RLG00000034199

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000229
Physical Location & Seq
Reverse (-)
38277331 .. 38277971
641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034199

Sequence Viewer

Length: 519 bp
ATGGTGGTACCACCACCAAGGTCCCCGTTCTTCTTCCCACTGCCGCCCAAGTCCTCCACATCCACTGCTGGAACCGCCGTCAAGGTCACCGCCGCCGCACCAAAATCGAAGGCGAAGCCTAAAGCAGACGCCGATGTGGTCAAGGCCAAGAGAAACGTCAACAGGAACGCTGGCATTCTGAAGCCGATCTTCACCAAGGACTCCGCCGCCATCGCCATTATCAACCTCCACCACCTCGCCACCACACAACAACCTCTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCATCGTCATCGTCACCATCGTCGCCTCATTCTCTCTCTGCCGAATCCAACAACCGCTTCCTCCGCCACGTCACTCCCTCTTCCGGCGTCGCGACGGCGCCCCTTCCTGAGTATCTCCGGCCGAATCCGCTATCGCCGCCAATCCCGTCGCCTCGCTCCAGGTCTTCGCCTTCTCCGCCATCAAGTACCGCCGAGCCTCCTCCACTGCGGTCGTCGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.17

Weight (kDa)

12.0

Isoelectric Point (pI)

