pycom05g27590

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000229
Physical Location & Seq
Forward (+)
28536718 .. 28537700
983 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27590.1

Sequence Viewer

Length: 726 bp
ATGGAAAGAACTCGTTCCCTCTTGTCGTTAACTTTGTTGCTCGTCCTGAGCTGTTGTATGTATATGCCGAACTCATTAATAGGCACAGTAGCCGCTCAAACCAACATCAGCACAGACCAGGCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAGTGACCCTCAAAAAATATTGACCACCAACTGGTCTACCTCGAATTCGAATATCTGCAACTGGGTTGGCGTTACTTGCGGTGTAGGCCACCTTAGAGTCACAGCCTTGAATCTCTCTTACATGGGTCTCACAGGCTCTATTCCTCCTCAACTAGGAAACCTATCATTTCTTGTTCAGTTGGAATTCAGAAACAACAGTTTCCATGGTACCTTGCCATCGGAATTGTCTCGTCTACGGAGGTTGAAGTTGATTAGGTTCAGCTTTAACAACTTTATAGGAACCATTCCGTCATGGTTCGGATCCTTATCTGAACTTCAAACCTTCGATTTGTATGGTAATCAATTTTCAGGTTTCATACCGAATGCTATCTTCAACTTGTCTGCACTGCAAGTACTTGATCTAAGAAACAACGAGCTATCCGGGAGCATACCAAGAGAAGTAGAGAAGTTAAAAATGCTGGAGGAGATATTACTTGGACACAACAATTTCACAGGTAGCATACCAAGAGAAATCGGGAACTTAACCATGCTCAAGGTCATATACCTTGACTATAACATGTTCGAAGGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

242

Amino Acids

26.8

Weight (kDa)

