pycom10g25090

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
26760316 .. 26761221
906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g25090.1

Sequence Viewer

Length: 906 bp
ATGAGACAAAGTCAACAGCTCATGGAGGGAAGAGCTCAGTCCTCGCCATTTCGGTGTACAAATCTGTTGCTGCTGCACTGCTTTCTTCGTAGCTTCGTTGTGGTGGCAGCAGCAACCAACATCACCACAGACCAATCTGCCCTGCTTGCTCTCAAATCCCACATCACTTATGACCCTCACAGTATCCTGGCAAAAAACTGGTCTGCAACTGCTTCTGTTTGTGCATGGATTGGTGTCACATGTAATGCTCCCCACAACAGAGTCCATGCCTTGAACCTTTCTTACATGGGGCTGGAGGGCACCATCCCTCCATACCTAGGAAACCTCTCGTTCCTCGCGCAGCTCCATCTCCCAAACAACAGCTTTCACGGTTCTCTGCCCTATCAGATGGTTCGTCTGCGAAGATTGAAGTTCATCACCTTTGCATACAACCGCTTAAGCGGGGAGATCCCATCATTTTTCGGGTCACTGCCAAAACTCGGGTACTTGCATTTGGGTGGCAATGAACTTTCGGGTTCTATACCTGCAAGCCTCTTCAATGCATCCTCCTCATCACTGCAAAAGCTCGTTCTTTCTGACAACGCCCTTTCGGGTTCTATGCCCTCTACCATTTTCAACATGTCCTCATTGCAGGGCATTGATCTCCCCAACTGTAGCCTATCTGATGAACTTCCAGGGAACATTTTTAGTCAGCTTCCTAATTTGCAAGGGATTTATTTGTCACTTAACCATTTTTCAGTTGCTCCAAACTCCAATTTCTATCTCTGTCTTACAATACCTTCACCGGAAGCATACCTGCCGGCATTTCGAATCTCACCGTGCTTGCCGGGTTATATTTGGGCTACAACAGTTTCAAAGGTACGATTTTTTTTTCTTTTTTCTTTTCTCTATATGACTATATTTTAA

Protein Analysis

302

Amino Acids

33.19

Weight (kDa)

