Rh5CG093500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
7427509 .. 7428732
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG093500.1

Sequence Viewer

Length: 720 bp
ATGACTCGTCTGTGCCGGTTGAAATTCATCAACTTTGGAAACAACTCATTTATGGGAGCCATTCTGTCGTGGTTCGGGTCTTTATCCAAACTTCAAAACTTCACTTTGAGAGGTAATCACTTTTCAGGTTCCATACCAACGGCCATTTTCAACTTATCTACACTGCGACGAATTGATTTCAGGCGTAACCAACTATCAGGTAGTATACCGAGAGAAATTGGAAACTTAACAACATTGAAGGAGATCTACCTTGATGATAATAATTTCATAGAAATTCCAAATGAGATCGGCGCTTTAGATCAACTGGAGAAGTTGTATGTGCAAGACAATGTCCTAGAAGGAAATGCTCCTATGGTTGTCTTCAACATGTCTTCTTTGTTTACTTTGACTCTATTTGGAAACAACTTGAAGGGTAGACTTCCAGACAATATGTGCCAGAATCTTCCTCATATTCAAATTTTGAATTTCGGTGATAACCAGCTTAAAGTTGGAAGCATACCCAAAGATATTGGGAACGCAACCCAATTACAACATGTTTATCTTGCTGGAAACAATTTGACAGGTTCCATACCAGCGACCATCTTCAGCTTATCTGCACTACAAGTAATTTCTTTGAGATCTAACCGACTATCAGGTAGTATACCGAGAGAAATTGGAAATTTAACAACGTTGAAAGAGATGTATCTTTTTGATAATAATTTCACAGGTAGGCCCCCCTAA

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

9.23

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 30 - 89 2.3e-07 Leucine rich repeat
LRR_14 PF23598 49 - 134 6e-09 Leucine-rich repeat region
LRR_8 PF13855 78 - 136 1e-05 Leucine rich repeat
LRR_14 PF23598 146 - 230 3.1e-07 Leucine-rich repeat region
LRR_8 PF13855 175 - 234 9e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 205, 415, 640
AclI AACGTT 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 5 cut(s) 23, 273, 456, 463, 658
AcuI CTGAAG 1 cut(s) 568
AflIII ACRYGT 2 cut(s) 366, 532
AgsI TTSAA 9 cut(s) 22, 95, 151, 238, 364, 409, 455, 463, 673
AluBI AGCT 2 cut(s) 481, 588
AluI AGCT 2 cut(s) 481, 588
AoxI GGCC 2 cut(s) 141, 710
ApoI RAATTY 5 cut(s) 23, 273, 456, 463, 658
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 711
AsuHPI GGTGA 1 cut(s) 482
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 2 cut(s) 352, 363
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 156
BfaI CTAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 2 cut(s) 243, 617
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 4 cut(s) 58, 130, 565, 713
BpiI GAAGAC 2 cut(s) 352, 363
BpmI CTGGAG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 2 cut(s) 143, 712
BsiSI CCGG 1 cut(s) 16
BsnI GGCC 2 cut(s) 143, 712
Bsp143I GATC 4 cut(s) 243, 285, 298, 617
BspANI GGCC 2 cut(s) 143, 712
BspLI GGNNCC 4 cut(s) 58, 130, 565, 713
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 15
BssMI GATC 4 cut(s) 243, 285, 298, 617
BssNAI GTATAC 2 cut(s) 206, 641
Bst1107I GTATAC 2 cut(s) 206, 641
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 4 cut(s) 246, 288, 301, 620
BstMBI GATC 4 cut(s) 243, 285, 298, 617
BstNSI RCATGY 2 cut(s) 370, 536
BstV2I GAAGAC 2 cut(s) 352, 363
BstX2I RGATCY 2 cut(s) 243, 617
BstYI RGATCY 2 cut(s) 243, 617
BstZ17I GTATAC 2 cut(s) 206, 641
BsuRI GGCC 2 cut(s) 143, 712
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 711
CviAII CATG 2 cut(s) 367, 533
CviJI RGCY 5 cut(s) 59, 143, 481, 588, 712
CviKI_1 RGCY 5 cut(s) 59, 143, 481, 588, 712
DpnI GATC 4 cut(s) 245, 287, 300, 619
DpnII GATC 4 cut(s) 243, 285, 298, 617
EaeI YGGCCR 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 711
FaeI CATG 2 cut(s) 370, 536
FatI CATG 2 cut(s) 366, 532
FblI GTMKAC 3 cut(s) 205, 415, 640
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 2 cut(s) 143, 712
HapII CCGG 1 cut(s) 16
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 370, 536
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 3 cut(s) 4, 388, 439
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 4 cut(s) 206, 381, 416, 641
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 4 cut(s) 206, 381, 416, 641
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 232, 332, 403
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 2 cut(s) 322, 596
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 2 cut(s) 370, 536
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 4 cut(s) 243, 285, 298, 617
LmnI GCTCC 2 cut(s) 56, 352
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 245, 287, 300, 619
MboI GATC 4 cut(s) 243, 285, 298, 617
MboII GAAGA 4 cut(s) 352, 363, 434, 574
MflI RGATCY 2 cut(s) 243, 617
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 2 cut(s) 104, 456
MseI TTAA 3 cut(s) 227, 483, 662
MspI CCGG 1 cut(s) 16
NdeII GATC 4 cut(s) 243, 285, 298, 617
NlaIII CATG 2 cut(s) 370, 536
NlaIV GGNNCC 4 cut(s) 58, 130, 565, 713
NspI RCATGY 2 cut(s) 370, 536
PciI ACATGT 2 cut(s) 366, 532
PfeI GAWTC 1 cut(s) 439
PflFI GACNNNGTC 1 cut(s) 329
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PscI ACATGT 2 cut(s) 366, 532
Psp1406I AACGTT 1 cut(s) 668
PspN4I GGNNCC 4 cut(s) 58, 130, 565, 713
PspPI GGNCC 1 cut(s) 711
PsuI RGATCY 2 cut(s) 243, 617
PsyI GACNNNGTC 1 cut(s) 329
SaqAI TTAA 3 cut(s) 227, 483, 662
Sau3AI GATC 4 cut(s) 243, 285, 298, 617
Sau96I GGNCC 1 cut(s) 711
SchI GAGTC 1 cut(s) 382
SspMI CTAG 1 cut(s) 335
TaiI ACGT 1 cut(s) 671
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 3 cut(s) 227, 483, 662
Tru9I TTAA 3 cut(s) 227, 483, 662
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 16, 256
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 329
XapI RAATTY 5 cut(s) 23, 273, 456, 463, 658
XceI RCATGY 2 cut(s) 370, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmiI GTMKAC 3 cut(s) 205, 415, 640
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.