Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Forward (+)

23961031 .. 23964741

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAGCTCAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTAAAAGCCCGTATCACCAATGACCCTCGAAACATAGTCTTTACCAACTGGTCAACCATAACCCCTGTTTGTAACTGGGTTAGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCCGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTCGACTTCAAAAATAATAGTTTTCACGGTATCTTGCCTCAAGAATTGGCTTGCCTGCGTCGGTTGAAGTTTATAAGATTGAGAAACAACAAGTTCATGGGAGTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCGATTTGTTTGGTAATCAATTTTCATGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTACAAATAATTGATCTGAGTTATAACCAACTCTCAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGGTACTGGTGCTCGGTCGAAATAATCTAAATGGCGATATCCCATCCTCAATCTTCAATATCTCCACAATAAGACTATTAAATCTTGTCCTCAATCAGCTTTCAGGCAGCCTCCCAGCAGACATAGGCCTTGCGCTTCCAAAACTAGCAGAGTTTTATGCAGGAACGAATCACCTCAGAGGAGTAATCCCCAAATCCATCTCCAATGCTTCTCAGCTCTGGTATCTAGACCTGGACGGTAACTCTTTTTCTGGATTTATTCCAACAACTCTGTGCCTCTTGACAAACCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

274

Amino Acids

30.38

Weight (kDa)

8.87

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 49	1e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	63 - 158	6.1e-08	Leucine-rich repeat region
LRR_8	PF13855	108 - 162	2.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	320, 477
AccB1I	GGYRCC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	36, 221
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	8 cut(s)	178, 256, 313, 379, 386, 442, 586, 821
AjnI	CCWGG	1 cut(s)	759
AluBI	AGCT	5 cut(s)	8, 220, 431, 628, 745
AluI	AGCT	5 cut(s)	8, 220, 431, 628, 745
Alw21I	GWGCWC	2 cut(s)	154, 543
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	655
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	5, 636
ApoI	RAATTY	1 cut(s)	523
AsiGI	ACCGGT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	19, 61, 692
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	154, 543
BbvI	GCAGC	2 cut(s)	17, 648
BccI	CCATC	4 cut(s)	165, 364, 580, 734
BciT130I	CCWGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	221, 674, 755
BisI	GCNGC	2 cut(s)	6, 637
BlsI	GCNGC	2 cut(s)	7, 638
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	205, 370
BmrFI	CCNGG	1 cut(s)	761
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 221
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	3 cut(s)	107, 134, 540
BseBI	CCWGG	1 cut(s)	761
BseGI	GGATG	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	36, 221
BseMII	CTCAG	4 cut(s)	461, 501, 718, 755
BseNI	ACTGG	3 cut(s)	107, 134, 540
BseRI	GAGGAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	17, 648
BseYI	CCCAGC	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	657
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	547
BsiHKAI	GWGCWC	2 cut(s)	154, 543
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	36, 221
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	657
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	154, 543
Bsp143I	GATC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	4 cut(s)	462, 500, 717, 754
BspLI	GGNNCC	2 cut(s)	205, 370
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	107, 134, 540
BssAI	RCCGGY	1 cut(s)	36
BssMI	GATC	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	2 cut(s)	275, 767
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	154, 298, 302
BstDEI	CTNAG	4 cut(s)	470, 487, 704, 741
BstF5I	GGATG	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	466
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 59
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	17, 648
BsuRI	GGCC	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	572
Cac8I	GCNNGC	3 cut(s)	154, 298, 302
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	533
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	3 cut(s)	343, 360, 417
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	4 cut(s)	470, 487, 704, 741
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	759
EcoRV	GATATC	1 cut(s)	568
FaeI	CATG	3 cut(s)	346, 363, 420
FatI	CATG	3 cut(s)	342, 359, 416
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	6, 637
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	2 cut(s)	6, 637
FspBI	CTAG	3 cut(s)	221, 674, 755
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	2 cut(s)	6, 637
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	3 cut(s)	346, 363, 420
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	138, 165, 348, 697
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	3 cut(s)	19, 61, 692
Hpy166II	GTNNAC	2 cut(s)	108, 152
Hpy188I	TCNGA	2 cut(s)	471, 707
Hpy188III	TCNNGA	6 cut(s)	215, 248, 287, 755, 780, 808
Hpy8I	GTNNAC	2 cut(s)	108, 152
Hpy99I	CGWCG	1 cut(s)	309
HpyCH4III	ACNGT	2 cut(s)	275, 767
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	152, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 59
HpyF3I	CTNAG	4 cut(s)	470, 487, 704, 741
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	346, 363, 420
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	1 cut(s)	466
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	2 cut(s)	17, 648
MaeI	CTAG	3 cut(s)	221, 674, 755
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	125, 139, 767
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	4 cut(s)	38, 430, 509, 574
MhlI	GDGCHC	2 cut(s)	154, 543
MluCI	AATT	4 cut(s)	290, 410, 462, 523
MlyI	GAGTC	2 cut(s)	147, 357
MmeI	TCCRAC	1 cut(s)	815
MseI	TTAA	2 cut(s)	21, 608
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	2 cut(s)	50, 59
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	3 cut(s)	346, 363, 420
NlaIV	GGNNCC	2 cut(s)	205, 370
NmuCI	GTSAC	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	165, 697
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	7, 638
PleI	GAGTC	2 cut(s)	146, 356
PpsI	GAGTC	2 cut(s)	146, 356
PpuMI	RGGWCCY	1 cut(s)	491
PsiI	TTATAA	2 cut(s)	320, 477
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	2 cut(s)	205, 370
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	21, 608
SatI	GCNGC	2 cut(s)	6, 637
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	2 cut(s)	147, 357
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	2 cut(s)	154, 543
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	290, 410, 462, 523
SseBI	AGGCCT	1 cut(s)	657
SspMI	CTAG	3 cut(s)	221, 674, 755
StuI	AGGCCT	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	759
TaaI	ACNGT	2 cut(s)	275, 767
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	82, 163, 249, 393, 547
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	4 cut(s)	290, 410, 462, 523
TfiI	GAWTC	2 cut(s)	165, 697
Tru1I	TTAA	2 cut(s)	21, 608
Tru9I	TTAA	2 cut(s)	21, 608
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	5, 636
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	331, 405
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	754
XspI	CTAG	3 cut(s)	221, 674, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.