Rw5G007590

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
8032308 .. 8033423
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007590.1

Sequence Viewer

Length: 822 bp
ATGGCTAGCTTAACCATAGCAGCACAAATTATCGACGGTACTCTCACCGCAGACCAATCTGCTCTTCTTGCTCTCAAAGCCCATATCACTAGCGACCCTCATAACATGATCTTGACCAACTGGTCAACCACCACCCCCATTTGCAATTGGTCTGGCGTTACTTGTGGCAACCTGTCATTTCTTGTTCATCTCGACTTGAGAAATAACAGCTTCCATGGTCATTTGCCCGAGGAATTGGCTCATCTGCGCCGGTTGAAGTTCATCGACTTGGGAAACAACAAATTTATGGGAGCCATTCCGTCGTGGTTCGGGTCTTTATCCAAACTTCAAAGCTTCACTTTGAGAGGTAATCAGTTTTCGGGTTCAATACCCTCTGCAATTTTCAACTTGTCTGCACTGCAAGTCGTTGATATGAATTATAACCAGCTAGCAGGCAGTATACCGAGAGAAATTGGAAACTCAACAATGCTCAAGAAGATACTCTTAGATTTTAATAACTTAGAAGAAATTCCAAACGAGATCGGCGCTTTAGATCAACTGGAAAAACTTTATGTGCAAGAAAATTCCCTAGAAGGACATCTTCCTATGGTTATCTTCAACATGTCTTCATTGATTACTCTGACTCTATATGGGAACAACTTGAAGGGTAGACTTCCTGACAATATATGTCAGAATCTTCCTCATATTCAGTCGTTGGCCTTCTCTCACAACCAGTTTAATGGTCCACTTCCATCCAAATTTTGGCAGTGCAAACAACTTGTATCTTTACTATTGTCCCGTAACAACTTCAGTGGAAGCATACCCAAACTATTGGGAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

273

Amino Acids

30.2

Weight (kDa)

