
XmiI GTMKAC 2 cut(s) 69, 197
XspI CTAG 2 cut(s) 314, 594
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.