7.7

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 37 - 77 1.6e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 87 - 162 7.4e-07 Leucine-rich repeat region
LRR_8 PF13855 131 - 190 7.1e-09 Leucine rich repeat
LRR_14 PF23598 170 - 231 5.7e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 183
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 188, 385
AciI CCGC 2 cut(s) 93, 231
AclWI GGATC 2 cut(s) 447, 460
AcsI RAATTY 2 cut(s) 196, 335
AfaI GTAC 2 cut(s) 361, 546
AfiI CCNNNNNNNGG 2 cut(s) 183, 305
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 4 cut(s) 262, 397, 470, 526
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 4 cut(s) 51, 414, 568, 723
AluI AGCT 4 cut(s) 51, 414, 568, 723
Alw26I GTCTC 2 cut(s) 284, 384
AlwI GGATC 2 cut(s) 447, 460
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 196, 335
AseI ATTAAT 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 2 cut(s) 200, 714
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 284, 384
BfaI CTAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 93, 123
BlsI GCNGC 2 cut(s) 94, 124
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 2 cut(s) 119, 574
BmiI GGNNCC 3 cut(s) 361, 433, 454
BmrFI CCNGG 2 cut(s) 119, 574
BmrI ACTGGG 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 2 cut(s) 200, 714
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 305
Bse1I ACTGG 3 cut(s) 153, 188, 218
Bse8I GATNNNNATC 1 cut(s) 457
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 183, 305
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 3 cut(s) 153, 188, 218
BseRI GAGGAG 2 cut(s) 288, 629
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 183, 305
BsmAI GTCTC 2 cut(s) 284, 384
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 284
Bsp119I TTCGAA 2 cut(s) 200, 714
Bsp143I GATC 2 cut(s) 452, 550
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 93, 231
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 361, 433, 454
BspPI GGATC 2 cut(s) 447, 460
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 2 cut(s) 200, 714
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 153, 188, 218
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 452, 550
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 88, 350
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 2 cut(s) 200, 714
BstDEI CTNAG 3 cut(s) 47, 245, 554
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 303
BstKTI GATC 2 cut(s) 455, 553
BstMAI GTCTC 2 cut(s) 284, 384
BstMBI GATC 2 cut(s) 452, 550
BstMWI GCNNNNNNNGC 4 cut(s) 131, 140, 228, 237
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 117, 572
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 536
BtsIMutI CAGTG 2 cut(s) 160, 536
Csp6I GTAC 2 cut(s) 360, 545
CviAII CATG 5 cut(s) 274, 356, 444, 679, 709
CviQI GTAC 2 cut(s) 360, 545
DdeI CTNAG 3 cut(s) 47, 245, 554
DpnI GATC 2 cut(s) 454, 552
DpnII GATC 2 cut(s) 452, 550
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoRI GAATTC 2 cut(s) 196, 335
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 277, 359, 447, 682, 712
FatI CATG 5 cut(s) 273, 355, 443, 678, 708
FblI GTMKAC 2 cut(s) 188, 385
Fnu4HI GCNGC 2 cut(s) 93, 123
Fsp4HI GCNGC 2 cut(s) 93, 123
FspBI CTAG 1 cut(s) 305
GluI GCNGC 2 cut(s) 93, 123
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 573
Hin1II CATG 5 cut(s) 277, 359, 447, 682, 712
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 249, 262
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 3 cut(s) 30, 189, 386
Hpy188I TCNGA 4 cut(s) 341, 373, 452, 463
Hpy188III TCNNGA 2 cut(s) 46, 667
Hpy8I GTNNAC 3 cut(s) 30, 189, 386
HpyAV CCTTC 2 cut(s) 484, 710
HpyCH4III ACNGT 2 cut(s) 88, 350
HpyCH4V TGCA 3 cut(s) 210, 536, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 140, 228, 237
HpyF3I CTNAG 3 cut(s) 47, 245, 554
Hsp92II CATG 5 cut(s) 277, 359, 447, 682, 712
KpnI GGTACC 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 452, 550
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 576
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 155, 223, 250
MalI GATC 2 cut(s) 454, 552
MbiI CCGCTC 1 cut(s) 95
MboI GATC 2 cut(s) 452, 550
MboII GAAGA 2 cut(s) 119, 514
MflI RGATCY 1 cut(s) 452
MluCI AATT 5 cut(s) 196, 335, 374, 494, 637
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 7 cut(s) 29, 171, 202, 306, 309, 384, 607
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 5 cut(s) 29, 77, 417, 602, 674
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 2 cut(s) 119, 574
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 131, 140, 228, 237
NciI CCSGG 1 cut(s) 574
NcoI CCATGG 1 cut(s) 355
NdeII GATC 2 cut(s) 452, 550
NlaIII CATG 5 cut(s) 277, 359, 447, 682, 712
NlaIV GGNNCC 3 cut(s) 361, 433, 454
NmuCI GTSAC 2 cut(s) 155, 250
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 2 cut(s) 200, 714
PciI ACATGT 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 2 cut(s) 94, 124
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PscI ACATGT 1 cut(s) 708
PshBI ATTAAT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 361, 433, 454
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 2 cut(s) 361, 546
RsaNI GTAC 2 cut(s) 360, 545
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 29, 77, 417, 602, 674
SatI GCNGC 2 cut(s) 93, 123
Sau3AI GATC 2 cut(s) 452, 550
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 119, 574
SfuI TTCGAA 2 cut(s) 200, 714
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 5 cut(s) 196, 335, 374, 494, 637
SsiI CCGC 2 cut(s) 93, 231
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 117, 572
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 88, 350
TaqI TCGA 4 cut(s) 194, 200, 477, 714
TasI AATT 5 cut(s) 196, 335, 374, 494, 637
TatI WGTACW 1 cut(s) 544
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 5 cut(s) 29, 77, 417, 602, 674
Tru9I TTAA 5 cut(s) 29, 77, 417, 602, 674
TscAI CASTG 2 cut(s) 160, 543
TseFI GTSAC 2 cut(s) 155, 250
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 155, 250
TspDTI ATGAA 1 cut(s) 496
TspGWI ACGGA 2 cut(s) 403, 429
TspRI CASTG 2 cut(s) 160, 543
Van91I CCANNNNNTGG 1 cut(s) 183
VspI ATTAAT 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 303
XapI RAATTY 2 cut(s) 196, 335
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 188, 385
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.