7.12

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 17 - 55 7.9e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 56 - 137 1.4e-06 Leucine-rich repeat region
LRR_14 PF23598 131 - 209 5.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AasI GACNNNNNNGTC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 741
AccI GTMKAC 2 cut(s) 439, 649
AciI CCGC 1 cut(s) 48
AcsI RAATTY 4 cut(s) 281, 507, 562, 737
AcuI CTGAAG 1 cut(s) 772
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 741
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 256, 329, 366, 385, 598, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 4 cut(s) 9, 210, 333, 427
AluI AGCT 4 cut(s) 9, 210, 333, 427
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 4 cut(s) 281, 507, 562, 737
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 2 cut(s) 249, 527
AspS9I GGNCC 1 cut(s) 722
AsuHPI GGTGA 1 cut(s) 37
AsuNHI GCTAGC 2 cut(s) 5, 427
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 739
BfaI CTAG 4 cut(s) 6, 90, 428, 569
BfoI RGCGCY 1 cut(s) 528
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 722
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 1 cut(s) 292
BmtI GCTAGC 2 cut(s) 9, 431
BpiI GAAGAC 1 cut(s) 597
BpuEI CTTGAG 2 cut(s) 217, 455
BsaJI CCNNGG 2 cut(s) 214, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 741
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 3 cut(s) 125, 543, 712
BseDI CCNNGG 2 cut(s) 214, 228
BseGI GGATG 1 cut(s) 731
BseLI CCNNNNNNNGG 1 cut(s) 741
BseNI ACTGG 3 cut(s) 125, 543, 712
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 698
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 1 cut(s) 698
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 3 cut(s) 108, 519, 532
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 292
BspOI GCTAGC 2 cut(s) 9, 431
BspQI GCTCTTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 3 cut(s) 125, 543, 712
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 214, 228
BssMI GATC 3 cut(s) 108, 519, 532
BssNAI GTATAC 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 7, 429, 433
BstDEI CTNAG 2 cut(s) 484, 499
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 731
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 2 cut(s) 249, 527
BstKTI GATC 3 cut(s) 111, 522, 535
BstMBI GATC 3 cut(s) 108, 519, 532
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNSI RCATGY 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 597
BstXI CCANNNNNNTGG 2 cut(s) 719, 811
BstZ17I GTATAC 1 cut(s) 440
BsuRI GGCC 1 cut(s) 698
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 731
BtsI GCAGTG 2 cut(s) 395, 752
BtsIMutI CAGTG 3 cut(s) 395, 752, 796
Cac8I GCNNGC 3 cut(s) 7, 429, 433
CfoI GCGC 2 cut(s) 249, 527
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 3 cut(s) 106, 215, 601
CviJI RGCY 9 cut(s) 5, 9, 80, 210, 239, 293, 333, 427, 698
CviKI_1 RGCY 9 cut(s) 5, 9, 80, 210, 239, 293, 333, 427, 698
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 484, 499
DpnI GATC 3 cut(s) 110, 521, 534
DpnII GATC 3 cut(s) 108, 519, 532
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 772
Eco88I CYCGRG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 109, 218, 604
FalI AAGNNNNNCTT 6 cut(s) 322, 354, 467, 499, 564, 596
FaqI GGGAC 1 cut(s) 760
FatI CATG 3 cut(s) 105, 214, 600
FblI GTMKAC 2 cut(s) 439, 649
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 718
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 4 cut(s) 6, 90, 428, 569
GlaI GCGC 2 cut(s) 248, 526
GluI GCNGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 1 cut(s) 698
HapII CCGG 1 cut(s) 250
HhaI GCGC 2 cut(s) 249, 527
Hin1II CATG 3 cut(s) 109, 218, 604
Hin6I GCGC 2 cut(s) 247, 525
HinP1I GCGC 2 cut(s) 247, 525
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 622, 673
HpaII CCGG 1 cut(s) 250
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 4 cut(s) 126, 440, 650, 725
Hpy188I TCNGA 2 cut(s) 621, 672
Hpy188III TCNNGA 4 cut(s) 112, 191, 472, 656
Hpy8I GTNNAC 4 cut(s) 126, 440, 650, 725
Hpy99I CGWCG 2 cut(s) 38, 304
HpyAV CCTTC 3 cut(s) 566, 637, 709
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 6 cut(s) 144, 377, 395, 400, 556, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 2 cut(s) 484, 499
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 3 cut(s) 109, 218, 604
HspAI GCGC 2 cut(s) 247, 525
Kzo9I GATC 3 cut(s) 108, 519, 532
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 9 cut(s) 106, 138, 185, 263, 417, 437, 524, 669, 725
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 4 cut(s) 6, 90, 428, 569
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 2 cut(s) 157, 779
MalI GATC 3 cut(s) 110, 521, 534
MboI GATC 3 cut(s) 108, 519, 532
MboII GAAGA 7 cut(s) 56, 487, 515, 572, 586, 597, 668
MfeI CAATTG 1 cut(s) 145
MlyI GAGTC 1 cut(s) 616
MnlI CCTC 5 cut(s) 108, 223, 338, 382, 690
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 3 cut(s) 11, 492, 717
MspI CCGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NcoI CCATGG 1 cut(s) 214
NdeII GATC 3 cut(s) 108, 519, 532
NheI GCTAGC 2 cut(s) 5, 427
NlaIII CATG 3 cut(s) 109, 218, 604
NlaIV GGNNCC 1 cut(s) 292
NspI RCATGY 1 cut(s) 604
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 673
PflMI CCANNNNNTGG 1 cut(s) 741
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PscI ACATGT 1 cut(s) 600
PsiI TTATAA 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 722
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 11, 492, 717
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 108, 519, 532
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 1 cut(s) 616
SetI ASST 7 cut(s) 11, 174, 212, 335, 349, 429, 821
SinI GGWCC 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 196, 470
SmoI CTYRAG 2 cut(s) 196, 470
SsiI CCGC 1 cut(s) 48
SspMI CTAG 4 cut(s) 6, 90, 428, 569
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 821
TaqI TCGA 3 cut(s) 33, 192, 264
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 3 cut(s) 11, 492, 717
Tru9I TTAA 3 cut(s) 11, 492, 717
TscAI CASTG 3 cut(s) 402, 752, 796
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 176, 250, 428, 597
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 3 cut(s) 402, 752, 796
Van91I CCANNNNNTGG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 4 cut(s) 281, 507, 562, 737
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmiI GTMKAC 2 cut(s) 439, 649
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 4 cut(s) 6, 90, 428, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.