73.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 2 cut(s) 7, 393
AccII CGCG 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 3 cut(s) 129, 383, 394
AfaI GTAC 2 cut(s) 9, 483
AfiI CCNNNNNNNGG 1 cut(s) 379
AflII CTTAAG 1 cut(s) 275
AjiI CACGTC 1 cut(s) 366
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AoxI GGCC 2 cut(s) 144, 415
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 79, 184, 302
AvaII GGWCC 1 cut(s) 21
BanI GGYRCC 2 cut(s) 7, 393
BbsI GAAGAC 1 cut(s) 452
BccI CCATC 3 cut(s) 218, 321, 483
BceAI ACGGC 2 cut(s) 62, 407
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 397
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 6 cut(s) 44, 93, 96, 207, 433, 514
BlsI GCNGC 6 cut(s) 45, 94, 97, 208, 434, 515
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 4 cut(s) 9, 23, 73, 395
BmrFI CCNGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 438
BsaHI GRCGYC 3 cut(s) 129, 383, 394
BsaJI CCNNGG 2 cut(s) 17, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 17, 195
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 485
BseX3I CGGCCG 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 2 cut(s) 418, 508
BshFI GGCC 2 cut(s) 146, 417
BshNI GGYRCC 2 cut(s) 7, 393
BsiEI CGRYCG 2 cut(s) 418, 508
BsiSI CCGG 2 cut(s) 380, 414
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 2 cut(s) 174, 286
BsnI GGCC 2 cut(s) 146, 417
Bsp143I GATC 1 cut(s) 186
Bsp68I TCGCGA 1 cut(s) 388
BspANI GGCC 2 cut(s) 146, 417
BspCNI CTCAG 1 cut(s) 396
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 9, 23, 73, 395
BspT107I GGYRCC 2 cut(s) 7, 393
BspTI CTTAAG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 17, 195
BssMI GATC 1 cut(s) 186
BssNI GRCGYC 3 cut(s) 129, 383, 394
BssT1I CCWWGG 2 cut(s) 17, 195
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 3 cut(s) 129, 383, 394
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 404
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 388
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMCI CGRYCG 2 cut(s) 418, 508
BstMWI GCNNNNNNNGC 7 cut(s) 74, 212, 359, 423, 432, 471, 510
BstNI CCWGG 1 cut(s) 456
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 454
BstUI CGCG 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 452
BstZI CGGCCG 1 cut(s) 415
BsuRI GGCC 2 cut(s) 146, 417
BtgZI GCGATG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 59
BtsI GCAGTG 3 cut(s) 38, 63, 499
BtsIMutI CAGTG 3 cut(s) 38, 63, 499
BtuMI TCGCGA 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 2 cut(s) 137, 372
Csp6I GTAC 2 cut(s) 8, 482
CviJI RGCY 5 cut(s) 118, 146, 184, 417, 492
CviKI_1 RGCY 5 cut(s) 118, 146, 184, 417, 492
CviQI GTAC 2 cut(s) 8, 482
DdeI CTNAG 1 cut(s) 404
DinI GGCGCC 1 cut(s) 395
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 415
EagI CGGCCG 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 3 cut(s) 193, 349, 461
EclXI CGGCCG 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 17, 195
Eco47I GGWCC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 21
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 17, 195
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 17, 195
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 7
Fnu4HI GCNGC 6 cut(s) 44, 93, 96, 207, 433, 514
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 6 cut(s) 44, 93, 96, 207, 433, 514
GlaI GCGC 1 cut(s) 395
GluI GCNGC 6 cut(s) 44, 93, 96, 207, 433, 514
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 2 cut(s) 146, 417
HapII CCGG 2 cut(s) 380, 414
HgaI GACGC 2 cut(s) 137, 372
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 3 cut(s) 129, 383, 394
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 200, 340, 420
HpaII CCGG 2 cut(s) 380, 414
HphI GGTGA 3 cut(s) 79, 184, 302
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 180, 283
Hpy188III TCNNGA 2 cut(s) 387, 403
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 5 cut(s) 321, 388, 393, 447, 513
HpyAV CCTTC 3 cut(s) 103, 409, 476
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 156, 365
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 212, 359, 423, 432, 471, 510
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 2 cut(s) 156, 365
Hsp92I GRCGYC 3 cut(s) 129, 383, 394
HspAI GCGC 1 cut(s) 394
KasI GGCGCC 1 cut(s) 393
KpnI GGTACC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 8 cut(s) 54, 148, 156, 393, 416, 427, 441, 468
MaeII ACGT 2 cut(s) 156, 365
MaeIII GTNAC 3 cut(s) 85, 308, 366
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 5 cut(s) 22, 25, 181, 368, 452
Mly113I GGCGCC 1 cut(s) 394
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 368
MseI TTAA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 2 cut(s) 380, 414
MspR9I CCNGG 1 cut(s) 456
Mva1269I GAATGC 2 cut(s) 174, 286
MvaI CCWGG 1 cut(s) 456
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 7 cut(s) 74, 212, 359, 423, 432, 471, 510
NarI GGCGCC 1 cut(s) 394
NdeII GATC 1 cut(s) 186
NlaIV GGNNCC 4 cut(s) 9, 23, 73, 395
NmeAIII GCCGAG 1 cut(s) 513
NmuCI GTSAC 3 cut(s) 85, 308, 366
NruI TCGCGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 2 cut(s) 174, 286
PfeI GAWTC 2 cut(s) 340, 420
PkrI GCNGC 6 cut(s) 45, 94, 97, 208, 434, 515
PleI GAGTC 1 cut(s) 194
PluTI GGCGCC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 454
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 4 cut(s) 9, 23, 73, 395
PspPI GGNCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 21
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 2 cut(s) 9, 483
RsaNI GTAC 2 cut(s) 8, 482
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 6 cut(s) 44, 93, 96, 207, 433, 514
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 456
SetI ASST 9 cut(s) 23, 87, 159, 228, 237, 256, 276, 368, 460
SfoI GGCGCC 1 cut(s) 395
SinI GGWCC 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SspDI GGCGCC 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 17, 195
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 159, 368
TaqI TCGA 1 cut(s) 107
TauI GCSGC 6 cut(s) 46, 95, 98, 209, 435, 516
TfiI GAWTC 2 cut(s) 340, 420
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 3 cut(s) 45, 70, 506
TseFI GTSAC 3 cut(s) 85, 308, 366
Tsp45I GTSAC 3 cut(s) 85, 308, 366
TspRI CASTG 3 cut(s) 45, 70, 506
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.