Rh2CG249900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
26420592 .. 26443821
23230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG249900.1

Sequence Viewer

Length: 993 bp
ATGGAGAGAGTTACTTGGTTCTTCCTGATATACTTGATCTGTTGTGAGGTGGCTAGCTGCTTAACTACGGCAGCACAAACCAACCTTAACATCACCACAGAACGGTCTGCTCTTCTTGCTCTCAAAGCCTGTATCACCAATGACCCTAGAAACATAGTCTTCACTAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGAACGCCATCATCGAGTCGCAGACTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGTTAGGAAACTTATCATTTCTTATTAATATGGACTTTAGCAATAACAGTTTCCATGGTATATTGCCTCAGGAATTGGCTCACTTGCGTCGGTTGAAGTTTATCAGCTTGGGAAACAACAAGTTCATGAGTGTCATTCTGTCATGGTTTGGGTCCTTATTCAAACTTCAAGTATTTAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACCTGCTACAATCTTCAACTTATCTGCTCTGCAAAAAATAGATCTGAGGGATAACCAACTCTCAGAAATTCCGAATAAGATCGGCACTTTGAATCATCTGGAAAAATTTTATGTGCAAGAGAATGCCTTAAAAGGGCCTATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAACAATTTGAATGGTAGAATTCCTGACAATATTTGTCAAAATCCTTCAAATATTCAAGAGTTGAATTTGGCTGCCAATCAGTTTAATGGTCCACTTCCTTCCATATTTGGGCAATGCAAACAACTTCTTCGATTAGGCTTGGCGGCTAACAGCTTGACAGCTGCATCTTGTTCTCTTGCTAGTAGTGGCGGTCCTGTGCCACGTGTCCTCTTTCTGTTGTATTGGACACCCCTACATATCAACCCATCAATGGGGAGGAATCACTACACATATAACAAAATGTCTGAATATTATGTGCGAGATTCTTGA

Protein Analysis

330

Amino Acids

36.86

Weight (kDa)