8.99

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 43 - 82 3.6e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 185 - 245 1.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 532, 804
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 338
AciI CCGC 2 cut(s) 433, 441
AclWI GGATC 1 cut(s) 442
AfaI GTAC 3 cut(s) 58, 485, 861
AfiI CCNNNNNNNGG 2 cut(s) 317, 479
AflII CTTAAG 1 cut(s) 436
AflIII ACRYGT 2 cut(s) 239, 618
AgsI TTSAA 5 cut(s) 274, 409, 538, 616, 855
AjnI CCWGG 2 cut(s) 186, 673
AluBI AGCT 7 cut(s) 19, 35, 93, 343, 363, 565, 694
AluI AGCT 7 cut(s) 19, 35, 93, 343, 363, 565, 694
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 479
ApeKI GCWGC 5 cut(s) 70, 73, 107, 110, 340
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 828
AsuHPI GGTGA 4 cut(s) 115, 409, 774, 807
AsuII TTCGAA 1 cut(s) 808
AvaI CYCGRG 1 cut(s) 479
AvrII CCTAGG 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 5 cut(s) 57, 60, 119, 122, 352
BccI CCATC 4 cut(s) 311, 354, 382, 460
BciT130I CCWGG 2 cut(s) 188, 675
BciVI GTATCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 828
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 436
BfuAI ACCTGC 2 cut(s) 532, 804
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 5 cut(s) 71, 74, 108, 111, 341
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 5 cut(s) 72, 75, 109, 112, 342
Bme1390I CCNGG 3 cut(s) 188, 675, 828
BmeT110I CYCGRG 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 3 cut(s) 188, 675, 828
BmsI GCATC 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 808
BpuMI CCSGG 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 316, 674
BsaWI WCCGGW 1 cut(s) 784
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 479
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 508, 626
BseBI CCWGG 2 cut(s) 188, 675
BseDI CCNNGG 2 cut(s) 316, 674
BseGI GGATG 2 cut(s) 303, 542
BseLI CCNNNNNNNGG 2 cut(s) 317, 479
BseMI GCAATG 2 cut(s) 508, 626
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 5 cut(s) 57, 60, 119, 122, 352
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 3 cut(s) 785, 800, 827
BslI CCNNNNNNNGG 2 cut(s) 317, 479
BsoBI CYCGRG 1 cut(s) 479
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 37, 302
Bsp1407I TGTACA 1 cut(s) 56
Bsp143I GATC 2 cut(s) 447, 640
BspACI CCGC 2 cut(s) 433, 441
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 301
BspMI ACCTGC 2 cut(s) 532, 804
BspPI GGATC 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 808
BspT107I GGYRCC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 508, 626
BsrFI RCCGGY 1 cut(s) 799
BsrGI TGTACA 1 cut(s) 56
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 2 cut(s) 316, 674
BssMI GATC 2 cut(s) 447, 640
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 2 cut(s) 188, 675
Bst4CI ACNGT 5 cut(s) 182, 371, 653, 819, 850
Bst6I CTCTTC 2 cut(s) 25, 539
BstAFI CTTAAG 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 4 cut(s) 147, 529, 801, 824
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 303, 542
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 450, 643
BstMBI GATC 2 cut(s) 447, 640
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 2 cut(s) 188, 675
BstNSI RCATGY 2 cut(s) 243, 622
BstSCI CCNGG 3 cut(s) 186, 673, 826
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 5 cut(s) 57, 60, 119, 122, 352
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuI GTATCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 303, 542
BtsI GCAGTG 3 cut(s) 76, 467, 554
BtsIMutI CAGTG 3 cut(s) 76, 467, 554
BveI ACCTGC 2 cut(s) 532, 804
Cac8I GCNNGC 4 cut(s) 147, 529, 801, 824
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 799
Csp6I GTAC 3 cut(s) 57, 484, 860
CviAII CATG 6 cut(s) 22, 225, 240, 266, 286, 619
CviQI GTAC 3 cut(s) 57, 484, 860
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 449, 642
DpnII GATC 2 cut(s) 447, 640
Eam1104I CTCTTC 2 cut(s) 25, 539
EarI CTCTTC 2 cut(s) 25, 539
Ecl136II GAGCTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 186, 673
EcoT14I CCWWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 6 cut(s) 25, 228, 243, 269, 289, 622
FatI CATG 6 cut(s) 21, 224, 239, 265, 285, 618
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 5 cut(s) 71, 74, 108, 111, 341
FokI GGATG 2 cut(s) 290, 529
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 5 cut(s) 71, 74, 108, 111, 341
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 339
GluI GCNGC 5 cut(s) 71, 74, 108, 111, 341
GsuI CTGGAG 1 cut(s) 314
HapII CCGG 3 cut(s) 785, 800, 827
HhaI GCGC 1 cut(s) 340
Hin1II CATG 6 cut(s) 25, 228, 243, 269, 289, 622
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 2 cut(s) 261, 810
HpaII CCGG 3 cut(s) 785, 800, 827
HphI GGTGA 4 cut(s) 115, 409, 774, 807
Hpy166II GTNNAC 2 cut(s) 14, 57
Hpy188I TCNGA 3 cut(s) 387, 577, 664
Hpy8I GTNNAC 2 cut(s) 14, 57
HpyAV CCTTC 1 cut(s) 789
HpyCH4III ACNGT 5 cut(s) 182, 371, 653, 819, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 6 cut(s) 25, 228, 243, 269, 289, 622
HspAI GCGC 1 cut(s) 338
KroI GCCGGC 1 cut(s) 799
KroNI GCCGGC 1 cut(s) 801
Kzo9I GATC 2 cut(s) 447, 640
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 253, 348, 748
Lsp1109I GCAGC 5 cut(s) 57, 60, 119, 122, 352
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 235, 465, 720
MalI GATC 2 cut(s) 449, 642
MboI GATC 2 cut(s) 447, 640
MboII GAAGA 4 cut(s) 42, 77, 414, 526
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 37, 302
MluCI AATT 2 cut(s) 700, 754
MlyI GAGTC 1 cut(s) 270
Mph1103I ATGCAT 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 799
MseI TTAA 3 cut(s) 437, 726, 904
MslI CAYNNNNRTG 2 cut(s) 52, 495
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 3 cut(s) 785, 800, 827
MspR9I CCNGG 3 cut(s) 188, 675, 828
MvaI CCWGG 2 cut(s) 188, 675
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 146
NaeI GCCGGC 1 cut(s) 801
NciI CCSGG 1 cut(s) 828
NdeII GATC 2 cut(s) 447, 640
NgoMIV GCCGGC 1 cut(s) 799
NlaIII CATG 6 cut(s) 25, 228, 243, 269, 289, 622
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 3 cut(s) 235, 465, 720
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 2 cut(s) 243, 622
NspV TTCGAA 1 cut(s) 808
PciI ACATGT 2 cut(s) 239, 618
PciSI GCTCTTC 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 801
PfeI GAWTC 1 cut(s) 810
PflFI GACNNNGTC 1 cut(s) 9
PkrI GCNGC 5 cut(s) 72, 75, 109, 112, 342
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 2 cut(s) 239, 618
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 186, 673
PspGI CCWGG 2 cut(s) 186, 673
PspN4I GGNNCC 1 cut(s) 301
PsrI GAACNNNNNNTAC 2 cut(s) 266, 298
PsuI RGATCY 1 cut(s) 447
PsyI GACNNNGTC 1 cut(s) 9
RsaI GTAC 3 cut(s) 58, 485, 861
RsaNI GTAC 3 cut(s) 57, 484, 860
RseI CAYNNNNRTG 2 cut(s) 52, 495
SacI GAGCTC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 437, 726, 904
SatI GCNGC 5 cut(s) 71, 74, 108, 111, 341
Sau3AI GATC 2 cut(s) 447, 640
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 188, 675, 828
SduI GDGCHC 2 cut(s) 37, 302
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 52, 495
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 2 cut(s) 700, 754
SsiI CCGC 2 cut(s) 433, 441
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 186, 673, 826
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 5 cut(s) 182, 371, 653, 819, 850
TaqI TCGA 1 cut(s) 808
TasI AATT 2 cut(s) 700, 754
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 810
Tru1I TTAA 3 cut(s) 437, 726, 904
Tru9I TTAA 3 cut(s) 437, 726, 904
TscAI CASTG 3 cut(s) 83, 474, 561
TseFI GTSAC 3 cut(s) 235, 465, 720
TseI GCWGC 5 cut(s) 70, 73, 107, 110, 340
Tsp45I GTSAC 3 cut(s) 235, 465, 720
TspDTI ATGAA 3 cut(s) 403, 519, 681
TspRI CASTG 3 cut(s) 83, 474, 561
Tth111I GACNNNGTC 1 cut(s) 9
Vha464I CTTAAG 1 cut(s) 436
XceI RCATGY 2 cut(s) 243, 622
XmaJI CCTAGG 1 cut(s) 316
XspI CTAG 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.