8.72

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 5.9e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 141 - 223 2.5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 827, 873
AcsI RAATTY 4 cut(s) 558, 596, 702, 748
AcvI CACGTG 1 cut(s) 887
AfiI CCNNNNNNNGG 6 cut(s) 102, 287, 624, 792, 934, 935
AflIII ACRYGT 2 cut(s) 651, 886
AluBI AGCT 4 cut(s) 57, 390, 837, 845
AluI AGCT 4 cut(s) 57, 390, 837, 845
Alw26I GTCTC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 626
ApeKI GCWGC 4 cut(s) 57, 71, 755, 845
ApoI RAATTY 4 cut(s) 558, 596, 702, 748
AseI ATTAAT 1 cut(s) 309
AspS9I GGNCC 4 cut(s) 435, 626, 773, 875
AsuHPI GGTGA 3 cut(s) 85, 127, 227
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 3 cut(s) 435, 773, 875
AxyI CCTNAGG 1 cut(s) 351
BanI GGYRCC 1 cut(s) 269
BbrPI CACGTG 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 4 cut(s) 44, 83, 742, 832
BccI CCATC 2 cut(s) 231, 937
BceAI ACGGC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 3 cut(s) 54, 147, 864
BfuAI ACCTGC 1 cut(s) 502
BglII AGATCT 1 cut(s) 532
BisI GCNGC 5 cut(s) 58, 72, 756, 828, 846
BlsI GCNGC 5 cut(s) 59, 73, 757, 829, 847
Bme18I GGWCC 3 cut(s) 435, 773, 875
BmgT120I GGNCC 4 cut(s) 435, 626, 773, 875
BmiI GGNNCC 3 cut(s) 271, 436, 487
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 857
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 887
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 287, 624, 792, 934, 935
Bse1I ACTGG 2 cut(s) 173, 200
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 6 cut(s) 102, 287, 624, 792, 934, 935
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 3 cut(s) 365, 527, 567
BseNI ACTGG 2 cut(s) 173, 200
BseXI GCAGC 4 cut(s) 44, 83, 742, 832
BshFI GGCC 1 cut(s) 628
BshNI GGYRCC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 6 cut(s) 102, 287, 624, 792, 934, 935
BsmAI GTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 1 cut(s) 628
Bso31I GGTCTC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 36, 532, 570
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 2 cut(s) 827, 873
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 3 cut(s) 364, 528, 566
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 271, 436, 487
BspMI ACCTGC 1 cut(s) 502
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 803
BsrI ACTGG 2 cut(s) 173, 200
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 36, 532, 570
BssT1I CCWWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 105, 332
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 351, 536, 553
BstDSI CCRYGG 1 cut(s) 337
BstKTI GATC 3 cut(s) 39, 535, 573
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 36, 532, 570
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstNSI RCATGY 1 cut(s) 655
BstV1I GCAGC 4 cut(s) 44, 83, 742, 832
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 628
BtgI CCRYGG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 408
Cfr13I GGNCC 4 cut(s) 435, 626, 773, 875
CseI GACGC 1 cut(s) 359
CviAII CATG 4 cut(s) 338, 409, 426, 652
DdeI CTNAG 3 cut(s) 351, 536, 553
DpnI GATC 3 cut(s) 38, 534, 572
DpnII GATC 3 cut(s) 36, 532, 570
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 3 cut(s) 435, 773, 875
Eco72I CACGTG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 435, 626
EcoRI GAATTC 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 4 cut(s) 341, 412, 429, 655
FatI CATG 4 cut(s) 337, 408, 425, 651
Fnu4HI GCNGC 5 cut(s) 58, 72, 756, 828, 846
Fsp4HI GCNGC 5 cut(s) 58, 72, 756, 828, 846
FspBI CTAG 3 cut(s) 54, 147, 864
GluI GCNGC 5 cut(s) 58, 72, 756, 828, 846
HaeIII GGCC 1 cut(s) 628
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 359
Hin1II CATG 4 cut(s) 341, 412, 429, 655
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 5 cut(s) 204, 231, 583, 943, 986
HpaII CCGG 1 cut(s) 281
HphI GGTGA 3 cut(s) 85, 127, 227
Hpy166II GTNNAC 3 cut(s) 174, 218, 776
Hpy188I TCNGA 4 cut(s) 537, 556, 564, 970
Hpy188III TCNNGA 8 cut(s) 25, 281, 353, 409, 590, 707, 740, 990
Hpy8I GTNNAC 3 cut(s) 174, 218, 776
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 738, 792
HpyCH4III ACNGT 2 cut(s) 105, 332
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 4 cut(s) 523, 607, 801, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 3 cut(s) 351, 536, 553
HpySE526I ACGT 1 cut(s) 886
Hsp92II CATG 4 cut(s) 341, 412, 429, 655
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 36, 532, 570
LguI GCTCTTC 1 cut(s) 117
Lsp1109I GCAGC 4 cut(s) 44, 83, 742, 832
LweI GCATC 1 cut(s) 857
MaeI CTAG 3 cut(s) 54, 147, 864
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 5 cut(s) 10, 191, 205, 670, 683
MalI GATC 3 cut(s) 38, 534, 572
MboI GATC 3 cut(s) 36, 532, 570
MboII GAAGA 6 cut(s) 13, 104, 151, 496, 637, 803
MflI RGATCY 1 cut(s) 532
MluCI AATT 7 cut(s) 356, 476, 558, 596, 688, 702, 748
MlyI GAGTC 2 cut(s) 213, 240
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 7 cut(s) 40, 257, 288, 360, 531, 902, 933
MroI TCCGGA 1 cut(s) 280
MseI TTAA 5 cut(s) 62, 87, 309, 620, 768
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NcoI CCATGG 1 cut(s) 337
NdeII GATC 3 cut(s) 36, 532, 570
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 341, 412, 429, 655
NlaIV GGNNCC 3 cut(s) 271, 436, 487
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 655
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 3 cut(s) 583, 943, 986
PkrI GCNGC 5 cut(s) 59, 73, 757, 829, 847
PleI GAGTC 2 cut(s) 212, 239
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 2 cut(s) 212, 239
Ppu21I YACGTR 1 cut(s) 887
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 651
PshBI ATTAAT 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 435
PspCI CACGTG 1 cut(s) 887
PspN4I GGNNCC 3 cut(s) 271, 436, 487
PspPI GGNCC 4 cut(s) 435, 626, 773, 875
PspPPI RGGWCCY 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 5 cut(s) 62, 87, 309, 620, 768
SatI GCNGC 5 cut(s) 58, 72, 756, 828, 846
Sau3AI GATC 3 cut(s) 36, 532, 570
Sau96I GGNCC 4 cut(s) 435, 626, 773, 875
SchI GAGTC 2 cut(s) 213, 240
SfaNI GCATC 1 cut(s) 857
SinI GGWCC 3 cut(s) 435, 773, 875
Sse9I AATT 7 cut(s) 356, 476, 558, 596, 688, 702, 748
SsiI CCGC 2 cut(s) 827, 873
SspI AATATT 3 cut(s) 715, 736, 974
SspMI CTAG 3 cut(s) 54, 147, 864
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 105, 332
TaiI ACGT 1 cut(s) 889
TaqI TCGA 2 cut(s) 229, 814
TasI AATT 7 cut(s) 356, 476, 558, 596, 688, 702, 748
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 3 cut(s) 583, 943, 986
Tru1I TTAA 5 cut(s) 62, 87, 309, 620, 768
Tru9I TTAA 5 cut(s) 62, 87, 309, 620, 768
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 57, 71, 755, 845
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 435, 773, 875
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 4 cut(s) 558, 596, 702, 748
XceI RCATGY 1 cut(s) 655
XspI CTAG 3 cut(s) 54, 147, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.